mRNA_S-ischiensis_contig110.2407.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig110.2407.1 vs. uniprot
Match: A0A7S6ZPB1_9STRA (30S ribosomal protein S8, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6ZPB1_9STRA) HSP 1 Score: 266 bits (681), Expect = 2.140e-90 Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 1
Query: 1 MTTDNIADMLTRIRNANLVRHQIVQVLKTKMTLSVSKILKEEGYITDFEEFEDKNKNYLLLCLKYHGQNRQPIISAIKRISKPGLRIYVDKKNLPNVLSNLGIAIISTSKGVMTNHKARELGVGGEVICYIW 396
MTTDNIADMLTRIRNANLVRHQIVQVLKTKMTLSVSKILKEEGYITDFEEFEDKNKNYLLLCLKYHGQNRQPIISAIKRISKPGLRIYVDKKNLPNVLSNLGIAIISTSKGVMTNHKARELGVGGEVICYIW
Sbjct: 1 MTTDNIADMLTRIRNANLVRHQIVQVLKTKMTLSVSKILKEEGYITDFEEFEDKNKNYLLLCLKYHGQNRQPIISAIKRISKPGLRIYVDKKNLPNVLSNLGIAIISTSKGVMTNHKARELGVGGEVICYIW 132
BLAST of mRNA_S-ischiensis_contig110.2407.1 vs. uniprot
Match: A0A6B9TPR3_SARFS (30S ribosomal protein S8, chloroplastic n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A6B9TPR3_SARFS) HSP 1 Score: 221 bits (563), Expect = 2.120e-72 Identity = 103/132 (78.03%), Postives = 120/132 (90.91%), Query Frame = 1
Query: 1 MTTDNIADMLTRIRNANLVRHQIVQVLKTKMTLSVSKILKEEGYITDFEEFEDKNKNYLLLCLKYHGQNRQPIISAIKRISKPGLRIYVDKKNLPNVLSNLGIAIISTSKGVMTNHKARELGVGGEVICYIW 396
MTTD IADMLTRIRNANLVRHQIV+V+KTK+ S++KILKEEGYI+ FEE E NK YLLLCLKYH Q R+PII+ IKRISKPGLR+YV+K NLPN+L+NLGIAI+STSKG++TNHKAR+LG+GGEVICYIW
Sbjct: 1 MTTDRIADMLTRIRNANLVRHQIVRVIKTKIIFSLTKILKEEGYISSFEEIEIDNKKYLLLCLKYHNQKREPIITGIKRISKPGLRVYVNKSNLPNILNNLGIAILSTSKGIITNHKARKLGIGGEVICYIW 132
BLAST of mRNA_S-ischiensis_contig110.2407.1 vs. uniprot
Match: A0A8F0F790_9PHAE (Ribosomal protein S8 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F790_9PHAE) HSP 1 Score: 214 bits (546), Expect = 8.260e-70 Identity = 101/132 (76.52%), Postives = 120/132 (90.91%), Query Frame = 1
Query: 1 MTTDNIADMLTRIRNANLVRHQIVQVLKTKMTLSVSKILKEEGYITDFEEFEDKNKNYLLLCLKYHGQNRQPIISAIKRISKPGLRIYVDKKNLPNVLSNLGIAIISTSKGVMTNHKARELGVGGEVICYIW 396
M D+IADMLTRIRNANLVRHQIVQ+LKTK+TLS+S+ILKEEGYI++FEE E N+ YLLLCLKYH + RQPII+ +KRISKPGLRIYV KNLP V++NLGIAI+STSKG++TN+KA++LGVGGEVICYIW
Sbjct: 1 MPIDSIADMLTRIRNANLVRHQIVQILKTKITLSISQILKEEGYISNFEEIEISNRKYLLLCLKYHSKKRQPIITELKRISKPGLRIYVSNKNLPTVVNNLGIAIMSTSKGILTNNKAKKLGVGGEVICYIW 132
BLAST of mRNA_S-ischiensis_contig110.2407.1 vs. uniprot
Match: A0A2R4QQ52_9PHAE (30S ribosomal protein S8 n=4 Tax=Phaeophyceae TaxID=2870 RepID=A0A2R4QQ52_9PHAE) HSP 1 Score: 212 bits (539), Expect = 8.450e-69 Identity = 99/127 (77.95%), Postives = 115/127 (90.55%), Query Frame = 1
Query: 16 IADMLTRIRNANLVRHQIVQVLKTKMTLSVSKILKEEGYITDFEEFEDKNKNYLLLCLKYHGQNRQPIISAIKRISKPGLRIYVDKKNLPNVLSNLGIAIISTSKGVMTNHKARELGVGGEVICYIW 396
IAD LTRIRNANLVRHQIV+V+KTK+T SV KILKEEGYI+ FEE E NK YLLLCLKYH Q RQPII+ IKRISKPGLRIYV+K NLPN+L+NLG+AI+STSKG++TN+KA++LG+GGEVICYIW
