mRNA_S-ischiensis_contig110.2419.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig110.2419.1 vs. uniprot
Match: A0A7S6U9T5_9STRA (Acetohydroxy-acid synthase small subunit n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9T5_9STRA) HSP 1 Score: 375 bits (964), Expect = 2.910e-126 Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 2
Query: 602 MIIKRTFSIKVEEERGVLVRVASLVSRREFTIVSIAIGPTEQKGISRISLVFIEKEKQIEFDRVRQLMQHLRKLINVLDVIDLTFIPSIEKELILIKIQCSSEERKEILEIANSFNLVVVDFAKNCLTLEIVTDSKKFSIIHKILSRYNVIEQVHSGTIGLTRQSSDNKDWDHIGYTTWKKIQEXXXXXXXXKNYLAAIEKEQEEKEKAE 1231
MIIKRTFSIKVEEERGVLVRVASLVSRREFTIVSIAIGPTEQKGISRISLVFIEKEKQIEFDRVRQLMQHLRKLINVLDVIDLTFIPSIEKELILIKIQCSSEERKEILEIANSFNLVVVDFAKNCLTLEIVTDSKKFSIIHKILSRYNVIEQVHSGTIGLTRQSSDNKDWDHIGYTTWKKIQEXXXXXXXXKNYLAAIEKEQEEKEKAE
Sbjct: 1 MIIKRTFSIKVEEERGVLVRVASLVSRREFTIVSIAIGPTEQKGISRISLVFIEKEKQIEFDRVRQLMQHLRKLINVLDVIDLTFIPSIEKELILIKIQCSSEERKEILEIANSFNLVVVDFAKNCLTLEIVTDSKKFSIIHKILSRYNVIEQVHSGTIGLTRQSSDNKDWDHIGYTTWKKIQEXXXXXXXXKNYLAAIEKEQEEKEKAE 210
BLAST of mRNA_S-ischiensis_contig110.2419.1 vs. uniprot
Match: A0A7S6U9T3_9STRA (50S ribosomal protein L20, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9T3_9STRA) HSP 1 Score: 215 bits (548), Expect = 1.920e-65 Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 2
Query: 155 MVRVKRGNVARKRRKKIIKLAKGFCGAHSRLFRIANQQVMKSLVYSYRGRKEKKRKFRQLWIVRINSVVRNHNKKYSQFIHDLKTSNILINRKMLSQLAITDPSSFSKLLNNIS 496
MVRVKRGNVARKRRKKIIKLAKGFCGAHSRLFRIANQQVMKSLVYSYRGRKEKKRKFRQLWIVRINSVVRNHNKKYSQFIHDLKTSNILINRKMLSQLAITDPSSFSKLLNNIS
Sbjct: 1 MVRVKRGNVARKRRKKIIKLAKGFCGAHSRLFRIANQQVMKSLVYSYRGRKEKKRKFRQLWIVRINSVVRNHNKKYSQFIHDLKTSNILINRKMLSQLAITDPSSFSKLLNNIS 114
BLAST of mRNA_S-ischiensis_contig110.2419.1 vs. uniprot
Match: A0A0R6M3F2_UNDPI (50S ribosomal protein L20, chloroplastic n=26 Tax=Laminariales TaxID=2886 RepID=A0A0R6M3F2_UNDPI) HSP 1 Score: 166 bits (421), Expect = 1.320e-46 Identity = 85/110 (77.27%), Postives = 98/110 (89.09%), Query Frame = 2
Query: 155 MVRVKRGNVARKRRKKIIKLAKGFCGAHSRLFRIANQQVMKSLVYSYRGRKEKKRKFRQLWIVRINSVVRNHNKKYSQFIHDLKTSNILINRKMLSQLAITDPSSFSKLL 484
MVRVKRGNVAR RR KI+KLAKGFCGAHS LFR+ANQQV+KSL+Y+YRGRKEKKR FRQLWI RIN+ V N+N KYS+FIH+LK S IL+NRKMLSQLAI DPS+FS ++
Sbjct: 1 MVRVKRGNVARNRRNKILKLAKGFCGAHSSLFRVANQQVIKSLIYAYRGRKEKKRIFRQLWITRINAAVSNYNLKYSKFIHNLKRSKILLNRKMLSQLAILDPSAFSSIV 110
BLAST of mRNA_S-ischiensis_contig110.2419.1 vs. uniprot
Match: A0A8E5XRD5_9PHAE (50S ribosomal protein L20, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRD5_9PHAE) HSP 1 Score: 163 bits (413), Expect = 1.980e-45 Identity = 83/111 (74.77%), Postives = 95/111 (85.59%), Query Frame = 2
