mRNA_S-ischiensis_contig110.2416.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig110.2416.1
Unique NamemRNA_S-ischiensis_contig110.2416.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig110.2416.1 vs. uniprot
Match: A0A7S6U9S9_9STRA (50S ribosomal protein L27, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9S9_9STRA)

HSP 1 Score: 140 bits (354), Expect = 2.540e-42
Identity = 69/70 (98.57%), Postives = 70/70 (100.00%), Query Frame = 1 
Query:    1 LAHKKGAGSTKNGRDSNSKRLGVKCFGGHKVSAGSIIVRQRGLTFKPGINVGVGKDYTIYALKSGLVYFN 210
            +AHKKGAGSTKNGRDSNSKRLGVKCFGGHKVSAGSIIVRQRGLTFKPGINVGVGKDYTIYALKSGLVYFN
Sbjct:    1 MAHKKGAGSTKNGRDSNSKRLGVKCFGGHKVSAGSIIVRQRGLTFKPGINVGVGKDYTIYALKSGLVYFN 70
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BLAST of mRNA_S-ischiensis_contig110.2416.1 vs. uniprot
Match: A0A2R4QPT1_9PHAE (50S ribosomal protein L27 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPT1_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 6.090e-34
Identity = 55/69 (79.71%), Postives = 63/69 (91.30%), Query Frame = 1 
Query:    1 LAHKKGAGSTKNGRDSNSKRLGVKCFGGHKVSAGSIIVRQRGLTFKPGINVGVGKDYTIYALKSGLVYF 207
            +AHKKGAGSTKNGRDS  KRLGVKCF GH+V AG+I++RQRGLTFKPG NVG+GKDYT+YALK G+VYF
Sbjct:    1 MAHKKGAGSTKNGRDSKPKRLGVKCFHGHQVKAGNILIRQRGLTFKPGDNVGIGKDYTLYALKEGMVYF 69
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BLAST of mRNA_S-ischiensis_contig110.2416.1 vs. uniprot
Match: A0A141BSB3_9PHAE (50S ribosomal protein L27, chloroplastic n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSB3_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 7.120e-33
Identity = 54/69 (78.26%), Postives = 63/69 (91.30%), Query Frame = 1 
Query:    1 LAHKKGAGSTKNGRDSNSKRLGVKCFGGHKVSAGSIIVRQRGLTFKPGINVGVGKDYTIYALKSGLVYF 207
            +AHKKGAGSTKNGRDS SKRLGVKCF GH+V AG+I++RQRGL FKPG NVG+G+DYT+YALK GLV+F
Sbjct:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFHGHQVRAGNILIRQRGLKFKPGQNVGIGRDYTLYALKEGLVFF 69
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BLAST of mRNA_S-ischiensis_contig110.2416.1 vs. uniprot
Match: A0A6P0NBT8_9CYAN (50S ribosomal protein L27 n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0NBT8_9CYAN)

HSP 1 Score: 116 bits (291), Expect = 9.830e-33
Identity = 53/69 (76.81%), Postives = 63/69 (91.30%), Query Frame = 1 
Query:    1 LAHKKGAGSTKNGRDSNSKRLGVKCFGGHKVSAGSIIVRQRGLTFKPGINVGVGKDYTIYALKSGLVYF 207
            +AHKKGAGSTKNGRDS +KRLGVKCF GH+V AG+IIVRQRGL+FKPG  +GVGKDYT+YALK G+V++
Sbjct:    1 MAHKKGAGSTKNGRDSKAKRLGVKCFSGHRVGAGNIIVRQRGLSFKPGAQIGVGKDYTLYALKEGVVFY 69
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BLAST of mRNA_S-ischiensis_contig110.2416.1 vs. uniprot
Match: A0A8F0F6S3_AKKLU (Ribosomal protein L27 n=2 Tax=Phaeophyceae TaxID=2870 RepID=A0A8F0F6S3_AKKLU)