Sbjct: 2 IADTLTRIRNANLVRHQIVRVIKTKITFSVIKILKEEGYISSFEEIETNNKKYLLLCLKYHSQKRQPIITGIKRISKPGLRIYVNKNNLPNILNNLGVAILSTSKGILTNNKAKKLGIGGEVICYIW 128
BLAST of mRNA_S-ischiensis_contig110.2407.1 vs. uniprot
Match: A0A1I9LVH6_9PHAE (30S ribosomal protein S8, chloroplastic n=33 Tax=Phaeophyceae TaxID=2870 RepID=A0A1I9LVH6_9PHAE) HSP 1 Score: 211 bits (536), Expect = 2.760e-68 Identity = 100/132 (75.76%), Postives = 118/132 (89.39%), Query Frame = 1
Query: 1 MTTDNIADMLTRIRNANLVRHQIVQVLKTKMTLSVSKILKEEGYITDFEEFEDKNKNYLLLCLKYHGQNRQPIISAIKRISKPGLRIYVDKKNLPNVLSNLGIAIISTSKGVMTNHKARELGVGGEVICYIW 396
MTTD +AD LTRIRNAN+VRHQIV+V+ TK+T +V KILKEEGYI+ FEE E N+ YLLLCLKYH Q RQPII+ IKRISKPGLRIYV+K NLPNVL+NLGIAI+STSKG++TN+KA++LGVGGE+ICYIW
Sbjct: 1 MTTDILADTLTRIRNANMVRHQIVRVINTKITFAVVKILKEEGYISKFEEIEIANRKYLLLCLKYHIQKRQPIITGIKRISKPGLRIYVNKSNLPNVLNNLGIAILSTSKGILTNNKAKKLGVGGEIICYIW 132
BLAST of mRNA_S-ischiensis_contig110.2407.1 vs. uniprot
Match: A0A2I4Q355_9PHAE (30S ribosomal protein S8, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q355_9PHAE) HSP 1 Score: 206 bits (523), Expect = 2.640e-66 Identity = 96/132 (72.73%), Postives = 119/132 (90.15%), Query Frame = 1
Query: 1 MTTDNIADMLTRIRNANLVRHQIVQVLKTKMTLSVSKILKEEGYITDFEEFEDKNKNYLLLCLKYHGQNRQPIISAIKRISKPGLRIYVDKKNLPNVLSNLGIAIISTSKGVMTNHKARELGVGGEVICYIW 396
MTTD IADMLTRIRNANLVRH++VQV+KT +T+SV++ILKEEGYI D+EE E K+YLLL LKY+ Q RQPII+ +KR+SKPGLRIYV+K NLP V++NLGIAI+STSKG++TN+KA++LGVGGEV+CYIW
Sbjct: 1 MTTDIIADMLTRIRNANLVRHRLVQVIKTNLTISVTQILKEEGYIADYEEIELSKKSYLLLSLKYYNQKRQPIITGLKRVSKPGLRIYVNKNNLPIVINNLGIAILSTSKGILTNNKAKKLGVGGEVLCYIW 132
BLAST of mRNA_S-ischiensis_contig110.2407.1 vs. uniprot
Match: B7T1X1_VAULI (30S ribosomal protein S8, chloroplastic n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T1X1_VAULI) HSP 1 Score: 206 bits (523), Expect = 2.640e-66 Identity = 94/132 (71.21%), Postives = 116/132 (87.88%), Query Frame = 1
Query: 1 MTTDNIADMLTRIRNANLVRHQIVQVLKTKMTLSVSKILKEEGYITDFEEFEDKNKNYLLLCLKYHGQNRQPIISAIKRISKPGLRIYVDKKNLPNVLSNLGIAIISTSKGVMTNHKARELGVGGEVICYIW 396
M D+I+DMLTR+RNAN+VRHQIV++ KTKMTL+++KILKEEGYI FEEFE+ +N+LLLCLKY+G R+PI++ + RISKPGLRIYV+ KN+P VL NLGIAIISTSKGV+TNH A+ LG+GGEVICYIW
Sbjct: 1 MIKDDISDMLTRLRNANMVRHQIVEIPKTKMTLAIAKILKEEGYILKFEEFEENKRNFLLLCLKYNGSKRKPILTTVVRISKPGLRIYVNHKNIPQVLGNLGIAIISTSKGVITNHTAKNLGIGGEVICYIW 132
BLAST of mRNA_S-ischiensis_contig110.2407.1 vs. uniprot
Match: UPI001EDD1FDE (ribosomal protein S8 n=1 Tax=Thalassionema frauenfeldii TaxID=186022 RepID=UPI001EDD1FDE) HSP 1 Score: 202 bits (513), Expect = 8.840e-65 Identity = 91/132 (68.94%), Postives = 116/132 (87.88%), Query Frame = 1
Query: 1 MTTDNIADMLTRIRNANLVRHQIVQVLKTKMTLSVSKILKEEGYITDFEEFEDKNKNYLLLCLKYHGQNRQPIISAIKRISKPGLRIYVDKKNLPNVLSNLGIAIISTSKGVMTNHKARELGVGGEVICYIW 396
