mRNA_S-ischiensis_contig110.2407.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig110.2407.1
Unique NamemRNA_S-ischiensis_contig110.2407.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig110.2407.1 vs. uniprot
Match: A0A7S6ZPB1_9STRA (30S ribosomal protein S8, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6ZPB1_9STRA)

HSP 1 Score: 266 bits (681), Expect = 2.140e-90
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 1
Query:    1 MTTDNIADMLTRIRNANLVRHQIVQVLKTKMTLSVSKILKEEGYITDFEEFEDKNKNYLLLCLKYHGQNRQPIISAIKRISKPGLRIYVDKKNLPNVLSNLGIAIISTSKGVMTNHKARELGVGGEVICYIW 396
            MTTDNIADMLTRIRNANLVRHQIVQVLKTKMTLSVSKILKEEGYITDFEEFEDKNKNYLLLCLKYHGQNRQPIISAIKRISKPGLRIYVDKKNLPNVLSNLGIAIISTSKGVMTNHKARELGVGGEVICYIW
Sbjct:    1 MTTDNIADMLTRIRNANLVRHQIVQVLKTKMTLSVSKILKEEGYITDFEEFEDKNKNYLLLCLKYHGQNRQPIISAIKRISKPGLRIYVDKKNLPNVLSNLGIAIISTSKGVMTNHKARELGVGGEVICYIW 132          
BLAST of mRNA_S-ischiensis_contig110.2407.1 vs. uniprot
Match: A0A6B9TPR3_SARFS (30S ribosomal protein S8, chloroplastic n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A6B9TPR3_SARFS)

HSP 1 Score: 221 bits (563), Expect = 2.120e-72
Identity = 103/132 (78.03%), Postives = 120/132 (90.91%), Query Frame = 1
Query:    1 MTTDNIADMLTRIRNANLVRHQIVQVLKTKMTLSVSKILKEEGYITDFEEFEDKNKNYLLLCLKYHGQNRQPIISAIKRISKPGLRIYVDKKNLPNVLSNLGIAIISTSKGVMTNHKARELGVGGEVICYIW 396
            MTTD IADMLTRIRNANLVRHQIV+V+KTK+  S++KILKEEGYI+ FEE E  NK YLLLCLKYH Q R+PII+ IKRISKPGLR+YV+K NLPN+L+NLGIAI+STSKG++TNHKAR+LG+GGEVICYIW
Sbjct:    1 MTTDRIADMLTRIRNANLVRHQIVRVIKTKIIFSLTKILKEEGYISSFEEIEIDNKKYLLLCLKYHNQKREPIITGIKRISKPGLRVYVNKSNLPNILNNLGIAILSTSKGIITNHKARKLGIGGEVICYIW 132          
BLAST of mRNA_S-ischiensis_contig110.2407.1 vs. uniprot
Match: A0A8F0F790_9PHAE (Ribosomal protein S8 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F790_9PHAE)

HSP 1 Score: 214 bits (546), Expect = 8.260e-70
Identity = 101/132 (76.52%), Postives = 120/132 (90.91%), Query Frame = 1
Query:    1 MTTDNIADMLTRIRNANLVRHQIVQVLKTKMTLSVSKILKEEGYITDFEEFEDKNKNYLLLCLKYHGQNRQPIISAIKRISKPGLRIYVDKKNLPNVLSNLGIAIISTSKGVMTNHKARELGVGGEVICYIW 396
            M  D+IADMLTRIRNANLVRHQIVQ+LKTK+TLS+S+ILKEEGYI++FEE E  N+ YLLLCLKYH + RQPII+ +KRISKPGLRIYV  KNLP V++NLGIAI+STSKG++TN+KA++LGVGGEVICYIW
Sbjct:    1 MPIDSIADMLTRIRNANLVRHQIVQILKTKITLSISQILKEEGYISNFEEIEISNRKYLLLCLKYHSKKRQPIITELKRISKPGLRIYVSNKNLPTVVNNLGIAIMSTSKGILTNNKAKKLGVGGEVICYIW 132          
BLAST of mRNA_S-ischiensis_contig110.2407.1 vs. uniprot
Match: A0A2R4QQ52_9PHAE (30S ribosomal protein S8 n=4 Tax=Phaeophyceae TaxID=2870 RepID=A0A2R4QQ52_9PHAE)

