mRNA_S-ischiensis_contig115.2469.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig115.2469.1
Unique NamemRNA_S-ischiensis_contig115.2469.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig115.2469.1 vs. uniprot
Match: B8BWE3_THAPS (SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BWE3_THAPS)

HSP 1 Score: 138 bits (348), Expect = 2.640e-32
Identity = 78/176 (44.32%), Postives = 109/176 (61.93%), Query Frame = 2 
Query:  614 QVLAGARRGAKDGLHRVEGGFCPGTFPYVVLDPPCSALGLRPRLVVEDVDMDKGILPIAKLQKQLLRSAVRLLAPGGTLVYSTCTVDPLENEGLVRHALDTYPCLQLVPAEPRVPGTSRPGLAGCGLGERERQMIQRFDPTLPMVSARHETETGSEGTVCSSGGDTIGFFIAKFVK 1141
            +++  A   +KDGL  ++G F P +F  ++LDPPCSALGLRP+L+V DV     +L  +  Q+  +RSAV LL  GG L YSTCT++  ENEG+V+  L  +PC++LVP    +PG  R GL G GL + ER M++RFDP+        +T T           DT+GFF+AKF+K
Sbjct:  208 EIVKSASASSKDGLLSIKG-FHPNSFDRILLDPPCSALGLRPKLLV-DVKSLPELLKHSDYQQLFVRSAVPLLKVGGVLSYSTCTINASENEGIVKFILSEFPCMKLVPIADYIPG--RAGLEGLGLSDEERGMVRRFDPS--------DTAT-----------DTMGFFVAKFIK 360
[Close]
BLAST of mRNA_S-ischiensis_contig115.2469.1 vs. uniprot
Match: A0A7S2MK12_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MK12_9STRA)

HSP 1 Score: 133 bits (335), Expect = 3.950e-32
Identity = 83/171 (48.54%), Postives = 102/171 (59.65%), Query Frame = 2 
Query:  647 DGLHRVEGGFCPGTFPYVVLDPPCSALGLRPRLVVEDVDMDKGILPIA-KLQKQLLRSAVRLLAPGGTLVYSTCTVDPLENEGLVRHALDTYPCLQLVPAEPRVPGTSRPGLAGCGL-GERERQMIQRFDPTLPMVSARHETETGSEGT---VCSSGGDTIGFFIAKFVKA 1144
            D + R   GF  G+F  V+LD PCSALGLRPRL    +D+  G L  A   Q++LLRSAV LL  GG LVYSTCTV+P ENE +V HAL+TYP L L  A+P       PGL G GL G   R  +QRF PT+        + T + G    +     D+IGFF+AKF+KA
Sbjct:   41 DQVARRPSGFDAGSFDKVLLDGPCSALGLRPRL---RMDVTAGDLTHACDEQRRLLRSAVALLRKGGVLVYSTCTVNPAENESMVAHALETYPELSLCAADPPFAHLGEPGLPGHGLEGGHLRGKVQRFTPTIQNRIPEQCSATAALGDNFEIALPAMDSIGFFVAKFIKA 208
[Close]
BLAST of mRNA_S-ischiensis_contig115.2469.1 vs. uniprot
Match: A0A6V1QKU6_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QKU6_HETAK)

HSP 1 Score: 140 bits (352), Expect = 4.590e-32
Identity = 84/176 (47.73%), Postives = 106/176 (60.23%), Query Frame = 2 
Query:  614 QVLAGARRGAKDGLHRVEGGFCPGTFPYVVLDPPCSALGLRPRLVVEDVDMDKGILPIAKLQKQLLRSAVRLLAPGGTLVYSTCTVDPLENEGLVRHALDTYPCLQLVPAEPRVPGTSRPGLAGCGLGERERQMIQRFDPTLPMVSARHETETGSEGTVCSSGGDTIGFFIAKFVK 1141
            +VL  A  G K+G   ++  F   TF  VVLDPPCSALGLRP+L   D+ M K +     LQ+QL   A RL+ PGG LVYSTCTVDPLENEG+V  AL+ +P L+LV  EP +    + GL GCGL E +R+++QRFDP +P  +                G  T GFF AKF+K