Query: 155 MVRVKRGNVARKRRKKIIKLAKGFCGAHSRLFRIANQQVMKSLVYSYRGRKEKKRKFRQLWIVRINSVVRNHNKKYSQFIHDLKTSNILINRKMLSQLAITDPSSFSKLLN 487
MVR+KRGNVARKRRKKI+ LAKGFCG+HS LFR+ANQQV+KSL+Y+Y GRKEKKR FRQLWI RIN VRN+ YS+F H LK SNIL+NRKMLSQLAI DPS FS L++
Sbjct: 1 MVRIKRGNVARKRRKKILNLAKGFCGSHSSLFRVANQQVLKSLLYAYIGRKEKKRMFRQLWITRINGAVRNYGTNYSKFTHSLKVSNILLNRKMLSQLAIIDPSGFSSLVS 111
BLAST of mRNA_S-ischiensis_contig110.2419.1 vs. uniprot
Match: A0A8F0FB19_9PHAE (50S ribosomal protein L20 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FB19_9PHAE) HSP 1 Score: 161 bits (408), Expect = 1.070e-44 Identity = 84/110 (76.36%), Postives = 96/110 (87.27%), Query Frame = 2
Query: 155 MVRVKRGNVARKRRKKIIKLAKGFCGAHSRLFRIANQQVMKSLVYSYRGRKEKKRKFRQLWIVRINSVVRNHNKKYSQFIHDLKTSNILINRKMLSQLAITDPSSFSKLL 484
MVRVKRGNVAR RR KI++LAKGFCGAHS LFRIANQQV+KSLVYSY GRKEKKR FRQLWI RIN+ R +N KYS+FIH+LK S +L+NRKMLSQLAI DPS+FS ++
Sbjct: 1 MVRVKRGNVARNRRNKILRLAKGFCGAHSSLFRIANQQVIKSLVYSYIGRKEKKRIFRQLWITRINAAARQYNLKYSRFIHNLKRSKVLLNRKMLSQLAILDPSAFSYIV 110
BLAST of mRNA_S-ischiensis_contig110.2419.1 vs. uniprot
Match: D1J766_ECTSI (50S ribosomal protein L20, chloroplastic n=9 Tax=Ectocarpales TaxID=2877 RepID=D1J766_ECTSI) HSP 1 Score: 159 bits (403), Expect = 5.790e-44 Identity = 81/110 (73.64%), Postives = 98/110 (89.09%), Query Frame = 2
Query: 155 MVRVKRGNVARKRRKKIIKLAKGFCGAHSRLFRIANQQVMKSLVYSYRGRKEKKRKFRQLWIVRINSVVRNHNKKYSQFIHDLKTSNILINRKMLSQLAITDPSSFSKLL 484
MVRVKRGNVARKRR KI+KLAKGFCG+HS LFRIANQQV+KSL+Y+Y GRK+KKR FRQLWI RIN+ V+++N KY++FIH+LK S I++NRKMLSQLAI DP +FS L+
Sbjct: 1 MVRVKRGNVARKRRNKILKLAKGFCGSHSSLFRIANQQVIKSLLYAYSGRKKKKRVFRQLWITRINAAVKHYNLKYNEFIHNLKKSKIILNRKMLSQLAILDPPAFSALV 110
BLAST of mRNA_S-ischiensis_contig110.2419.1 vs. uniprot
Match: A0A8F0JZA2_9PHAE (50S ribosomal protein L20 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0JZA2_9PHAE) HSP 1 Score: 158 bits (400), Expect = 1.590e-43 Identity = 81/107 (75.70%), Postives = 93/107 (86.92%), Query Frame = 2
Query: 155 MVRVKRGNVARKRRKKIIKLAKGFCGAHSRLFRIANQQVMKSLVYSYRGRKEKKRKFRQLWIVRINSVVRNHNKKYSQFIHDLKTSNILINRKMLSQLAITDPSSFS 475
MVRVKRGNVARKRR KI+KLAKGFCGAHS LFRIANQQV+KSL+Y+YRGRKEKKR FRQLWI RIN+ +N YS+FIH+LK + +L+NRKMLSQLAI DP +FS
Sbjct: 1 MVRVKRGNVARKRRNKILKLAKGFCGAHSSLFRIANQQVIKSLIYAYRGRKEKKRMFRQLWITRINAAASYYNLNYSRFIHNLKQAKVLLNRKMLSQLAILDPPAFS 107
BLAST of mRNA_S-ischiensis_contig110.2419.1 vs. uniprot
Match: A0A8E5BDH4_9PHAE (Ribosomal protein L20 n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E5BDH4_9PHAE) HSP 1 Score: 153 bits (387), Expect = 1.440e-41 Identity = 81/113 (71.68%), Postives = 94/113 (83.19%), Query Frame = 2
Query: 155 MVRVKRGNVARKRRKKIIKLAKGFCGAHSRLFRIANQQVMKSLVYSYRGRKEKKRKFRQLWIVRINSVVRNHNKKYSQFIHDLKTSNILINRKMLSQLAITDPSSFSKLLNNI 493