HSP 1 Score: 212 bits (539), Expect = 8.450e-69
Identity = 99/127 (77.95%), Postives = 115/127 (90.55%), Query Frame = 1
Query:   16 IADMLTRIRNANLVRHQIVQVLKTKMTLSVSKILKEEGYITDFEEFEDKNKNYLLLCLKYHGQNRQPIISAIKRISKPGLRIYVDKKNLPNVLSNLGIAIISTSKGVMTNHKARELGVGGEVICYIW 396
            IAD LTRIRNANLVRHQIV+V+KTK+T SV KILKEEGYI+ FEE E  NK YLLLCLKYH Q RQPII+ IKRISKPGLRIYV+K NLPN+L+NLG+AI+STSKG++TN+KA++LG+GGEVICYIW
Sbjct:    2 IADTLTRIRNANLVRHQIVRVIKTKITFSVIKILKEEGYISSFEEIETNNKKYLLLCLKYHSQKRQPIITGIKRISKPGLRIYVNKNNLPNILNNLGVAILSTSKGILTNNKAKKLGIGGEVICYIW 128          
BLAST of mRNA_S-ischiensis_contig110.2407.1 vs. uniprot
Match: A0A1I9LVH6_9PHAE (30S ribosomal protein S8, chloroplastic n=33 Tax=Phaeophyceae TaxID=2870 RepID=A0A1I9LVH6_9PHAE)

HSP 1 Score: 211 bits (536), Expect = 2.760e-68
Identity = 100/132 (75.76%), Postives = 118/132 (89.39%), Query Frame = 1
Query:    1 MTTDNIADMLTRIRNANLVRHQIVQVLKTKMTLSVSKILKEEGYITDFEEFEDKNKNYLLLCLKYHGQNRQPIISAIKRISKPGLRIYVDKKNLPNVLSNLGIAIISTSKGVMTNHKARELGVGGEVICYIW 396
            MTTD +AD LTRIRNAN+VRHQIV+V+ TK+T +V KILKEEGYI+ FEE E  N+ YLLLCLKYH Q RQPII+ IKRISKPGLRIYV+K NLPNVL+NLGIAI+STSKG++TN+KA++LGVGGE+ICYIW
Sbjct:    1 MTTDILADTLTRIRNANMVRHQIVRVINTKITFAVVKILKEEGYISKFEEIEIANRKYLLLCLKYHIQKRQPIITGIKRISKPGLRIYVNKSNLPNVLNNLGIAILSTSKGILTNNKAKKLGVGGEIICYIW 132          
BLAST of mRNA_S-ischiensis_contig110.2407.1 vs. uniprot
Match: A0A2I4Q355_9PHAE (30S ribosomal protein S8, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q355_9PHAE)

HSP 1 Score: 206 bits (523), Expect = 2.640e-66
Identity = 96/132 (72.73%), Postives = 119/132 (90.15%), Query Frame = 1
Query:    1 MTTDNIADMLTRIRNANLVRHQIVQVLKTKMTLSVSKILKEEGYITDFEEFEDKNKNYLLLCLKYHGQNRQPIISAIKRISKPGLRIYVDKKNLPNVLSNLGIAIISTSKGVMTNHKARELGVGGEVICYIW 396
            MTTD IADMLTRIRNANLVRH++VQV+KT +T+SV++ILKEEGYI D+EE E   K+YLLL LKY+ Q RQPII+ +KR+SKPGLRIYV+K NLP V++NLGIAI+STSKG++TN+KA++LGVGGEV+CYIW
Sbjct:    1 MTTDIIADMLTRIRNANLVRHRLVQVIKTNLTISVTQILKEEGYIADYEEIELSKKSYLLLSLKYYNQKRQPIITGLKRVSKPGLRIYVNKNNLPIVINNLGIAILSTSKGILTNNKAKKLGVGGEVLCYIW 132          
BLAST of mRNA_S-ischiensis_contig110.2407.1 vs. uniprot
Match: B7T1X1_VAULI (30S ribosomal protein S8, chloroplastic n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T1X1_VAULI)

