mRNA_S-ischiensis_contig110.2406.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig110.2406.1
Unique NamemRNA_S-ischiensis_contig110.2406.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig110.2406.1 vs. uniprot
Match: A0A7S6U9X8_9STRA (50S ribosomal protein L2, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9X8_9STRA)

HSP 1 Score: 555 bits (1430), Expect = 7.340e-200
Identity = 275/275 (100.00%), Postives = 275/275 (100.00%), Query Frame = 1
Query:    1 MAIRICKVYTPGTRNTILSSFNDITKNYPEKRLTTKNHRKKGRNNQGIITTRHRGGGHKRKYRTIDFKRNKYNIPGKVAAIEYDPNRSSLIALIYYSDGEKRYIICPDSLKRGDIILSGTNVPISIGNALPLENIPLGTYIHNIEISYQKGGQIVRAAGTYARILAKEGNYVTVKLPSKEIRVINKTNYATIGVVSNKDFYSIRLGKAGRKRWLGFRPTVRGSVMNPCDHPHGGGEGRAPIGRTKPYTPWGKITLGKKTRKKYKYSDGYIVRSRA 825
            MAIRICKVYTPGTRNTILSSFNDITKNYPEKRLTTKNHRKKGRNNQGIITTRHRGGGHKRKYRTIDFKRNKYNIPGKVAAIEYDPNRSSLIALIYYSDGEKRYIICPDSLKRGDIILSGTNVPISIGNALPLENIPLGTYIHNIEISYQKGGQIVRAAGTYARILAKEGNYVTVKLPSKEIRVINKTNYATIGVVSNKDFYSIRLGKAGRKRWLGFRPTVRGSVMNPCDHPHGGGEGRAPIGRTKPYTPWGKITLGKKTRKKYKYSDGYIVRSRA
Sbjct:    1 MAIRICKVYTPGTRNTILSSFNDITKNYPEKRLTTKNHRKKGRNNQGIITTRHRGGGHKRKYRTIDFKRNKYNIPGKVAAIEYDPNRSSLIALIYYSDGEKRYIICPDSLKRGDIILSGTNVPISIGNALPLENIPLGTYIHNIEISYQKGGQIVRAAGTYARILAKEGNYVTVKLPSKEIRVINKTNYATIGVVSNKDFYSIRLGKAGRKRWLGFRPTVRGSVMNPCDHPHGGGEGRAPIGRTKPYTPWGKITLGKKTRKKYKYSDGYIVRSRA 275          
BLAST of mRNA_S-ischiensis_contig110.2406.1 vs. uniprot
Match: A0A8F0JXT5_9PHAE (Ribosomal protein L2 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JXT5_9PHAE)

HSP 1 Score: 434 bits (1116), Expect = 5.190e-152
Identity = 212/274 (77.37%), Postives = 241/274 (87.96%), Query Frame = 1
Query:    1 MAIRICKVYTPGTRNTILSSFNDITKNYPEKRLTTKNHRKKGRNNQGIITTRHRGGGHKRKYRTIDFKRNKYNIPGKVAAIEYDPNRSSLIALIYYSDGEKRYIICPDSLKRGDIILSGTNVPISIGNALPLENIPLGTYIHNIEISYQKGGQIVRAAGTYARILAKEGNYVTVKLPSKEIRVINKTNYATIGVVSNKDFYSIRLGKAGRKRWLGFRPTVRGSVMNPCDHPHGGGEGRAPIGRTKPYTPWGKITLGKKTRKKYKYSDGYIVRSR 822
            MAIRICKVYT GTRNT+ SSF+DITKN PEK+L  +NHRKKGRNNQG+ITTRH GGGHKR+YR IDFKR K+NI G V AIEYDPNR+S IALI+Y++GEK YI+CPDSLK G+ I+SG  VP+ IGNALPLENIPLGT +HNIE+SY KGGQ+VRAAGT+AR+LAKE NYVT++LPSKEIR+I+K+ YATIG+VSN+D  +I+LGKAGRKRWLG RPTVRGSVMNPCDHPHGGGEGRA IGR K YTPWGK  LG KTRKK KYSD YIVRSR
Sbjct:    1 MAIRICKVYTVGTRNTVFSSFSDITKNKPEKQLIRRNHRKKGRNNQGLITTRHXGGGHKRQYRQIDFKRKKHNIIGHVVAIEYDPNRNSRIALIHYANGEKNYILCPDSLKIGNTIVSGPTVPLEIGNALPLENIPLGTSVHNIELSYNKGGQVVRAAGTFARVLAKENNYVTLRLPSKEIRLIHKSCYATIGIVSNRDHNNIKLGKAGRKRWLGIRPTVRGSVMNPCDHPHGGGEGRAKIGRPKAYTPWGKAALGVKTRKKSKYSDIYIVRSR 274          
BLAST of mRNA_S-ischiensis_contig110.2406.1 vs. uniprot
Match: D1J749_ECTSI (50S ribosomal protein L2, chloroplastic n=39 Tax=Phaeophyceae TaxID=2870 RepID=D1J749_ECTSI)