HSP 1 Score: 116 bits (291), Expect = 1.010e-32
Identity = 54/69 (78.26%), Postives = 63/69 (91.30%), Query Frame = 1 
Query:    1 LAHKKGAGSTKNGRDSNSKRLGVKCFGGHKVSAGSIIVRQRGLTFKPGINVGVGKDYTIYALKSGLVYF 207
            +AHKKGAGSTKNGRDS SKRLGVKCF GHKV AG+I++RQRGL++KPG NVG+G+DYT+YALK GLV F
Sbjct:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFQGHKVQAGNILIRQRGLSYKPGENVGIGRDYTLYALKEGLVSF 69
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BLAST of mRNA_S-ischiensis_contig110.2416.1 vs. uniprot
Match: A0A8F0F9K0_9PHAE (Ribosomal protein L27 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F9K0_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 1.480e-32
Identity = 55/69 (79.71%), Postives = 62/69 (89.86%), Query Frame = 1 
Query:    1 LAHKKGAGSTKNGRDSNSKRLGVKCFGGHKVSAGSIIVRQRGLTFKPGINVGVGKDYTIYALKSGLVYF 207
            +AHKKGAGSTKNGRDS SKRLGVKCF GH V AG+I++RQRGL+FKPG NVGVG+DYT+YALK GLV F
Sbjct:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFQGHPVQAGNILIRQRGLSFKPGSNVGVGRDYTLYALKEGLVSF 69
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BLAST of mRNA_S-ischiensis_contig110.2416.1 vs. uniprot
Match: A0A8F0F794_9PHAE (Ribosomal protein L27 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F794_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 2.040e-32
Identity = 54/69 (78.26%), Postives = 62/69 (89.86%), Query Frame = 1 
Query:    1 LAHKKGAGSTKNGRDSNSKRLGVKCFGGHKVSAGSIIVRQRGLTFKPGINVGVGKDYTIYALKSGLVYF 207
            +AHKKGAGSTKNGRDS SKRLGVKCF GH+V AG+I++RQRGL+FKPG NVG GKDYT+YALK G V+F
Sbjct:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFQGHQVQAGNILIRQRGLSFKPGENVGTGKDYTLYALKEGSVFF 69
[Close]
BLAST of mRNA_S-ischiensis_contig110.2416.1 vs. uniprot
Match: A0A2I4Q2P8_9PHAE (50S ribosomal protein L27 n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2P8_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 5.860e-32
Identity = 53/70 (75.71%), Postives = 63/70 (90.00%), Query Frame = 1 
Query:    1 LAHKKGAGSTKNGRDSNSKRLGVKCFGGHKVSAGSIIVRQRGLTFKPGINVGVGKDYTIYALKSGLVYFN 210
            +AHKKGAGSTKNGRDSNSKRLGVKCF G KV AG+I++RQRGL FKPG++VGVGKDYT+YALK G+  ++
Sbjct:    1 MAHKKGAGSTKNGRDSNSKRLGVKCFHGQKVQAGNILIRQRGLHFKPGLHVGVGKDYTLYALKQGMTVYS 70
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BLAST of mRNA_S-ischiensis_contig110.2416.1 vs. uniprot
Match: A0A0R6MBY3_UNDPI (50S ribosomal protein L27, chloroplastic n=23 Tax=Laminariales TaxID=2886 RepID=A0A0R6MBY3_UNDPI)

