mRNA_S-ischiensis_contig115.2467.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig115.2467.1
Unique NamemRNA_S-ischiensis_contig115.2467.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig115.2467.1 vs. uniprot
Match: D8LLD9_ECTSI (Putative PKG-Ib n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLD9_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 2.980e-36
Identity = 68/113 (60.18%), Postives = 85/113 (75.22%), Query Frame = 1 
Query:    1 MGDAKAAEPPPGVRPIWIQMKNFETYKLRKEGSEGLN--DLVPWALAKRDALLDEIGKFGFMCDFNDYKADLQSCPTEDILLVRDTEKEFGEDWYFTYTAAAFEERLALVRAE 333
            MG+ K   PPPG RPIWIQMKN++ Y+LR+EG+E  N   L  + L  R  LL+E+GKFGFMCD+ND+KADL++CPTE+ILLV D  K +GE WYFT+TA AFE +L L  AE
Sbjct:   79 MGEEKEV-PPPGCRPIWIQMKNYDLYQLREEGAEAGNMTALKQYTLLDRARLLEEVGKFGFMCDWNDFKADLEACPTEEILLVADPNKVYGEQWYFTFTAEAFETQLKLQTAE 190
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BLAST of mRNA_S-ischiensis_contig115.2467.1 vs. uniprot
Match: A0A6H5JTY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTY6_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 5.530e-36
Identity = 68/113 (60.18%), Postives = 84/113 (74.34%), Query Frame = 1 
Query:    1 MGDAKAAEPPPGVRPIWIQMKNFETYKLRKEGSEGLN--DLVPWALAKRDALLDEIGKFGFMCDFNDYKADLQSCPTEDILLVRDTEKEFGEDWYFTYTAAAFEERLALVRAE 333
            MG+ K   PPPG RPIWIQMKN++ Y+LR+EG+E  N   L  + L  R  LL+E+GKFGFMCD+ND+KADL++CPTE ILLV D  K +GE WYFT+TA AFE +L L  AE
Sbjct:   37 MGEEKEV-PPPGCRPIWIQMKNYDLYQLREEGAEAGNMTALKQYTLLDRARLLEEVGKFGFMCDWNDFKADLEACPTEQILLVADPNKMYGEQWYFTFTAEAFETQLKLQTAE 148
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BLAST of mRNA_S-ischiensis_contig115.2467.1 vs. uniprot
Match: A0A836CJ73_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ73_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 5.750e-22
Identity = 50/95 (52.63%), Postives = 62/95 (65.26%), Query Frame = 1 
Query:   25 PPPGVRPIWIQMKNFETYKLRKEGSEGLNDLVP-WALAKRDALLDEIGKFGFMCDFNDYKADLQSCPTEDILLVRDTEKEFGEDWYFTYTAAAFE 306
            PP GV+PIWIQ KN+ TY L   GS  L    P   L KR  LL +I K+GFM DFNDYK DL+    ED+LLV D ++ +GEDWYF +T  A++
Sbjct:   14 PPDGVKPIWIQAKNYATYGL---GS--LETGYPSHVLLKRADLLTDIDKYGFMNDFNDYKVDLKKYKGEDVLLVHDEKRTYGEDWYFCFTQEAYD 103
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BLAST of mRNA_S-ischiensis_contig115.2467.1 vs. uniprot
Match: A0A0G4FYU7_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FYU7_9ALVE)

HSP 1 Score: 54.7 bits (130), Expect = 2.720e-6
Identity = 30/92 (32.61%), Postives = 48/92 (52.17%), Query Frame = 1 
Query:   34 GVRPIWIQMKNFETYKLRK--EGSEGLNDLVPWALAKRDALLDEIGKFGFMCDFNDYKADLQSCPTEDILLVRDTEKEFGEDWYFTYTAAAF 303
            GV   ++   N     L+   E  EG      +   K+   LDE  KFGF  D+ND++  ++  P EDI+LVRD E+ +G+++ + Y  A +
Sbjct:   55 GVGEFFVNATNMVRMGLKDNDEQEEGRK----YVYVKKQEALDECAKFGFQSDWNDHRDLIKKYPHEDIILVRDPERVYGQNYAWGYNGAGY 142
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BLAST of mRNA_S-ischiensis_contig115.2467.1 vs. uniprot
Match: A0A6J8ETD3_MYTCO (WD repeat-containing protein 63 n=2 Tax=Mytilus TaxID=6548 RepID=A0A6J8ETD3_MYTCO)