M+RVKRGN+ARKRRKKI+KLAKGF G HS LFR+ANQQV+KSL Y+Y GRK+KKR FRQLWI RIN+ VR ++ YS+FI LK NIL+NRKMLSQ+AI DP SF KLLN I
Sbjct: 1 MIRVKRGNIARKRRKKILKLAKGFAGTHSSLFRVANQQVLKSLTYAYVGRKKKKRVFRQLWISRINAAVRKYDITYSEFIFKLKKKNILLNRKMLSQIAILDPISFLKLLNVI 113
BLAST of mRNA_S-ischiensis_contig110.2419.1 vs. uniprot
Match: A0A1N7TJI7_9PHAE (50S ribosomal protein L20 n=1 Tax=Coccophora langsdorfii TaxID=74099 RepID=A0A1N7TJI7_9PHAE) HSP 1 Score: 152 bits (385), Expect = 2.490e-41 Identity = 83/110 (75.45%), Postives = 93/110 (84.55%), Query Frame = 2
Query: 155 MVRVKRGNVARKRRKKIIKLAKGFCGAHSRLFRIANQQVMKSLVYSYRGRKEKKRKFRQLWIVRINSVVRNHNKKYSQFIHDLKTSNILINRKMLSQLAITDPSSFSKLL 484
MVRVKRGNVARKRRKKI+KLA+GF G S LFRIANQQVMKSLVY+Y GRK+KKR FR+LWI RINS R +N KYS FI+ LK S IL+NRKMLSQLAI DPS+FS L+
Sbjct: 1 MVRVKRGNVARKRRKKILKLAQGFRGPQSSLFRIANQQVMKSLVYAYIGRKKKKRVFRKLWITRINSSTRQYNMKYSHFIYKLKQSKILLNRKMLSQLAILDPSAFSNLI 110
BLAST of mRNA_S-ischiensis_contig110.2419.1 vs. uniprot
Match: B7T1Y7_VAULI (50S ribosomal protein L20, chloroplastic n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T1Y7_VAULI) HSP 1 Score: 152 bits (383), Expect = 5.030e-41 Identity = 79/113 (69.91%), Postives = 95/113 (84.07%), Query Frame = 2
Query: 155 MVRVKRGNVARKRRKKIIKLAKGFCGAHSRLFRIANQQVMKSLVYSYRGRKEKKRKFRQLWIVRINSVVRNHNKKYSQFIHDLKTSNILINRKMLSQLAITDPSSFSKLLNNI 493
MVR+KRGNVA+KRRKKI+ LAKG+ GAHSRLFR+ANQQVMKSL YSY RK+KKRKFRQLWI RINS R + KYS FI++LK S IL+NRKMLSQL+I DP++F+ L+ +
Sbjct: 1 MVRIKRGNVAKKRRKKILNLAKGYQGAHSRLFRLANQQVMKSLRYSYMNRKQKKRKFRQLWITRINSSTRFNQTKYSTFIYNLKQSKILLNRKMLSQLSIIDPTAFTNLITTV 113 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig110.2419.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig110.2419.1 >prot_S-ischiensis_contig110.2419.1 ID=prot_S-ischiensis_contig110.2419.1|Name=mRNA_S-ischiensis_contig110.2419.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=240bp MIIKRTFSIKVEEERGVLVRVASLVSRREFTIVSIAIGPTEQKGISRISLback to top mRNA from alignment at S-ischiensis_contig110:131819..133251+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig110.2419.1 ID=mRNA_S-ischiensis_contig110.2419.1|Name=mRNA_S-ischiensis_contig110.2419.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1433bp|location=Sequence derived from alignment at S-ischiensis_contig110:131819..133251+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig110:131819..133251+ >mRNA_S-ischiensis_contig110.2419.1 ID=mRNA_S-ischiensis_contig110.2419.1|Name=mRNA_S-ischiensis_contig110.2419.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1440bp|location=Sequence derived from alignment at S-ischiensis_contig110:131819..133251+ (Schizocladia ischiensis KU_0333)back to top |