Sbjct:  284 EVLEAAAPG-KEGFPDLKA-FYEETFDRVVLDPPCSALGLRPKLRC-DLTM-KELRSHVDLQRQLFWGAARLVRPGGVLVYSTCTVDPLENEGMVAWALEKHPFLELVAQEPML---GQAGLPGCGLSEEQRRLVQRFDPAVPTTA----------------GDSTTGFFCAKFIK 436
[Close]
BLAST of mRNA_S-ischiensis_contig115.2469.1 vs. uniprot
Match: A0A7S2EE24_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EE24_TRICV)

HSP 1 Score: 127 bits (319), Expect = 2.600e-30
Identity = 72/176 (40.91%), Postives = 98/176 (55.68%), Query Frame = 2 
Query:  614 QVLAGARRGAKDGLHRVEGGFCPGTFPYVVLDPPCSALGLRPRLVVEDVDMDKGILPIAKLQKQLLRSAVRLLAPGGTLVYSTCTVDPLENEGLVRHALDTYPCLQLVPAEPRVPGTSRPGLAGCGLGERERQMIQRFDPTLPMVSARHETETGSEGTVCSSGGDTIGFFIAKFVK 1141
            ++++ A    KDGL  V+  F P +F  ++LDPPCSALGLRPRL + D      +L  A  Q+  +R AV LL PGGT+ YSTCT++  ENE +VR  LD   C+ LVP +        PGL+G GL + E   ++RFDP+                       DT+GFF+AKF+K
Sbjct:   16 EIISSATPSRKDGLLDVKA-FYPESFDRIILDPPCSALGLRPRLHI-DAQSLPDLLRHADYQRAFIRKAVALLKPGGTMTYSTCTINASENEKMVRLILDENKCMTLVPIKS---SCGLPGLSGFGLNQEEASFVRRFDPS-------------------DEAADTMGFFVAKFIK 167
[Close]
BLAST of mRNA_S-ischiensis_contig115.2469.1 vs. uniprot
Match: K8YYZ6_NANGC (SAM_MT_RSMB_NOP domain-containing protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YYZ6_NANGC)

HSP 1 Score: 128 bits (321), Expect = 3.110e-30
Identity = 90/187 (48.13%), Postives = 110/187 (58.82%), Query Frame = 2 
Query:  617 VLAGARRGAKDGLHRVEGGFCPGTFPYVVLDPPCSALGLRPR--LVVEDVDMDKGILPIAKLQKQLLRSAVRLLAPGGTLVYSTCTVDPLENEGLVRHALDTYPCLQLVPAEPRVPGTSRPGLAGCGLGERERQMIQRFDPTLPMVSARHET-ETGSEGTVCSSGGDTIGFFIAKFVK-AIAFHRRD 1165
            VLA A +   DGL  V G F P TF +V+LDPPCSALGLRPR  L V   D+D  +      Q++   +AV LL  GG++ YSTCT++P ENE +VR+ALDTY  LQLVPAEPR+     PG  G  L + ER  +Q F   LP    R    E G EG +     D  GFF+AKFVK A  F  +D
Sbjct:    8 VLAAAAKNT-DGLPLVPG-FYPETFDHVLLDPPCSALGLRPRFSLPVRGQDLDAFVA----FQRKFWWAAVFLLRVGGSMTYSTCTLNPQENEDMVRYALDTYSVLQLVPAEPRL---GAPG-GGKALSDEERGKVQLF---LPGGGGREGGWEEGEEGDL-----DVSGFFVAKFVKVASVFEGKD 176
[Close]
BLAST of mRNA_S-ischiensis_contig115.2469.1 vs. uniprot
Match: A0A7R9UVN6_DIALT (Hypothetical protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UVN6_DIALT)

HSP 1 Score: 125 bits (313), Expect = 1.090e-29
Identity = 76/153 (49.67%), Postives = 102/153 (66.67%), Query Frame = 2 
Query:  683 GTFPYVVLDPPCSALGLRPRLVVEDVDMDKGILPIAKLQKQLLRSAVRLLAPGGTLVYSTCTVDPLENEGLVRHALDTYPCLQLVPAEPRVPGTSRPGLAGCGLGERERQMIQRFDPTLPMVSARHETETGSEGTVCSSGGDTIGFFIAKFVK 1141
            G+F  ++LDPPCSALGLRPRL   +V++D+ +L  AKLQ++L+R+A  LLA GG+LVYSTCT++P ENE +V +AL   P L+LV   P V     PG+AG GL + +R ++QRFDP+         TETG           +IGFF+AKFVK