HSP 1 Score: 53.9 bits (128), Expect = 5.010e-6
Identity = 31/107 (28.97%), Postives = 60/107 (56.07%), Query Frame = 1 
Query:    7 DAKAAEP---PPGVRPIWIQMKNFETYKLRKEGSEGLNDLVPWALAKRDALLDEIGKFGFMCDFNDYKADLQSCPTEDILLVRDTEKEFGEDWYFTYTAAAFEERLA 318
            DA+A E    P GV P+++  K  E +  R +    + +  P  +  +D +++++     +CDF   K D+ + PT++IL+V D+E ++G+++Y   T  A E+ L+
Sbjct:  104 DAEATEEEGLPEGVVPLFLSSKTQEIFHCRMDEDVTIEN--PIKIITKDEIMEDLRMRAGVCDFAPLKQDIINYPTDEILVVFDSEFKYGQNFYIALTEEAKEKILS 208
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BLAST of mRNA_S-ischiensis_contig115.2467.1 vs. uniprot
Match: A0A812IBE8_9DINO (DNAI3 protein n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A812IBE8_9DINO)

HSP 1 Score: 50.8 bits (120), Expect = 5.980e-5
Identity = 39/121 (32.23%), Postives = 63/121 (52.07%), Query Frame = 1 
Query:    1 MGDAKAAEPPPGVRPIWIQMKNFETYKLRKEGSEGLNDLVPWA---------LAKRDALLDEIGKFGFMCDFNDYKADLQSCPTEDILLVRDTEKEFGEDWYFTYTAAAFE---ERLALVR 327
            MG    A    G++ I+I  KN+ +  L  E  E  +D VP++         LAK + +LD++ + GF  D++  + D +  P EDIL++ D  K +GE   +  T  A++   ERLA +R
Sbjct:   57 MGTCPPAAGESGLKGIFINAKNYLSLGLVDEVDE--SDDVPFSGMKLKPFFHLAKSE-VLDQVKRMGFASDYHPQQKDFEKYPLEDILVLFDPTKAYGEKLVWCTTEEAYKREMERLAELR 174
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig115.2467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LLD9_ECTSI2.980e-3660.18Putative PKG-Ib n=1 Tax=Ectocarpus siliculosus Tax... [more]
A0A6H5JTY6_9PHAE5.530e-3660.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CJ73_9STRA5.750e-2252.63Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0G4FYU7_9ALVE2.720e-632.61Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A6J8ETD3_MYTCO5.010e-628.97WD repeat-containing protein 63 n=2 Tax=Mytilus Ta... [more]
A0A812IBE8_9DINO5.980e-532.23DNAI3 protein n=3 Tax=Symbiodinium TaxID=2949 RepI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig115contigS-ischiensis_contig115:67206..68001 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.1
Seed ortholog evalue1.6e-31
Seed eggNOG ortholog2880.D8LLD9
Preferred nameWDR63
KEGG koko:K07376,ko:K17770
KEGG TC3.A.8.1
KEGG Pathwayko04022,ko04270,ko04540,ko04611,ko04713,ko04714,ko04730,ko04740,ko04923,ko04970,map04022,map04270,map04540,map04611,map04713,map04714,map04730,map04740,map04923,map04970
KEGG ModuleM00694
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005856,GO:0005875,GO:0006928,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0015630,GO:0030286,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0045503,GO:0045504,GO:1902494
EggNOG free text desc.dynein heavy chain binding
EggNOG OGsKOG1587@1,KOG1587@2759
EC2.7.11.12
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko02000,ko03029
Hectar predicted targeting categoryother localisation
Exons2
Model size336
Cds size336
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815627.5037825-CDS-S-ischiensis_contig115:67205..674061622815627.5037825-CDS-S-ischiensis_contig115:67205..67406Schizocladia ischiensis KU_0333CDSS-ischiensis_contig115 67206..67406 +
1695739813.4207847-CDS-S-ischiensis_contig115:67205..674061695739813.4207847-CDS-S-ischiensis_contig115:67205..67406Schizocladia ischiensis KU_0333CDSS-ischiensis_contig115 67206..67406 +
1622815627.5137403-CDS-S-ischiensis_contig115:67866..680011622815627.5137403-CDS-S-ischiensis_contig115:67866..68001Schizocladia ischiensis KU_0333CDSS-ischiensis_contig115 67867..68001 +
1695739813.4437277-CDS-S-ischiensis_contig115:67866..680011695739813.4437277-CDS-S-ischiensis_contig115:67866..68001Schizocladia ischiensis KU_0333CDSS-ischiensis_contig115 67867..68001 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig115.2467.1prot_S-ischiensis_contig115.2467.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig115 67206..68001 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig115.2467.1

