mRNA_S-ischiensis_contig116.2478.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig116.2478.1
Unique NamemRNA_S-ischiensis_contig116.2478.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig116.2478.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig116contigS-ischiensis_contig116:75313..75868 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size539
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig116.2478.1prot_S-ischiensis_contig116.2478.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig116 75450..75817 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815627.862855-UTR-S-ischiensis_contig116:75312..754491622815627.862855-UTR-S-ischiensis_contig116:75312..75449Schizocladia ischiensis KU_0333UTRS-ischiensis_contig116 75313..75449 +
1695739813.672247-UTR-S-ischiensis_contig116:75312..754491695739813.672247-UTR-S-ischiensis_contig116:75312..75449Schizocladia ischiensis KU_0333UTRS-ischiensis_contig116 75313..75449 +
1622815627.9048643-UTR-S-ischiensis_contig116:75817..758681622815627.9048643-UTR-S-ischiensis_contig116:75817..75868Schizocladia ischiensis KU_0333UTRS-ischiensis_contig116 75818..75868 +
1695739813.703942-UTR-S-ischiensis_contig116:75817..758681695739813.703942-UTR-S-ischiensis_contig116:75817..75868Schizocladia ischiensis KU_0333UTRS-ischiensis_contig116 75818..75868 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815627.8772533-CDS-S-ischiensis_contig116:75449..757171622815627.8772533-CDS-S-ischiensis_contig116:75449..75717Schizocladia ischiensis KU_0333CDSS-ischiensis_contig116 75450..75717 +
1695739813.681737-CDS-S-ischiensis_contig116:75449..757171695739813.681737-CDS-S-ischiensis_contig116:75449..75717Schizocladia ischiensis KU_0333CDSS-ischiensis_contig116 75450..75717 +
1622815627.8901036-CDS-S-ischiensis_contig116:75734..758171622815627.8901036-CDS-S-ischiensis_contig116:75734..75817Schizocladia ischiensis KU_0333CDSS-ischiensis_contig116 75735..75817 +
1695739813.6940517-CDS-S-ischiensis_contig116:75734..758171695739813.6940517-CDS-S-ischiensis_contig116:75734..75817Schizocladia ischiensis KU_0333CDSS-ischiensis_contig116 75735..75817 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig116.2478.1

>prot_S-ischiensis_contig116.2478.1 ID=prot_S-ischiensis_contig116.2478.1|Name=mRNA_S-ischiensis_contig116.2478.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=117bp
MLCQSRGVSPSPPPPSTPNRAGGPPQPARAVYRPGDGRGRAHRTANDPFV
NAADRPGLGPLTVSVVRQQGVTGTVQRAEHTHTHTQTNTRPWLRLGGALL
YLLRSTVQAVRRHVGA*
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mRNA from alignment at S-ischiensis_contig116:75313..75868+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig116.2478.1 ID=mRNA_S-ischiensis_contig116.2478.1|Name=mRNA_S-ischiensis_contig116.2478.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=556bp|location=Sequence derived from alignment at S-ischiensis_contig116:75313..75868+ (Schizocladia ischiensis KU_0333)
AGGGGCACATGCCCCGACTACTGTAGTCCACTAGTCATTCAACGACTGCG
CACTCATATTCACACACATACATGCACGCAACACGCGCTTTCAAGTAACT
GTGCGCGCTTCTTGGGCCTGGGAGAGGTCCATAATCAATGCTCTGCCAAT
CGAGGGGCGTTTCACCGTCACCACCTCCACCCTCCACCCCGAACAGGGCG
GGCGGCCCCCCGCAGCCCGCCCGTGCGGTCTATCGCCCGGGCGATGGAAG
GGGCCGCGCCCACCGCACGGCGAACGACCCGTTTGTCAACGCGGCCGACC
GACCCGGGCTGGGCCCCTTGACGGTCTCAGTGGTACGGCAACAAGGGGTG
ACAGGCACGGTGCAGCGGGCGGAGCACACACACACACACACACAGACAAA
CACACGCACACACACACAACAGGACCTTGGCTCCGGCTGGGAGGGGCCTT
GTTGTACCTACTTAGAAGTACAGTCCAAGCCGTTCGGCGGCATGTGGGTG
CCTAAAACGGGGGGGGGCAAGAAGAGAAAAGGAAAAAGCAGAGATCCAAC
CGGGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig116:75313..75868+

>mRNA_S-ischiensis_contig116.2478.1 ID=mRNA_S-ischiensis_contig116.2478.1|Name=mRNA_S-ischiensis_contig116.2478.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=702bp|location=Sequence derived from alignment at S-ischiensis_contig116:75313..75868+ (Schizocladia ischiensis KU_0333)
ATGCTCTGCCAATCGAGGGGCGTTTCACCGTCACCACCTCCACCCTCCAC
CCCGAACAGGGCGGGCGGCCCCCCGCAGCCCGCCCGTGCGGTCTATCGCC
CGGGCGATGGAAGGGGCCGCGCCCACCGCACGGCGAACGACCCGTTTGTC
AACGCGGCCGACCGACCCGGGCTGGGCCCCTTGACGGTCTCAGTGGTACG
GCAACAAGGGGTGACAGGCACGGTGCAGCGGGCGGAGCACACACACACAC
ACACACAGACAAACACACATGCTCTGCCAATCGAGGGGCGTTTCACCGTC
ACCACCTCCACCCTCCACCCCGAACAGGGCGGGCGGCCCCCCGCAGCCCG
CCCGTGCGGTCTATCGCCCGGGCGATGGAAGGGGCCGCGCCCACCGCACG
GCGAACGACCCGTTTGTCAACGCGGCCGACCGACCCGGGCTGGGCCCCTT
GACGGTCTCAGTGGTACGGCAACAAGGGGTGACAGGCACGGTGCAGCGGG
CGGAGCACACACACACACACACACAGACAAACACACGACCTTGGCTCCGG
CTGGGAGGGGCCTTGTTGTACCTACTTAGAAGTACAGTCCAAGCCGTTCG
GCGGCATGTGGGTGCCTAAGACCTTGGCTCCGGCTGGGAGGGGCCTTGTT
GTACCTACTTAGAAGTACAGTCCAAGCCGTTCGGCGGCATGTGGGTGCCT
AA
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