HSP 1 Score: 206 bits (523), Expect = 2.640e-66
Identity = 94/132 (71.21%), Postives = 116/132 (87.88%), Query Frame = 1
Query:    1 MTTDNIADMLTRIRNANLVRHQIVQVLKTKMTLSVSKILKEEGYITDFEEFEDKNKNYLLLCLKYHGQNRQPIISAIKRISKPGLRIYVDKKNLPNVLSNLGIAIISTSKGVMTNHKARELGVGGEVICYIW 396
            M  D+I+DMLTR+RNAN+VRHQIV++ KTKMTL+++KILKEEGYI  FEEFE+  +N+LLLCLKY+G  R+PI++ + RISKPGLRIYV+ KN+P VL NLGIAIISTSKGV+TNH A+ LG+GGEVICYIW
Sbjct:    1 MIKDDISDMLTRLRNANMVRHQIVEIPKTKMTLAIAKILKEEGYILKFEEFEENKRNFLLLCLKYNGSKRKPILTTVVRISKPGLRIYVNHKNIPQVLGNLGIAIISTSKGVITNHTAKNLGIGGEVICYIW 132          
BLAST of mRNA_S-ischiensis_contig110.2407.1 vs. uniprot
Match: UPI001EDD1FDE (ribosomal protein S8 n=1 Tax=Thalassionema frauenfeldii TaxID=186022 RepID=UPI001EDD1FDE)

HSP 1 Score: 202 bits (513), Expect = 8.840e-65
Identity = 91/132 (68.94%), Postives = 116/132 (87.88%), Query Frame = 1
Query:    1 MTTDNIADMLTRIRNANLVRHQIVQVLKTKMTLSVSKILKEEGYITDFEEFEDKNKNYLLLCLKYHGQNRQPIISAIKRISKPGLRIYVDKKNLPNVLSNLGIAIISTSKGVMTNHKARELGVGGEVICYIW 396
            M TDNI+D+LTRIRNAN+V+H +VQV  TKM+L++ KILK+EGYI +FE++ + NK YLL+ LKY G+NRQP+IS ++R+SKPGLR+Y +KK LPN+L NLGIAIISTSKGVMTN KA+ELG+GGEV+CYIW
Sbjct:    1 MVTDNISDLLTRIRNANMVKHHVVQVPHTKMSLAIVKILKDEGYIENFEDYAENNKKYLLILLKYFGRNRQPVISKLQRVSKPGLRVYKNKKTLPNILDNLGIAIISTSKGVMTNIKAKELGIGGEVLCYIW 132          
BLAST of mRNA_S-ischiensis_contig110.2407.1 vs. uniprot
Match: A0A8E6D514_9PHAE (30S ribosomal protein S8, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D514_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 3.060e-64
Identity = 94/127 (74.02%), Postives = 110/127 (86.61%), Query Frame = 1
Query:   16 IADMLTRIRNANLVRHQIVQVLKTKMTLSVSKILKEEGYITDFEEFEDKNKNYLLLCLKYHGQNRQPIISAIKRISKPGLRIYVDKKNLPNVLSNLGIAIISTSKGVMTNHKARELGVGGEVICYIW 396
            +ADMLTRIRNANLVRH+IVQ+  TKMTL+++KILKEEGYI+ FEE E  N+ YLLLCLKY+G NR P I  IKRISKPGLRIYV   NLP VLSNLGIAI+STSKG++TN+ A++LG+GGEVICYIW
Sbjct:    1 MADMLTRIRNANLVRHRIVQITNTKMTLAIAKILKEEGYISSFEEIELSNRKYLLLCLKYYGYNRSPTIKGIKRISKPGLRIYVSGDNLPKVLSNLGIAILSTSKGILTNYSAKKLGIGGEVICYIW 127          
BLAST of mRNA_S-ischiensis_contig110.2407.1 vs. uniprot
Match: A0A2U9NNP8_9STRA (30S ribosomal protein S8, chloroplastic n=1 Tax=Licmophora sp. TaxID=2115823 RepID=A0A2U9NNP8_9STRA)