Sbjct:   14 GSFERILLDPPCSALGLRPRLSW-NVELDE-LLRNAKLQRRLVRAAYDLLADGGSLVYSTCTINPGENEEIVAYALRECPGLELV--RPAVV-LGAPGIAGAGLSDEQRALVQRFDPS---------TETGRA---------SIGFFVAKFVK 143
[Close]
BLAST of mRNA_S-ischiensis_contig115.2469.1 vs. uniprot
Match: A0A1Y1HH12_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HH12_KLENI)

HSP 1 Score: 131 bits (330), Expect = 1.800e-28
Identity = 78/166 (46.99%), Postives = 99/166 (59.64%), Query Frame = 2 
Query:  680 PGTFPYVVLDPPCSALGLRPRLVVEDVDMDKGILPIAKLQKQLLRSAVRLLAPGGTLVYSTCTVDPLENEGLVRHALDTYPCLQLVPAEPRVPGTSRPGLAGCG-----------LGERERQMIQRFDPTLPMVSARHETETGSEGTVCSSGGDTIGFFIAKFVKA 1144
            PG+F  V+LD PCSALGLRPRL V  V + + +      +++ L  AV+L+ PGG +VYSTCT++P ENE LVR+AL+TYPCL+LVP EPR+ G   PGL G G           L E E+  +QRFDP  P+                    DTIGFFIAKF K+
Sbjct:  488 PGSFDRVLLDAPCSALGLRPRLFVGGVTL-QSLRQDGVYKRRFLDQAVKLVKPGGFIVYSTCTLNPGENEALVRYALETYPCLRLVPQEPRLGG---PGLVGGGDVFDGTGYREWLREGEQNSVQRFDPDGPL--------------------DTIGFFIAKFQKS 629
[Close]
BLAST of mRNA_S-ischiensis_contig115.2469.1 vs. uniprot
Match: A0A8K1FI16_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FI16_PYTOL)

HSP 1 Score: 129 bits (323), Expect = 3.570e-28
Identity = 83/201 (41.29%), Postives = 104/201 (51.74%), Query Frame = 2 
Query:  557 HSISHMRDCTSLQFTLITPQVLAGARRGAKDGLHRVEGGFCPGTFPYVVLDPPCSALGLRPRLVVEDVDMDKGILPIAKLQKQLLRSAVRLLAPGGTLVYSTCTVDPLENEGLVRHALDTYPCLQLVPAEPRVPGTSRPGLAGCGLGERERQMIQRFDPTLPMVSARHETETGSEGTVCSSGGDTIGFFIAKFVKAIAFHR 1159
            HS+    D T L    +  Q  A      KD       GF P TF  V+LDPPCSALGLRPRL+    + D  I     +Q+  + SAV LL PGGTLVYSTCT++P ENE +VR+ALD +P L+L P    V  T   GL   GL E E  ++QRFDP+   +                   DT+GFF AKF K  +  +
Sbjct:  300 HSVLPKSDATPLSVREVLDQAKAST---PKDSHLLQVAGFYPETFDKVLLDPPCSALGLRPRLLHAGEEDDLAIF--TSMQRNFIWSAVYLLKPGGTLVYSTCTINPKENERMVRYALDNFP-LRLEPQPIHVGDT---GLTNQGLTEAEAALVQRFDPSNETL-------------------DTMGFFCAKFTKTASIRK 472
[Close]
BLAST of mRNA_S-ischiensis_contig115.2469.1 vs. uniprot
Match: UPI0009E56A5B (putative methyltransferase NSUN6 isoform X1 n=4 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E56A5B)

HSP 1 Score: 130 bits (327), Expect = 3.760e-28
Identity = 77/165 (46.67%), Postives = 97/165 (58.79%), Query Frame = 2 
Query:  671 GFCPGTFPYVVLDPPCSALGLRPRLVVEDVDMDKGILPIAKLQKQLLRSAVRLLAPGGTLVYSTCTVDPLENEGLVRHALDTYPCLQLVPAEPRVPGTSRPGLAG-CGLGE---------RERQMIQRFDPTLPMVSARHETETGSEGTVCSSGGDTIGFFIAKF 1135
            GF P +F  V+LD PCSALGLRPRL   D  ++  +   AK Q+++   AV+L+  GG +VYSTCT++P ENE LVR+ALDTY  L L P  PRV G+   GL G C LGE         RE +++QRFDP+ P+                    DTIGFFIAKF