>prot_S-ischiensis_contig115.2467.1 ID=prot_S-ischiensis_contig115.2467.1|Name=mRNA_S-ischiensis_contig115.2467.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=112bp
MGDAKAAEPPPGVRPIWIQMKNFETYKLRKEGSEGLNDLVPWALAKRDAL
LDEIGKFGFMCDFNDYKADLQSCPTEDILLVRDTEKEFGEDWYFTYTAAA
FEERLALVRAEE
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mRNA from alignment at S-ischiensis_contig115:67206..68001+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig115.2467.1 ID=mRNA_S-ischiensis_contig115.2467.1|Name=mRNA_S-ischiensis_contig115.2467.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=796bp|location=Sequence derived from alignment at S-ischiensis_contig115:67206..68001+ (Schizocladia ischiensis KU_0333)
ATGGGCGACGCCAAGGCGGCAGAGCCGCCTCCGGGCGTGCGTCCAATATG
GATCCAGATGAAGAACTTCGAGACGTACAAACTCCGGAAGGAGGGGTCGG
AGGGTCTGAACGACCTCGTGCCGTGGGCGCTGGCAAAGCGCGACGCCTTG
CTGGACGAGATTGGGAAGTTTGGCTTTATGTGCGACTTCAACGACTACAA
GGTACGGCTTCTATGTAGGTCGTGGCTTACGGCAGAGAAAATTTGGGTTA
CTGGTGTGCCACGTCTAGCCCCTTTGCTTTACACCGCGGAGGTTCCGCTG
GGGACCACATCAACCACCCTCAACAACTGGCCATATTCCCGGCGGCATCC
GTCTGCGGCCGGAAAAGGGTGTCATAGGTCGGCATACATGGTGTGTGTTT
CTCCGAAAAGCGCCATCTGCGCGTATGTGGCTGCCCTCAACCCACCTCTT
GCAGTGACGGAATATCGATCAGTAGATAGCTATCGGGCTCGACTAGTTTG
CGGGTGGCATTACCAACTACTTCGCACTTGGATCTAGTGCGGGTCAAACT
ATCGAATATCGACTATCGATGGAGTTACAGATCAGTACCGTTGATAAATA
GGTTGATTTGCTTAGATATTCCATCACTGCCCTCTTGGCCTCTGCTGCGC
TGATCCTCCAGGCGGACTTGCAGTCATGCCCGACGGAAGACATCCTCCTG
GTGAGGGACACCGAGAAGGAGTTTGGCGAAGACTGGTACTTCACCTACAC
TGCAGCGGCCTTTGAGGAGCGTTTGGCGCTCGTACGAGCAGAGGAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig115:67206..68001+

>mRNA_S-ischiensis_contig115.2467.1 ID=mRNA_S-ischiensis_contig115.2467.1|Name=mRNA_S-ischiensis_contig115.2467.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=672bp|location=Sequence derived from alignment at S-ischiensis_contig115:67206..68001+ (Schizocladia ischiensis KU_0333)
ATGGGCGACGCCAAGGCGGCAGAGCCGCCTCCGGGCGTGCGTCCAATATG
GATCCAGATGAAGAACTTCGAGACGTACAAACTCCGGAAGGAGGGGTCGG
AGGGTCTGAACGACCTCGTGCCGTGGGCGCTGGCAAAGCGCGACGCCTTG
CTGGACGAGATTGGGAAGTTTGGCTTTATGTGCGACTTCAACGACTACAA
GATGGGCGACGCCAAGGCGGCAGAGCCGCCTCCGGGCGTGCGTCCAATAT
GGATCCAGATGAAGAACTTCGAGACGTACAAACTCCGGAAGGAGGGGTCG
GAGGGTCTGAACGACCTCGTGCCGTGGGCGCTGGCAAAGCGCGACGCCTT
GCTGGACGAGATTGGGAAGTTTGGCTTTATGTGCGACTTCAACGACTACA
AGGCGGACTTGCAGTCATGCCCGACGGAAGACATCCTCCTGGTGAGGGAC
ACCGAGAAGGAGTTTGGCGAAGACTGGTACTTCACCTACACTGCAGCGGC
CTTTGAGGAGCGTTTGGCGCTCGTACGAGCAGAGGAGGCGGACTTGCAGT
CATGCCCGACGGAAGACATCCTCCTGGTGAGGGACACCGAGAAGGAGTTT
GGCGAAGACTGGTACTTCACCTACACTGCAGCGGCCTTTGAGGAGCGTTT
GGCGCTCGTACGAGCAGAGGAG
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