mRNA_S-ischiensis_contig113.2456.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig113.2456.1
Unique NamemRNA_S-ischiensis_contig113.2456.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig113.2456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig113contigS-ischiensis_contig113:137710..138401 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size692
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig113.2456.1prot_S-ischiensis_contig113.2456.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig113 137999..138352 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815625.4685588-UTR-S-ischiensis_contig113:137709..1379981622815625.4685588-UTR-S-ischiensis_contig113:137709..137998Schizocladia ischiensis KU_0333UTRS-ischiensis_contig113 137710..137998 +
1695739812.0383067-UTR-S-ischiensis_contig113:137709..1379981695739812.0383067-UTR-S-ischiensis_contig113:137709..137998Schizocladia ischiensis KU_0333UTRS-ischiensis_contig113 137710..137998 +
1622815625.4978511-UTR-S-ischiensis_contig113:138352..1384011622815625.4978511-UTR-S-ischiensis_contig113:138352..138401Schizocladia ischiensis KU_0333UTRS-ischiensis_contig113 138353..138401 +
1695739812.0644884-UTR-S-ischiensis_contig113:138352..1384011695739812.0644884-UTR-S-ischiensis_contig113:138352..138401Schizocladia ischiensis KU_0333UTRS-ischiensis_contig113 138353..138401 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815625.4818413-CDS-S-ischiensis_contig113:137998..1383521622815625.4818413-CDS-S-ischiensis_contig113:137998..138352Schizocladia ischiensis KU_0333CDSS-ischiensis_contig113 137999..138352 +
1695739812.05415-CDS-S-ischiensis_contig113:137998..1383521695739812.05415-CDS-S-ischiensis_contig113:137998..138352Schizocladia ischiensis KU_0333CDSS-ischiensis_contig113 137999..138352 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig113.2456.1

>prot_S-ischiensis_contig113.2456.1 ID=prot_S-ischiensis_contig113.2456.1|Name=mRNA_S-ischiensis_contig113.2456.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=118bp
MTHLNECVRRLLMCICAAQRRFLHGVHARPAWRRVDPLWCLEHVPGIDDG
FPTYDYLIFPRGPLRSRVPRTAQLLYYYSSVAVVGAFLRAVLLDFLGRDT
APGPTAEAPPDQSLRLQ*
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mRNA from alignment at S-ischiensis_contig113:137710..138401+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig113.2456.1 ID=mRNA_S-ischiensis_contig113.2456.1|Name=mRNA_S-ischiensis_contig113.2456.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=692bp|location=Sequence derived from alignment at S-ischiensis_contig113:137710..138401+ (Schizocladia ischiensis KU_0333)
TAGGGGCACACAGGGAGGCGGGGTGAGGCTTAACGAGCGTGACCGGCTTG
AGCAGCAAGAGCCGGTGGGGAGGAGACTGACGAGGGATTGGAGGGAATGG
CTTCCAAGTATTTATTTATCTATCTGCGGGGGCGGCGGCATTGCAAGCAC
AAACGCCAGGCGGGCCCGCCCCTGGCTCGAGCTCTCAAGGCTTGCCCGAC
GTTATTATGGCAGTACAGTGGCAGTACGGTAGCAGTACAGCAGCAGTACA
GCTCCTGCTACATAGTGCATAGGCACTTTGGGAGACTGTATGACACACCT
GAATGAGTGCGTGCGGCGCCTGCTCATGTGCATTTGCGCCGCCCAGAGAC
GCTTCCTTCATGGCGTGCACGCGCGCCCCGCCTGGCGGCGAGTAGACCCG
CTTTGGTGCCTCGAGCACGTACCGGGGATTGATGACGGTTTCCCCACATA
CGATTATCTAATTTTTCCCCGGGGCCCACTGCGCTCCCGAGTACCACGCA
CAGCGCAGCTACTCTACTACTATAGTAGTGTTGCAGTAGTAGGTGCTTTC
CTTCGTGCTGTTCTCTTAGACTTTCTTGGCAGAGATACTGCACCTGGGCC
AACGGCGGAGGCGCCGCCAGACCAGAGCCTGCGCTTACAATAGATGCTGG
TATCGCGGCCCGCGGTGGCTGCGGGTGACAACTCACGGGTCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig113:137710..138401+

>mRNA_S-ischiensis_contig113.2456.1 ID=mRNA_S-ischiensis_contig113.2456.1|Name=mRNA_S-ischiensis_contig113.2456.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=708bp|location=Sequence derived from alignment at S-ischiensis_contig113:137710..138401+ (Schizocladia ischiensis KU_0333)
ATGACACACCTGAATGAGTGCGTGCGGCGCCTGCTCATGTGCATTTGCGC
CGCCCAGAGACGCTTCCTTCATGGCGTGCACGCGCGCCCCGCCTGGCGGC
GAGTAGACCCGCTTTGGTGCCTCGAGCACGTACCGGGGATTGATGACGGT
TTCCCCACATACGATTATCTAATTTTTCCCCGGGGCCCACTGCGCTCCCG
AGTACCACGCACAGCGCAGCTACTCTACTACTATAGTAGTGTTGCAGTAG
TAGGTGCTTTCCTTCGTGCTGTTCTCTTAGACTTTCTTGGCAGAGATACT
GCACCTGGGCCAACGGCGGAGGCGCCGCCAGACCAGAGCCTGCGCTTACA
ATAGATGACACACCTGAATGAGTGCGTGCGGCGCCTGCTCATGTGCATTT
GCGCCGCCCAGAGACGCTTCCTTCATGGCGTGCACGCGCGCCCCGCCTGG
CGGCGAGTAGACCCGCTTTGGTGCCTCGAGCACGTACCGGGGATTGATGA
CGGTTTCCCCACATACGATTATCTAATTTTTCCCCGGGGCCCACTGCGCT
CCCGAGTACCACGCACAGCGCAGCTACTCTACTACTATAGTAGTGTTGCA
GTAGTAGGTGCTTTCCTTCGTGCTGTTCTCTTAGACTTTCTTGGCAGAGA
TACTGCACCTGGGCCAACGGCGGAGGCGCCGCCAGACCAGAGCCTGCGCT
TACAATAG
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