Sbjct:  465 GFLPNSFDRVLLDAPCSALGLRPRLFAADETIE-SLQTHAKYQRRMFDQAVQLVRSGGVIVYSTCTINPGENEALVRYALDTYKFLSLAPQNPRVGGS---GLVGKCELGEKYVETWLTEREAELVQRFDPSAPL--------------------DTIGFFIAKF 605
[Close]
BLAST of mRNA_S-ischiensis_contig115.2469.1 vs. uniprot
Match: A0A0K9NML5_ZOSMR (SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9NML5_ZOSMR)

HSP 1 Score: 129 bits (325), Expect = 3.880e-28
Identity = 79/188 (42.02%), Postives = 103/188 (54.79%), Query Frame = 2 
Query:  605 ITPQVLAGARRGAKDGLHRVEGGFCPGTFPYVVLDPPCSALGLRPRLVVEDVDMDKGILPIAKLQKQLLRSAVRLLAPGGTLVYSTCTVDPLENEGLVRHALDTYPCLQLVPAEPRVPGTSRPGLAG-CGLGE----------RERQMIQRFDPTLPMVSARHETETGSEGTVCSSGGDTIGFFIAKF 1135
            I P++    R        R   GF P TF  V+LD PCSALGLRPRL V +  ++  ++  A+ Q+++   AV+L+ PGG +VYSTCT++P ENE LVR+ALDTY  L L P  PR+ G   PGL G C L +           E +++QRFDP  P+                    DTIGFFIAKF
Sbjct:  369 IEPKMNGPGRNNCIGNRARNSKGFLPHTFDRVLLDAPCSALGLRPRLFVGEETLE-SLVKHARYQRKMFDQAVQLVRPGGVIVYSTCTINPGENEALVRYALDTYKFLSLAPQHPRIGG---PGLVGHCELSDGKNIEKWLTPSESELVQRFDPCGPL--------------------DTIGFFIAKF 532
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig115.2469.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B8BWE3_THAPS2.640e-3244.32SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=... [more]
A0A7S2MK12_9STRA3.950e-3248.54Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A6V1QKU6_HETAK4.590e-3247.73Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S2EE24_TRICV2.600e-3040.91Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
K8YYZ6_NANGC3.110e-3048.13SAM_MT_RSMB_NOP domain-containing protein (Fragmen... [more]
A0A7R9UVN6_DIALT1.090e-2949.67Hypothetical protein n=1 Tax=Diacronema lutheri Ta... [more]
A0A1Y1HH12_KLENI1.800e-2846.99Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
A0A8K1FI16_PYTOL3.570e-2841.29Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
UPI0009E56A5B3.760e-2846.67putative methyltransferase NSUN6 isoform X1 n=4 Ta... [more]
A0A0K9NML5_ZOSMR3.880e-2842.02SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig115contigS-ischiensis_contig115:99780..104344 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score140.6
Seed ortholog evalue9.9e-31
Seed eggNOG ortholog35128.Thaps33094
Preferred nameNSUN6
KEGG koko:K21971
GOsGO:0000049,GO:0001510,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016427,GO:0016428,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0140098,GO:0140101,GO:1901360,GO:1901363
EggNOG free text desc.Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family