HSP 1 Score: 197 bits (500), Expect = 8.460e-63
Identity = 88/132 (66.67%), Postives = 116/132 (87.88%), Query Frame = 1
Query:    1 MTTDNIADMLTRIRNANLVRHQIVQVLKTKMTLSVSKILKEEGYITDFEEFEDKNKNYLLLCLKYHGQNRQPIISAIKRISKPGLRIYVDKKNLPNVLSNLGIAIISTSKGVMTNHKARELGVGGEVICYIW 396
            M TD I+D+LTRIRNAN+V+HQIVQ+  +KM++S++ ILK+EG+I +FE + +KNKNYLL+ LKY+G+ R+P+I+ +KRISKPGLR+Y + KNLP VL NLGIAIISTS+GVMTN KARELG+GGE++CYIW
Sbjct:    1 MVTDTISDILTRIRNANMVKHQIVQIPTSKMSVSITNILKDEGFIDNFENYTEKNKNYLLISLKYNGKGREPVITKLKRISKPGLRVYANSKNLPIVLDNLGIAIISTSRGVMTNMKARELGIGGEILCYIW 132          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig110.2407.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S6ZPB1_9STRA2.140e-90100.0030S ribosomal protein S8, chloroplastic n=1 Tax=Sc... [more]
A0A6B9TPR3_SARFS2.120e-7278.0330S ribosomal protein S8, chloroplastic n=14 Tax=S... [more]
A0A8F0F790_9PHAE8.260e-7076.52Ribosomal protein S8 n=1 Tax=Protohalopteris sp. T... [more]
A0A2R4QQ52_9PHAE8.450e-6977.9530S ribosomal protein S8 n=4 Tax=Phaeophyceae TaxI... [more]
A0A1I9LVH6_9PHAE2.760e-6875.7630S ribosomal protein S8, chloroplastic n=33 Tax=P... [more]
A0A2I4Q355_9PHAE2.640e-6672.7330S ribosomal protein S8, chloroplastic n=1 Tax=Di... [more]
B7T1X1_VAULI2.640e-6671.2130S ribosomal protein S8, chloroplastic n=1 Tax=Va... [more]
UPI001EDD1FDE8.840e-6568.94ribosomal protein S8 n=1 Tax=Thalassionema frauenf... [more]
A0A8E6D514_9PHAE3.060e-6474.0230S ribosomal protein S8, chloroplastic n=1 Tax=Is... [more]
A0A2U9NNP8_9STRA8.460e-6366.6730S ribosomal protein S8, chloroplastic n=1 Tax=Li... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig110contigS-ischiensis_contig110:72542..72940 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score211.8
Seed ortholog evalue1.9e-52
Seed eggNOG ortholog2880.D1J739
Preferred namerps8
KEGG koko:K02994
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
GOsGO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0015935,GO:0016020,GO:0022626,GO:0022627,GO:0031967,GO:0031975,GO:0032991,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0096@1,KOG1754@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryother localisation
Exons1
Model size399
Cds size399
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815621.366389-CDS-S-ischiensis_contig110:72541..729401622815621.366389-CDS-S-ischiensis_contig110:72541..72940Schizocladia ischiensis KU_0333CDSS-ischiensis_contig110 72542..72940 +
1695739809.5976603-CDS-S-ischiensis_contig110:72541..729401695739809.5976603-CDS-S-ischiensis_contig110:72541..72940Schizocladia ischiensis KU_0333CDSS-ischiensis_contig110 72542..72940 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig110.2407.1prot_S-ischiensis_contig110.2407.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig110 72542..72940 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig110.2407.1

