mRNA_S-ischiensis_contig113.2446.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig113.2446.1
Unique NamemRNA_S-ischiensis_contig113.2446.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig113.2446.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig113contigS-ischiensis_contig113:49216..49651 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size436
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig113.2446.1prot_S-ischiensis_contig113.2446.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig113 49305..49616 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815625.2827485-UTR-S-ischiensis_contig113:49215..493041622815625.2827485-UTR-S-ischiensis_contig113:49215..49304Schizocladia ischiensis KU_0333UTRS-ischiensis_contig113 49216..49304 +
1695739811.9419515-UTR-S-ischiensis_contig113:49215..493041695739811.9419515-UTR-S-ischiensis_contig113:49215..49304Schizocladia ischiensis KU_0333UTRS-ischiensis_contig113 49216..49304 +
1622815625.306049-UTR-S-ischiensis_contig113:49616..496511622815625.306049-UTR-S-ischiensis_contig113:49616..49651Schizocladia ischiensis KU_0333UTRS-ischiensis_contig113 49617..49651 +
1695739811.959014-UTR-S-ischiensis_contig113:49616..496511695739811.959014-UTR-S-ischiensis_contig113:49616..49651Schizocladia ischiensis KU_0333UTRS-ischiensis_contig113 49617..49651 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815625.2930002-CDS-S-ischiensis_contig113:49304..496161622815625.2930002-CDS-S-ischiensis_contig113:49304..49616Schizocladia ischiensis KU_0333CDSS-ischiensis_contig113 49305..49616 +
1695739811.9505467-CDS-S-ischiensis_contig113:49304..496161695739811.9505467-CDS-S-ischiensis_contig113:49304..49616Schizocladia ischiensis KU_0333CDSS-ischiensis_contig113 49305..49616 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig113.2446.1

>prot_S-ischiensis_contig113.2446.1 ID=prot_S-ischiensis_contig113.2446.1|Name=mRNA_S-ischiensis_contig113.2446.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=104bp
MEFEEITVTVLNRPYRFRHGNVHRLDGRRHGGALVVRTTIKPEGGPAAAT
GARPVARDSMKAAAQGAALFLPAGRRRHQHCRQCRRRPAVGIRTHSNRMC
SLV*
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mRNA from alignment at S-ischiensis_contig113:49216..49651+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig113.2446.1 ID=mRNA_S-ischiensis_contig113.2446.1|Name=mRNA_S-ischiensis_contig113.2446.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=436bp|location=Sequence derived from alignment at S-ischiensis_contig113:49216..49651+ (Schizocladia ischiensis KU_0333)
CCAAGCTGTACACCACGAATGGCCATTTCGAGGTGTACCGCTTGCCGTGA
ACAGATTCCCGAAAAGGCCCGGGGGGCTCCTGCCTGGCCATGGAGTTTGA
GGAGATCACTGTCACGGTTCTCAACAGACCCTATCGTTTCAGGCACGGGA
ATGTTCACCGTTTGGACGGCCGCCGCCACGGCGGCGCCCTTGTGGTCCGT
ACCACCATCAAGCCCGAGGGTGGGCCTGCCGCTGCTACCGGGGCGCGGCC
CGTGGCGAGGGACAGTATGAAAGCGGCGGCGCAGGGTGCGGCGCTTTTTT
TGCCAGCCGGTCGCCGGCGTCACCAACACTGCCGCCAGTGCCGGCGCCGC
CCTGCCGTTGGCATTCGTACGCATTCGAACAGGATGTGCTCACTTGTGTA
GACAGATCTGACTTGGTTCGGACTCTGTCGGGCCTG
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Coding sequence (CDS) from alignment at S-ischiensis_contig113:49216..49651+

>mRNA_S-ischiensis_contig113.2446.1 ID=mRNA_S-ischiensis_contig113.2446.1|Name=mRNA_S-ischiensis_contig113.2446.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=624bp|location=Sequence derived from alignment at S-ischiensis_contig113:49216..49651+ (Schizocladia ischiensis KU_0333)
ATGGAGTTTGAGGAGATCACTGTCACGGTTCTCAACAGACCCTATCGTTT
CAGGCACGGGAATGTTCACCGTTTGGACGGCCGCCGCCACGGCGGCGCCC
TTGTGGTCCGTACCACCATCAAGCCCGAGGGTGGGCCTGCCGCTGCTACC
GGGGCGCGGCCCGTGGCGAGGGACAGTATGAAAGCGGCGGCGCAGGGTGC
GGCGCTTTTTTTGCCAGCCGGTCGCCGGCGTCACCAACACTGCCGCCAGT
GCCGGCGCCGCCCTGCCGTTGGCATTCGTACGCATTCGAACAGGATGTGC
TCACTTGTGTAGATGGAGTTTGAGGAGATCACTGTCACGGTTCTCAACAG
ACCCTATCGTTTCAGGCACGGGAATGTTCACCGTTTGGACGGCCGCCGCC
ACGGCGGCGCCCTTGTGGTCCGTACCACCATCAAGCCCGAGGGTGGGCCT
GCCGCTGCTACCGGGGCGCGGCCCGTGGCGAGGGACAGTATGAAAGCGGC
GGCGCAGGGTGCGGCGCTTTTTTTGCCAGCCGGTCGCCGGCGTCACCAAC
ACTGCCGCCAGTGCCGGCGCCGCCCTGCCGTTGGCATTCGTACGCATTCG
AACAGGATGTGCTCACTTGTGTAG
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