EggNOG OGs2XC15@2836,COG0144@1,KOG1122@2759
COG Functional cat.A
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Hectar predicted targeting categoryother localisation
Exons4
Model size1939
Cds size738
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig115.2469.1prot_S-ischiensis_contig115.2469.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig115 100351..103714 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815627.6299098-UTR-S-ischiensis_contig115:99779..1003501622815627.6299098-UTR-S-ischiensis_contig115:99779..100350Schizocladia ischiensis KU_0333UTRS-ischiensis_contig115 99780..100350 +
1695739813.5269275-UTR-S-ischiensis_contig115:99779..1003501695739813.5269275-UTR-S-ischiensis_contig115:99779..100350Schizocladia ischiensis KU_0333UTRS-ischiensis_contig115 99780..100350 +
1622815627.6945562-UTR-S-ischiensis_contig115:103714..1043441622815627.6945562-UTR-S-ischiensis_contig115:103714..104344Schizocladia ischiensis KU_0333UTRS-ischiensis_contig115 103715..104344 +
1695739813.574337-UTR-S-ischiensis_contig115:103714..1043441695739813.574337-UTR-S-ischiensis_contig115:103714..104344Schizocladia ischiensis KU_0333UTRS-ischiensis_contig115 103715..104344 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815627.6398456-CDS-S-ischiensis_contig115:100350..1005781622815627.6398456-CDS-S-ischiensis_contig115:100350..100578Schizocladia ischiensis KU_0333CDSS-ischiensis_contig115 100351..100578 +
1695739813.5382984-CDS-S-ischiensis_contig115:100350..1005781695739813.5382984-CDS-S-ischiensis_contig115:100350..100578Schizocladia ischiensis KU_0333CDSS-ischiensis_contig115 100351..100578 +
1622815627.6527808-CDS-S-ischiensis_contig115:101154..1012271622815627.6527808-CDS-S-ischiensis_contig115:101154..101227Schizocladia ischiensis KU_0333CDSS-ischiensis_contig115 101155..101227 +
1695739813.5463095-CDS-S-ischiensis_contig115:101154..1012271695739813.5463095-CDS-S-ischiensis_contig115:101154..101227Schizocladia ischiensis KU_0333CDSS-ischiensis_contig115 101155..101227 +
1622815627.6673617-CDS-S-ischiensis_contig115:102339..1026081622815627.6673617-CDS-S-ischiensis_contig115:102339..102608Schizocladia ischiensis KU_0333CDSS-ischiensis_contig115 102340..102608 +
1695739813.5547128-CDS-S-ischiensis_contig115:102339..1026081695739813.5547128-CDS-S-ischiensis_contig115:102339..102608Schizocladia ischiensis KU_0333CDSS-ischiensis_contig115 102340..102608 +
1622815627.6789362-CDS-S-ischiensis_contig115:103546..1037141622815627.6789362-CDS-S-ischiensis_contig115:103546..103714Schizocladia ischiensis KU_0333CDSS-ischiensis_contig115 103547..103714 +