>prot_S-ischiensis_contig110.2407.1 ID=prot_S-ischiensis_contig110.2407.1|Name=mRNA_S-ischiensis_contig110.2407.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=133bp
MTTDNIADMLTRIRNANLVRHQIVQVLKTKMTLSVSKILKEEGYITDFEE
FEDKNKNYLLLCLKYHGQNRQPIISAIKRISKPGLRIYVDKKNLPNVLSN
LGIAIISTSKGVMTNHKARELGVGGEVICYIW*
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mRNA from alignment at S-ischiensis_contig110:72542..72940+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig110.2407.1 ID=mRNA_S-ischiensis_contig110.2407.1|Name=mRNA_S-ischiensis_contig110.2407.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=399bp|location=Sequence derived from alignment at S-ischiensis_contig110:72542..72940+ (Schizocladia ischiensis KU_0333)
ATGACAACAGATAATATAGCGGATATGTTAACTCGCATTCGAAATGCAAA TCTTGTGAGACATCAGATTGTTCAAGTTCTTAAAACGAAAATGACGCTTT CTGTCTCAAAAATTTTGAAAGAAGAAGGTTATATTACGGATTTTGAAGAA TTTGAAGATAAGAACAAAAATTATTTGTTATTATGTCTCAAATATCATGG ACAAAATCGTCAACCCATTATTTCTGCTATTAAAAGAATAAGTAAACCTG GACTACGAATTTATGTTGATAAAAAAAATTTACCCAATGTTTTAAGTAAT TTGGGTATAGCGATAATATCAACATCTAAAGGTGTTATGACTAATCACAA AGCTCGAGAGTTAGGTGTTGGTGGTGAAGTTATTTGTTATATTTGGTAA
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Coding sequence (CDS) from alignment at S-ischiensis_contig110:72542..72940+

>mRNA_S-ischiensis_contig110.2407.1 ID=mRNA_S-ischiensis_contig110.2407.1|Name=mRNA_S-ischiensis_contig110.2407.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=798bp|location=Sequence derived from alignment at S-ischiensis_contig110:72542..72940+ (Schizocladia ischiensis KU_0333)
ATGACAACAGATAATATAGCGGATATGTTAACTCGCATTCGAAATGCAAA
TCTTGTGAGACATCAGATTGTTCAAGTTCTTAAAACGAAAATGACGCTTT
CTGTCTCAAAAATTTTGAAAGAAGAAGGTTATATTACGGATTTTGAAGAA
TTTGAAGATAAGAACAAAAATTATTTGTTATTATGTCTCAAATATCATGG
ACAAAATCGTCAACCCATTATTTCTGCTATTAAAAGAATAAGTAAACCTG
GACTACGAATTTATGTTGATAAAAAAAATTTACCCAATGTTTTAAGTAAT
TTGGGTATAGCGATAATATCAACATCTAAAGGTGTTATGACTAATCACAA
AGCTCGAGAGTTAGGTGTTGGTGGTGAAGTTATTTGTTATATTTGGTAAA
TGACAACAGATAATATAGCGGATATGTTAACTCGCATTCGAAATGCAAAT
CTTGTGAGACATCAGATTGTTCAAGTTCTTAAAACGAAAATGACGCTTTC
TGTCTCAAAAATTTTGAAAGAAGAAGGTTATATTACGGATTTTGAAGAAT
TTGAAGATAAGAACAAAAATTATTTGTTATTATGTCTCAAATATCATGGA
CAAAATCGTCAACCCATTATTTCTGCTATTAAAAGAATAAGTAAACCTGG
ACTACGAATTTATGTTGATAAAAAAAATTTACCCAATGTTTTAAGTAATT
TGGGTATAGCGATAATATCAACATCTAAAGGTGTTATGACTAATCACAAA
GCTCGAGAGTTAGGTGTTGGTGGTGAAGTTATTTGTTATATTTGGTAA
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