mRNA_S-ischiensis_contig116.2471.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig116.2471.1
Unique NamemRNA_S-ischiensis_contig116.2471.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig116.2471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig116contigS-ischiensis_contig116:26717..27473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_009970.1
Exons1
Model size758
Cds size756
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815628.1379726-CDS-S-ischiensis_contig116:26716..274721622815628.1379726-CDS-S-ischiensis_contig116:26716..27472Schizocladia ischiensis KU_0333CDSS-ischiensis_contig116 26717..27472 +
1695739813.7941668-CDS-S-ischiensis_contig116:26716..274721695739813.7941668-CDS-S-ischiensis_contig116:26716..27472Schizocladia ischiensis KU_0333CDSS-ischiensis_contig116 26717..27472 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig116.2471.1prot_S-ischiensis_contig116.2471.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig116 26717..27472 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig116.2471.1

>prot_S-ischiensis_contig116.2471.1 ID=prot_S-ischiensis_contig116.2471.1|Name=mRNA_S-ischiensis_contig116.2471.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=252bp
PPLPRLSFDTLLDTFMATVAATVAVGGYEGGGGSGSKQASSPGQGIPKLL
SGFCLVVHHTSEERLQIIFTALLATLVSAGVESSTRLRSPSRTLLNAAAA
TEAAAAAAVAPAAPAWARRCAALVLLRLAVQAAHGPAAAGPMRSGGAVLA
SALAQAVREEASEAAGAAAAATMATSWEGAGHLAGCIDGLQALHGLLTRH
PYADLRARGLAVILGAVEPAARAVGKVASDWAATGAAFACFDACCRVLEA
AL
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mRNA from alignment at S-ischiensis_contig116:26717..27473+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig116.2471.1 ID=mRNA_S-ischiensis_contig116.2471.1|Name=mRNA_S-ischiensis_contig116.2471.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=757bp|location=Sequence derived from alignment at S-ischiensis_contig116:26717..27473+ (Schizocladia ischiensis KU_0333)
CCGCCGCTCCCCCGCCTGTCATTTGACACCCTGCTGGACACCTTCATGGC
GACCGTGGCGGCGACCGTGGCGGTGGGAGGGTATGAAGGCGGCGGTGGCA
GCGGCAGCAAACAGGCCAGTTCCCCTGGCCAGGGCATCCCAAAGCTGCTC
AGCGGATTCTGCCTGGTGGTGCACCATACCTCGGAGGAGCGGCTGCAAAT
AATCTTCACCGCTCTCCTTGCCACCCTCGTGAGCGCGGGGGTGGAGAGCA
GCACTCGCTTGAGGTCGCCCTCCCGGACGCTCCTCAACGCGGCAGCGGCC
ACAGAAGCAGCAGCAGCAGCAGCGGTGGCGCCGGCGGCGCCTGCTTGGGC
ACGTCGGTGTGCGGCCCTCGTCCTGCTACGACTAGCGGTGCAGGCAGCGC