1695739813.5644214-CDS-S-ischiensis_contig115:103546..1037141695739813.5644214-CDS-S-ischiensis_contig115:103546..103714Schizocladia ischiensis KU_0333CDSS-ischiensis_contig115 103547..103714 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig115.2469.1

>prot_S-ischiensis_contig115.2469.1 ID=prot_S-ischiensis_contig115.2469.1|Name=mRNA_S-ischiensis_contig115.2469.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=246bp
MRDCTSLQFTLITPQVLAGARRGAKDGLHRVEGGFCPGTFPYVVLDPPCS
ALGLRPRLVVEDVDMDKGILPIAKLQKQLLRSAVRLLAPGGTLVYSTCTV
DPLENEGLVRHALDTYPCLQLVPAEPRVPGTSRPGLAGCGLGERERQMIQ
RFDPTLPMVSARHETETGSEGTVCSSGGDTIGFFIAKFVKAIAFHRRDVA
PRLHGPRGAPGEDRTRRAALPHRPKQPRGATFRSCVEMWWAASSS*
back to top

mRNA from alignment at S-ischiensis_contig115:99780..104344+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig115.2469.1 ID=mRNA_S-ischiensis_contig115.2469.1|Name=mRNA_S-ischiensis_contig115.2469.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4565bp|location=Sequence derived from alignment at S-ischiensis_contig115:99780..104344+ (Schizocladia ischiensis KU_0333)
TTTTTCATATCCCCCCCTCTTTGTTTTTTGTTGTTTGATGTGATAATCAC
TAATACGATATCACTCAATCCTTAAATGGGATAACCAATAATACTTTGAA
GTACAAGAAAACACCCAATCCTTAAATGGGATAACCAATAATATTTCGAA
GTACAAGAACACTCAATCTCGCACACGTGCGATTGTTCCTCGTTACAATT
TACATGAATCATTTACCTCGTACATGAATCACCCCACAGGGGCTGGCTGG
GGCCCGGCGTGGGGCCAAAGACGGGCTTCCTCGCATGGAGGGCGGTTTCT
GGCCAGAGACCTGCCCACATGTGCTGCTGGATCCTTACATGGGATAACCA
CTAATGTTGTACGAGAACACTCAATCTCACACACGTGCGATTGCAAATGC
CTCGATACAATTTATATTCATCATCCCACAGGTGCTGGCCGGGGCCCGAC
GTGGGGCCAAAGACGGTCTTCATCGCGTGGAGGGCGGTTTCTGGCCGGAG
ACCTTCCCGTATGTGCTGCTGGATCTTTTTGCATGGGATAGCCACTAATA
TGAGAACACTCAATATCACACATGCGAGATTGTACTTCGTTGCAATTTAC
ATTAATCACCCCACAGGTCCTGGCCGGGGCCCGACGTGGGGCCAAAGACG
GGCTTCATCGCGTGGAGGGTGGGTTCTGCCCAGGGACATTCCCGTATGTG
GTACTGGACCCGCCTTGTTCCGCCCTGGGTCTGCGTCCCCGCCTGGTTGT
GGAGGATGTGGACATGGACAAAGGCATCCTCCCAATCGCAAAGCTACAAG
TAAGTGTTAGGGTTGGTGTTCCCTAACCCTAACCGTACCCCTAACCCCGA
CATGGACAGAGGCCTGCTCCCAATAGCCAAGCTACAAGTAAGTGCTCCAG
TTTGGGTTAGGGTTCGCAAAGCCTCAAGTAAGTTAGGGTTAGTGTTAGCC
CTAGCCCTAGCCCTGAGCCCTAATGTAGACATGGAGAAAGGCCTGCTCCC
AATTGCCAGGCTACAGGTAAGCAATTCATCTGACGGTGTCTGTCCTCCCT
ACCTCGGCTTGTTTTAACAAATGCCAAGCTACAAGTAAGTACACCTGGTC
ATCTAATTCATCTGACAGTGCCTACAGTAAGTGCACCCGGTTGGTTCATC
TGACAGTGTCTGTCCTCCCTACCTCGCCTTGTTCCCCCCTTCCCCACTGT
CTCATCCATCCCTCCCTCCCTCCTTCCCTCCCCCCTTCTTTCCCCTTCTT
CAAGTTGCTCCCTAGCTCTTGGTCCCACTCCTCACCTGTTTGTCCTCCGC
CCATTCCCTTAACCCCCCCCCCCGCGCGCGCGTGCCTGGGCCCTCCCTCC
CTCCCATTTCCTTCTCTCCTTGCAGAAGCAGCTGCTGCGCTCAGCAGTGC