M TDNI+D+LTRIRNAN+V+H +VQV TKM+L++ KILK+EGYI +FE++ + NK YLL+ LKY G+NRQP+IS ++R+SKPGLR+Y +KK LPN+L NLGIAIISTSKGVMTN KA+ELG+GGEV+CYIW
Sbjct: 1 MVTDNISDLLTRIRNANMVKHHVVQVPHTKMSLAIVKILKDEGYIENFEDYAENNKKYLLILLKYFGRNRQPVISKLQRVSKPGLRVYKNKKTLPNILDNLGIAIISTSKGVMTNIKAKELGIGGEVLCYIW 132
BLAST of mRNA_S-ischiensis_contig110.2407.1 vs. uniprot
Match: A0A8E6D514_9PHAE (30S ribosomal protein S8, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D514_9PHAE) HSP 1 Score: 200 bits (509), Expect = 3.060e-64 Identity = 94/127 (74.02%), Postives = 110/127 (86.61%), Query Frame = 1
Query: 16 IADMLTRIRNANLVRHQIVQVLKTKMTLSVSKILKEEGYITDFEEFEDKNKNYLLLCLKYHGQNRQPIISAIKRISKPGLRIYVDKKNLPNVLSNLGIAIISTSKGVMTNHKARELGVGGEVICYIW 396
+ADMLTRIRNANLVRH+IVQ+ TKMTL+++KILKEEGYI+ FEE E N+ YLLLCLKY+G NR P I IKRISKPGLRIYV NLP VLSNLGIAI+STSKG++TN+ A++LG+GGEVICYIW
Sbjct: 1 MADMLTRIRNANLVRHRIVQITNTKMTLAIAKILKEEGYISSFEEIELSNRKYLLLCLKYYGYNRSPTIKGIKRISKPGLRIYVSGDNLPKVLSNLGIAILSTSKGILTNYSAKKLGIGGEVICYIW 127
BLAST of mRNA_S-ischiensis_contig110.2407.1 vs. uniprot
Match: A0A2U9NNP8_9STRA (30S ribosomal protein S8, chloroplastic n=1 Tax=Licmophora sp. TaxID=2115823 RepID=A0A2U9NNP8_9STRA) HSP 1 Score: 197 bits (500), Expect = 8.460e-63 Identity = 88/132 (66.67%), Postives = 116/132 (87.88%), Query Frame = 1
Query: 1 MTTDNIADMLTRIRNANLVRHQIVQVLKTKMTLSVSKILKEEGYITDFEEFEDKNKNYLLLCLKYHGQNRQPIISAIKRISKPGLRIYVDKKNLPNVLSNLGIAIISTSKGVMTNHKARELGVGGEVICYIW 396
M TD I+D+LTRIRNAN+V+HQIVQ+ +KM++S++ ILK+EG+I +FE + +KNKNYLL+ LKY+G+ R+P+I+ +KRISKPGLR+Y + KNLP VL NLGIAIISTS+GVMTN KARELG+GGE++CYIW
Sbjct: 1 MVTDTISDILTRIRNANMVKHQIVQIPTSKMSVSITNILKDEGFIDNFENYTEKNKNYLLISLKYNGKGREPVITKLKRISKPGLRVYANSKNLPIVLDNLGIAIISTSRGVMTNMKARELGIGGEILCYIW 132 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig110.2407.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig110.2407.1 >prot_S-ischiensis_contig110.2407.1 ID=prot_S-ischiensis_contig110.2407.1|Name=mRNA_S-ischiensis_contig110.2407.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=133bp MTTDNIADMLTRIRNANLVRHQIVQVLKTKMTLSVSKILKEEGYITDFEEback to top mRNA from alignment at S-ischiensis_contig110:72542..72940+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig110.2407.1 ID=mRNA_S-ischiensis_contig110.2407.1|Name=mRNA_S-ischiensis_contig110.2407.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=399bp|location=Sequence derived from alignment at S-ischiensis_contig110:72542..72940+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig110:72542..72940+ >mRNA_S-ischiensis_contig110.2407.1 ID=mRNA_S-ischiensis_contig110.2407.1|Name=mRNA_S-ischiensis_contig110.2407.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=798bp|location=Sequence derived from alignment at S-ischiensis_contig110:72542..72940+ (Schizocladia ischiensis KU_0333)back to top |