HSP 1 Score: 114 bits (286), Expect = 6.200e-32
Identity = 54/69 (78.26%), Postives = 62/69 (89.86%), Query Frame = 1 
Query:    1 LAHKKGAGSTKNGRDSNSKRLGVKCFGGHKVSAGSIIVRQRGLTFKPGINVGVGKDYTIYALKSGLVYF 207
            +AHKKGAGSTKNGRDS SKRLGVKCF GH V AG+I++RQRGL+FKPG NVG+GKDYT+YAL +GLV F
Sbjct:    1 MAHKKGAGSTKNGRDSKSKRLGVKCFQGHPVEAGNILIRQRGLSFKPGDNVGIGKDYTLYALTAGLVSF 69
[Close]
BLAST of mRNA_S-ischiensis_contig110.2416.1 vs. uniprot
Match: A0A6B7EYQ0_9PHAE (50S ribosomal protein L27 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EYQ0_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 3.890e-31
Identity = 54/69 (78.26%), Postives = 61/69 (88.41%), Query Frame = 1 
Query:    1 LAHKKGAGSTKNGRDSNSKRLGVKCFGGHKVSAGSIIVRQRGLTFKPGINVGVGKDYTIYALKSGLVYF 207
            +AHKKGAGSTKNGRDSNSKRLGVKCF GHKV AGSI++RQRG TF+PG NVG+G+DYT+YA   GLV F
Sbjct:    1 MAHKKGAGSTKNGRDSNSKRLGVKCFHGHKVQAGSILIRQRGETFEPGKNVGIGRDYTLYASVDGLVSF 69
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig110.2416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S6U9S9_9STRA2.540e-4298.5750S ribosomal protein L27, chloroplastic n=1 Tax=S... [more]
A0A2R4QPT1_9PHAE6.090e-3479.7150S ribosomal protein L27 n=3 Tax=Fucaceae TaxID=3... [more]
A0A141BSB3_9PHAE7.120e-3378.2650S ribosomal protein L27, chloroplastic n=14 Tax=... [more]
A0A6P0NBT8_9CYAN9.830e-3376.8150S ribosomal protein L27 n=1 Tax=Moorena sp. SIO3... [more]
A0A8F0F6S3_AKKLU1.010e-3278.26Ribosomal protein L27 n=2 Tax=Phaeophyceae TaxID=2... [more]
A0A8F0F9K0_9PHAE1.480e-3279.71Ribosomal protein L27 n=2 Tax=Laminariales TaxID=2... [more]
A0A8F0F794_9PHAE2.040e-3278.26Ribosomal protein L27 n=1 Tax=Protohalopteris sp. ... [more]
A0A2I4Q2P8_9PHAE5.860e-3275.7150S ribosomal protein L27 n=1 Tax=Dictyopteris div... [more]
A0A0R6MBY3_UNDPI6.200e-3278.2650S ribosomal protein L27, chloroplastic n=23 Tax=... [more]
A0A6B7EYQ0_9PHAE3.890e-3178.2650S ribosomal protein L27 n=1 Tax=Cladosiphon okam... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig110contigS-ischiensis_contig110:116737..116946 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.9
Seed ortholog evalue2.4e-22
Seed eggNOG ortholog2880.D1J768
Preferred namerpl27
KEGG koko:K02899
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
GOsGO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009579,GO:0009719,GO:0009725,GO:0009735,GO:0009941,GO:0010033,GO:0031967,GO:0031975,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050896
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0211@1,KOG4600@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosomal protein L27
Ec32 orthologEc-14_006180.1
Exons1
Model size210
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815621.7514575-CDS-S-ischiensis_contig110:116736..1169461622815621.7514575-CDS-S-ischiensis_contig110:116736..116946Schizocladia ischiensis KU_0333CDSS-ischiensis_contig110 116737..116946 +
1695739809.7851574-CDS-S-ischiensis_contig110:116736..1169461695739809.7851574-CDS-S-ischiensis_contig110:116736..116946Schizocladia ischiensis KU_0333CDSS-ischiensis_contig110 116737..116946 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig110.2416.1prot_S-ischiensis_contig110.2416.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig110 116737..116946 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig110.2416.1

>prot_S-ischiensis_contig110.2416.1 ID=prot_S-ischiensis_contig110.2416.1|Name=mRNA_S-ischiensis_contig110.2416.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=70bp
LAHKKGAGSTKNGRDSNSKRLGVKCFGGHKVSAGSIIVRQRGLTFKPGIN
VGVGKDYTIYALKSGLVYFN
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mRNA from alignment at S-ischiensis_contig110:116737..116946+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig110.2416.1 ID=mRNA_S-ischiensis_contig110.2416.1|Name=mRNA_S-ischiensis_contig110.2416.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=210bp|location=Sequence derived from alignment at S-ischiensis_contig110:116737..116946+ (Schizocladia ischiensis KU_0333)
TTGGCACACAAGAAAGGAGCAGGGAGTACGAAAAATGGTCGTGATTCTAA
TTCAAAACGATTAGGAGTAAAGTGTTTTGGGGGTCATAAAGTAAGTGCCG
GATCAATTATTGTAAGACAACGAGGTTTAACTTTTAAGCCTGGTATTAAT
GTAGGAGTAGGTAAAGATTACACAATTTATGCATTAAAATCAGGTTTGGT
TTATTTTAAT
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Coding sequence (CDS) from alignment at S-ischiensis_contig110:116737..116946+

>mRNA_S-ischiensis_contig110.2416.1 ID=mRNA_S-ischiensis_contig110.2416.1|Name=mRNA_S-ischiensis_contig110.2416.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=420bp|location=Sequence derived from alignment at S-ischiensis_contig110:116737..116946+ (Schizocladia ischiensis KU_0333)
TTGGCACACAAGAAAGGAGCAGGGAGTACGAAAAATGGTCGTGATTCTAA
TTCAAAACGATTAGGAGTAAAGTGTTTTGGGGGTCATAAAGTAAGTGCCG
GATCAATTATTGTAAGACAACGAGGTTTAACTTTTAAGCCTGGTATTAAT
GTAGGAGTAGGTAAAGATTACACAATTTATGCATTAAAATCAGGTTTGGT
TTATTTTAATTTGGCACACAAGAAAGGAGCAGGGAGTACGAAAAATGGTC
GTGATTCTAATTCAAAACGATTAGGAGTAAAGTGTTTTGGGGGTCATAAA
GTAAGTGCCGGATCAATTATTGTAAGACAACGAGGTTTAACTTTTAAGCC
TGGTATTAATGTAGGAGTAGGTAAAGATTACACAATTTATGCATTAAAAT
CAGGTTTGGTTTATTTTAAT
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