GCCTTCTGGCCCCCGGGGGCACATTGGTGTATTCCACATGTACCGTGGGT
GAGTGGGTGTTCTTCTCTTTTTCATTGGTGTATTCTACCCGCGCCGTGGG
TGAGTGGGTGCTGTCTGTTTCGTCTGCTCTTTTGGAATGGGCCACATTGG
TGTATTCCACGTGCACCGTGGGTTTGTGACTGTTCCTCTCTTTTACATTG
ATGTATTCCACATGCACCGTGGGTGAGTGAGTGTTGTTATCTTTCGGAAT
GGCCTGCTGGTGCACGCTGCTGCTGTAGTTCCTGGGTGTTCGGAGCATGT
ACTTCCAAGTACGTACTTCCGAGTAGGTACTTCCAAGTACTGTACACTAT
ATACTCGTACTGGGTATGTACTGGCGTTGTGCTTGCCGTAGTCCCGAGAC
CATTCACAATATAGCGCCCTTGATGACACATACTCGTACAATACAAGTAC
AACTATATACAATCTGTGTAAGTTTAGACCTACGGTAGTCAGTACTTGTA
TTGCTACGAGTAGCGCACTACAGTACTTGTACTCGTACTTTAGTGGTGCC
GCCTGAGCAGTACTCCAGTACTCGTACAGGTAGAGTACTCTCATTGCAGC
TCATGCTATCCACTACGCAATTTGCTCGAGTACAGACTAGTGTACATAGA
GTACAGTATAGCAGTAGTGCATACTTCCAAGTGCTTGGTGCCTCTCACTT
CCAAGTACCTTGTAACATCTTGTACTTCAAGCACAGCAATCGTCTTCAAC
GACTCTCCTCCCCCGCGCACCTTGGAATGTGCACCAACTTCATCTCCTCC
ATCGTATACTGTATACTGTACACTAGACTGCTGTACCGTAACTCTCCACA
TCAAATCATCGGTGTGTGTGTGTGTTGTGTGTGTGATGTGATGTGCACAC
AAAAGCACTGCAGTTTGACATCACATCACATCACATCGCATCAAATTACC
GCCCCGCCATCCTCTGAGTGCTACCTACACTTCTCCCGTGCCCCCCCTCC
CCTCCCCTGCACGCCGACACCCCCTTCAGGGTTGGCACTTGACCCCTGAG
TGGTGCCCTTGTAGGCAGTTAGTTAGAGGTGATTAGGGGTAATTAGACCT
AAAATGAAGGCTAATTAGGCCCTAATCAACCTCTAAGTGCCAACACTACC
CCCTTGGCAGATCCCCTGGAAAATGAGGGCCTGGTGCGCCATGCCTTGGA
CACCTACCCCTGCCTGCAGCTGGTGCCAGCAGAGCCAAGAGTGCCGGGCA
CATCACGACCGGGCCTGGCCGGCTGTGGTCTCGGGGAGCGCGAGCGACAA
ATGATTCAGCGATTTGACCCCACGCTTCCCATGGTGTCAGCCCGCCATGA
AACTGAAACTGGCTCGGAGGGCACCGTCTGTAGCAGCGGGGGAGATACCA
TCGGGTTCTTTATCGCCAAATTTGTCAAGGTGGGAGTCTAGAGTACCATA
ATCGTCGGAGAGATCTTGCCCCCCCATGCCAATTTTCGGGAGAACTTTTC
TTGCCGAGTACCGGTCGGATTCGCGCGGAAAAACTCGGAAGATCTCCCTC
AGGACCTGGGGGAAGTTTTCGGAGATTTTTTGGGACAATTCAGGACCTTC
CCGGCTAGAATTATTCCCCCGAAACTTGGCCCGTGGGGGCAAAATCTCTC
CGATGACTACGGTAGACGAGGGCTCGCCTCCGTAAGGGAAGTGAAGTGTG
AGTACAGTAGGTATGCTGTGTACGTACTCGTACTTGAAAGTACCTACTAC
TGTACTCGAGTACACGTATTCCAGGGTACAGTACAATACTACTTGGAAGT
ACCTACTGTACTTCGAGTAGAAAGTGCCTGCACGAGAAACATCTCCAGGC
TTGCCATGACTGTGGGGGTGGGCGTTTCCTTCAGCTTGATGAAGCCCAAG
CCGCCCACCGTATCCAAGCCCGCAAAACTCCGGAAAACGGCTCCGTGCGG
CTGCTTGGGCGGTGTGCCAGTGCAGCCCTGTGGGTCCTGTCCTCGCCAGG
CACTCCAGGTGGTCCGCGGAGCCTTAGAGCTACGCCACGACAGCGGAACG
TTATTGCCTGCCCAACGTTGACGTGCTTGCTCATCTGCATGCCCGCCCCC
CGTGGCCGCAAGTCGCTCAAGGACGTCACCCCCGAAGCCCTTCCCCGCCT
GGAAGGTGGTGCGGCCCGGGGAAGGACCCGCTCAGCCGCGGCCGCGGTGC
TTGCGCCAGCGGCGGCCAGAAGCTCGGCGTGCTCAGTGCGGGCACGAGCG
GGTCCTTCACCGGGCCGCACCACCTTGTAGGCAGGGAAGGACTTGGGGGG
TGACGTCCTTGAGCGACTGACGGCCACCGCGGGCGAGCATGCAGATGAGC
AAGTCAACCTTGGGTAGGCAATAGCGTTCCACCGTCGTGATGTAGCTCCA
AGGCTCCACGGGCCGCGTGGAGCGCCTGGTGAGGACAGGACCCGCAGGGC
TGCACTGCCACACCGCCCCAAGCAGCCGCGTGGTGCCACTTTCCGGAGTT