ATGGGCCCGCGGCGGCCGGGCCCATGCGGAGCGGCGGGGCGGTGCTGGCC
TCCGCCCTGGCGCAGGCAGTGCGGGAGGAGGCTTCCGAGGCGGCGGGAGC
AGCGGCGGCGGCGACGATGGCGACGTCTTGGGAGGGGGCGGGTCACCTTG
CAGGCTGCATCGACGGTCTGCAGGCCCTGCATGGGCTGCTGACGCGGCAT
CCGTACGCGGACCTGCGTGCCAGAGGGCTGGCGGTCATCCTTGGGGCGGT
GGAGCCCGCCGCCCGGGCTGTCGGCAAGGTGGCGAGCGACTGGGCTGCCA
CGGGGGCTGCGTTTGCGTGCTTTGACGCTTGCTGCCGCGTGCTAGAGGCG
GCGCTGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig116:26717..27473+

>mRNA_S-ischiensis_contig116.2471.1 ID=mRNA_S-ischiensis_contig116.2471.1|Name=mRNA_S-ischiensis_contig116.2471.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1512bp|location=Sequence derived from alignment at S-ischiensis_contig116:26717..27473+ (Schizocladia ischiensis KU_0333)
CCGCCGCTCCCCCGCCTGTCATTTGACACCCTGCTGGACACCTTCATGGC
GACCGTGGCGGCGACCGTGGCGGTGGGAGGGTATGAAGGCGGCGGTGGCA
GCGGCAGCAAACAGGCCAGTTCCCCTGGCCAGGGCATCCCAAAGCTGCTC
AGCGGATTCTGCCTGGTGGTGCACCATACCTCGGAGGAGCGGCTGCAAAT
AATCTTCACCGCTCTCCTTGCCACCCTCGTGAGCGCGGGGGTGGAGAGCA
GCACTCGCTTGAGGTCGCCCTCCCGGACGCTCCTCAACGCGGCAGCGGCC
ACAGAAGCAGCAGCAGCAGCAGCGGTGGCGCCGGCGGCGCCTGCTTGGGC
ACGTCGGTGTGCGGCCCTCGTCCTGCTACGACTAGCGGTGCAGGCAGCGC
ATGGGCCCGCGGCGGCCGGGCCCATGCGGAGCGGCGGGGCGGTGCTGGCC
TCCGCCCTGGCGCAGGCAGTGCGGGAGGAGGCTTCCGAGGCGGCGGGAGC
AGCGGCGGCGGCGACGATGGCGACGTCTTGGGAGGGGGCGGGTCACCTTG
CAGGCTGCATCGACGGTCTGCAGGCCCTGCATGGGCTGCTGACGCGGCAT
CCGTACGCGGACCTGCGTGCCAGAGGGCTGGCGGTCATCCTTGGGGCGGT
GGAGCCCGCCGCCCGGGCTGTCGGCAAGGTGGCGAGCGACTGGGCTGCCA
CGGGGGCTGCGTTTGCGTGCTTTGACGCTTGCTGCCGCGTGCTAGAGGCG
GCGCTGCCGCCGCTCCCCCGCCTGTCATTTGACACCCTGCTGGACACCTT
CATGGCGACCGTGGCGGCGACCGTGGCGGTGGGAGGGTATGAAGGCGGCG
GTGGCAGCGGCAGCAAACAGGCCAGTTCCCCTGGCCAGGGCATCCCAAAG
CTGCTCAGCGGATTCTGCCTGGTGGTGCACCATACCTCGGAGGAGCGGCT
GCAAATAATCTTCACCGCTCTCCTTGCCACCCTCGTGAGCGCGGGGGTGG
AGAGCAGCACTCGCTTGAGGTCGCCCTCCCGGACGCTCCTCAACGCGGCA
GCGGCCACAGAAGCAGCAGCAGCAGCAGCGGTGGCGCCGGCGGCGCCTGC
TTGGGCACGTCGGTGTGCGGCCCTCGTCCTGCTACGACTAGCGGTGCAGG
CAGCGCATGGGCCCGCGGCGGCCGGGCCCATGCGGAGCGGCGGGGCGGTG
CTGGCCTCCGCCCTGGCGCAGGCAGTGCGGGAGGAGGCTTCCGAGGCGGC
GGGAGCAGCGGCGGCGGCGACGATGGCGACGTCTTGGGAGGGGGCGGGTC
ACCTTGCAGGCTGCATCGACGGTCTGCAGGCCCTGCATGGGCTGCTGACG
CGGCATCCGTACGCGGACCTGCGTGCCAGAGGGCTGGCGGTCATCCTTGG
GGCGGTGGAGCCCGCCGCCCGGGCTGTCGGCAAGGTGGCGAGCGACTGGG
CTGCCACGGGGGCTGCGTTTGCGTGCTTTGACGCTTGCTGCCGCGTGCTA
GAGGCGGCGCTG
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