HSP 1 Score: 428 bits (1101), Expect = 9.980e-150
Identity = 214/275 (77.82%), Postives = 237/275 (86.18%), Query Frame = 1
Query:    1 MAIRICKVYTPGTRNTILSSFNDITKNYPEKRLTTKNHRKKGRNNQGIITTRHRGGGHKRKYRTIDFKRNKYNIPGKVAAIEYDPNRSSLIALIYYSDGEKRYIICPDSLKRGDIILSGTNVPISIGNALPLENIPLGTYIHNIEISYQKGGQIVRAAGTYARILAKEGNYVTVKLPSKEIRVINKTNYATIGVVSNKDFYSIRLGKAGRKRWLGFRPTVRGSVMNPCDHPHGGGEGRAPIGRTKPYTPWGKITLGKKTRKKYKYSDGYIVRSRA 825
            MAIRICKVYT GTRNT+ SSF++ITK  PEK+L  KNHRKKGRNNQG+ITTRH GGGHKR+YR IDFKR K+NI G V AIEYDPNR++ IALI+Y +G+K YIICPDSLK G  I+SG +VPI IGNALPLE IPLGT IHNIE+SY KGGQIVRAAGT ARILAKE +YVTV+LPSKEIR+I+K  YATIG+VSNKD  +I+LGKAGRKRWLG RPTVRGSVMNPCDHPHGGGEGRA IGR K YTPWGK  LG KTRKK KYSD YIVRSR+
Sbjct:    1 MAIRICKVYTVGTRNTVFSSFDEITKTKPEKKLIGKNHRKKGRNNQGLITTRHHGGGHKRRYRMIDFKRKKHNIIGSVFAIEYDPNRNARIALIHYENGDKNYIICPDSLKIGSKIISGPSVPIEIGNALPLEKIPLGTAIHNIELSYNKGGQIVRAAGTSARILAKESDYVTVRLPSKEIRIIHKNCYATIGIVSNKDHNNIKLGKAGRKRWLGIRPTVRGSVMNPCDHPHGGGEGRATIGRPKAYTPWGKAALGVKTRKKEKYSDIYIVRSRS 275          
BLAST of mRNA_S-ischiensis_contig110.2406.1 vs. uniprot
Match: A0A141BSN8_9PHAE (50S ribosomal protein L2, chloroplastic n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSN8_9PHAE)

HSP 1 Score: 421 bits (1081), Expect = 1.110e-146
Identity = 210/274 (76.64%), Postives = 235/274 (85.77%), Query Frame = 1
Query:    1 MAIRICKVYTPGTRNTILSSFNDITKNYPEKRLTTKNHRKKGRNNQGIITTRHRGGGHKRKYRTIDFKRNKYNIPGKVAAIEYDPNRSSLIALIYYSDGEKRYIICPDSLKRGDIILSGTNVPISIGNALPLENIPLGTYIHNIEISYQKGGQIVRAAGTYARILAKEGNYVTVKLPSKEIRVINKTNYATIGVVSNKDFYSIRLGKAGRKRWLGFRPTVRGSVMNPCDHPHGGGEGRAPIGRTKPYTPWGKITLGKKTRKKYKYSDGYIVRSR 822
            M IRICKVYT GTRNTI  +F+DITK+ PE+ L  KNHRKKGRNN+GIIT RH GGGHKR+YRTIDFKR K+N  G V +IEYDPNR++ IAL++Y +GEK YIICPDSLK G+ ILSG + PI IGNALPLENIPLGT +HNIE+S+ KGGQIVRAAGT ARILAKE NYVT++LPSKEIR+I+K+ YATIG VSNKD  +I+LGKAGRKRWLG RPTVRGSVMNPCDHPHGGGEGRA IGR K YTPWGK TLG KTRKK KYSD YIVRSR
Sbjct:    1 MTIRICKVYTIGTRNTIFPAFDDITKSQPERNLIAKNHRKKGRNNKGIITIRHHGGGHKRRYRTIDFKRRKHNRVGYVYSIEYDPNRNARIALVHYDNGEKNYIICPDSLKIGNKILSGPDAPIEIGNALPLENIPLGTSVHNIELSFNKGGQIVRAAGTAARILAKENNYVTLRLPSKEIRLIHKSCYATIGTVSNKDHNNIKLGKAGRKRWLGVRPTVRGSVMNPCDHPHGGGEGRATIGRPKAYTPWGKSTLGVKTRKKAKYSDIYIVRSR 274          
BLAST of mRNA_S-ischiensis_contig110.2406.1 vs. uniprot
Match: A0A2I4Q342_9PHAE (50S ribosomal protein L2, chloroplastic n=2 Tax=Eukaryota TaxID=2759 RepID=A0A2I4Q342_9PHAE)