GTGTTGAAATGTGGTGGGCGGCTTCATCAAGCTGAAGGAGAATCTGATGC
CCACCCCGACGGTCATGGCAAACAAGTCTGCTCATGTTTCTCATGCAGGC
ACTTAGTAATTTAGGCTGCGAAGTATGTACGTGTACTCTACTATGTAGGA
AATGGTGCCCATGGGTCGCCCAGGGGGCCCGGGCAGCCCCTCCCAGTTTG
AATGTTTTAATTTAGTTGCAGTGTCCCCGGCGTGCCTTAGACGGGGAGAC
CCAGGGGTGGACACGGCAGTGTTTAGCACATGTGCACACACCTTGCAAGG
CGCGCCTGGAGTGTTAGAATTAGAGATGCTTGGAAGAGCGAGCGAGTTTT
GTGTGTACAAGTCCCGGGCCTATTTGGGATGCGAGAGTCCATGGCTAGCT
ACCTACTCCTGTCGGAGGGCAAACCCGAAGTTTCGACTTAGGGCTGTCAG
CATTGCACGCAAGGACATGTCGCAAGACAAGCCAATGAGTACACACAAAG
GCCCAGCTCGCTTCAGCGTGATATTCAAGAGACGTCATGTATCCACTAGA
GAGGCGCACTGCAGTCACTGTCTCATGATGAACTTGGAGAGGCGTGTGGC
CCAGGCAGGCGGGGGTCATCAGCCAGGACCATGACAACGTCCACACACGC
TCAGTTGGTTTGCTG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig115:99780..104344+

>mRNA_S-ischiensis_contig115.2469.1 ID=mRNA_S-ischiensis_contig115.2469.1|Name=mRNA_S-ischiensis_contig115.2469.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1476bp|location=Sequence derived from alignment at S-ischiensis_contig115:99780..104344+ (Schizocladia ischiensis KU_0333)
ATGCGAGATTGTACTTCGTTGCAATTTACATTAATCACCCCACAGGTCCT
GGCCGGGGCCCGACGTGGGGCCAAAGACGGGCTTCATCGCGTGGAGGGTG
GGTTCTGCCCAGGGACATTCCCGTATGTGGTACTGGACCCGCCTTGTTCC
GCCCTGGGTCTGCGTCCCCGCCTGGTTGTGGAGGATGTGGACATGGACAA
AGGCATCCTCCCAATCGCAAAGCTACAAATGCGAGATTGTACTTCGTTGC
AATTTACATTAATCACCCCACAGGTCCTGGCCGGGGCCCGACGTGGGGCC
AAAGACGGGCTTCATCGCGTGGAGGGTGGGTTCTGCCCAGGGACATTCCC
GTATGTGGTACTGGACCCGCCTTGTTCCGCCCTGGGTCTGCGTCCCCGCC
TGGTTGTGGAGGATGTGGACATGGACAAAGGCATCCTCCCAATCGCAAAG
CTACAAAAGCAGCTGCTGCGCTCAGCAGTGCGCCTTCTGGCCCCCGGGGG
CACATTGGTGTATTCCACATGTACCGTGGAAGCAGCTGCTGCGCTCAGCA
GTGCGCCTTCTGGCCCCCGGGGGCACATTGGTGTATTCCACATGTACCGT
GGATCCCCTGGAAAATGAGGGCCTGGTGCGCCATGCCTTGGACACCTACC
CCTGCCTGCAGCTGGTGCCAGCAGAGCCAAGAGTGCCGGGCACATCACGA
CCGGGCCTGGCCGGCTGTGGTCTCGGGGAGCGCGAGCGACAAATGATTCA
GCGATTTGACCCCACGCTTCCCATGGTGTCAGCCCGCCATGAAACTGAAA
CTGGCTCGGAGGGCACCGTCTGTAGCAGCGGGGGAGATACCATCGGGTTC
TTTATCGCCAAATTTGTCAAGATCCCCTGGAAAATGAGGGCCTGGTGCGC
CATGCCTTGGACACCTACCCCTGCCTGCAGCTGGTGCCAGCAGAGCCAAG
AGTGCCGGGCACATCACGACCGGGCCTGGCCGGCTGTGGTCTCGGGGAGC
GCGAGCGACAAATGATTCAGCGATTTGACCCCACGCTTCCCATGGTGTCA
GCCCGCCATGAAACTGAAACTGGCTCGGAGGGCACCGTCTGTAGCAGCGG
GGGAGATACCATCGGGTTCTTTATCGCCAAATTTGTCAAGGCAATAGCGT
TCCACCGTCGTGATGTAGCTCCAAGGCTCCACGGGCCGCGTGGAGCGCCT
GGTGAGGACAGGACCCGCAGGGCTGCACTGCCACACCGCCCCAAGCAGCC
GCGTGGTGCCACTTTCCGGAGTTGTGTTGAAATGTGGTGGGCGGCTTCAT
CAAGCTGAGCAATAGCGTTCCACCGTCGTGATGTAGCTCCAAGGCTCCAC
GGGCCGCGTGGAGCGCCTGGTGAGGACAGGACCCGCAGGGCTGCACTGCC
ACACCGCCCCAAGCAGCCGCGTGGTGCCACTTTCCGGAGTTGTGTTGAAA
TGTGGTGGGCGGCTTCATCAAGCTGA
back to top