HSP 1 Score: 412 bits (1059), Expect = 2.480e-143
Identity = 203/274 (74.09%), Postives = 234/274 (85.40%), Query Frame = 1
Query:    1 MAIRICKVYTPGTRNTILSSFNDITKNYPEKRLTTKNHRKKGRNNQGIITTRHRGGGHKRKYRTIDFKRNKYNIPGKVAAIEYDPNRSSLIALIYYSDGEKRYIICPDSLKRGDIILSGTNVPISIGNALPLENIPLGTYIHNIEISYQKGGQIVRAAGTYARILAKEGNYVTVKLPSKEIRVINKTNYATIGVVSNKDFYSIRLGKAGRKRWLGFRPTVRGSVMNPCDHPHGGGEGRAPIGRTKPYTPWGKITLGKKTRKKYKYSDGYIVRSR 822
            MAIR CKVYTPGTRNTILSSF +ITK   EK+LT KNHRKKGRNNQG+IT+RH GGGHK+ YR IDFKR K+NI G VA+IEYDPNR++ IALI Y DG+K YIICP+ ++ G  I+SG   P+ IGNALPL+ IPLGT +HNIE+SY KGGQIVRAAGT+ARILAKE +YVT++LPSKEIR++++T YATIG+VSN+D  +IRLGKAGRKRWLG RPTVRGSVMNPCDHPHGGGEGRA IGR K YTPWGK  LG KTRKK +YSD +IVRSR
Sbjct:    1 MAIRFCKVYTPGTRNTILSSFKEITKPSSEKKLTKKNHRKKGRNNQGLITSRHHGGGHKKLYRLIDFKRRKHNIVGFVASIEYDPNRNARIALINYRDGQKSYIICPEEVRIGSRIMSGPTAPLEIGNALPLDKIPLGTSVHNIELSYNKGGQIVRAAGTFARILAKENDYVTLRLPSKEIRLVHRTCYATIGIVSNRDNNNIRLGKAGRKRWLGVRPTVRGSVMNPCDHPHGGGEGRATIGRPKAYTPWGKPALGVKTRKKERYSDIFIVRSR 274          
BLAST of mRNA_S-ischiensis_contig110.2406.1 vs. uniprot
Match: D1GJS9_FUCVE (50S ribosomal protein L2, chloroplastic n=3 Tax=Fucaceae TaxID=3010 RepID=D1GJS9_FUCVE)

HSP 1 Score: 400 bits (1029), Expect = 9.120e-139
Identity = 203/274 (74.09%), Postives = 226/274 (82.48%), Query Frame = 1
Query:    1 MAIRICKVYTPGTRNTILSSFNDITKNYPEKRLTTKNHRKKGRNNQGIITTRHRGGGHKRKYRTIDFKRNKYNIPGKVAAIEYDPNRSSLIALIYYSDGEKRYIICPDSLKRGDIILSGTNVPISIGNALPLENIPLGTYIHNIEISYQKGGQIVRAAGTYARILAKEGNYVTVKLPSKEIRVINKTNYATIGVVSNKDFYSIRLGKAGRKRWLGFRPTVRGSVMNPCDHPHGGGEGRAPIGRTKPYTPWGKITLGKKTRKKYKYSDGYIVRSR 822
            MAIRICKVYT GT NTI SSFN+ITK+ PEK+L +KNHRKKGRN             HKR+YR IDFKR K+NI G V +IEYDPNR++ IALIYY +G+K YIICPDSLK G+ ILSG N P+ IGNALPLENIPLGT +HNIE+SY KGGQIVRAAGT ARILAKE NYVTV+LPSKEIR+I+K+ YATIG+VSN+D  +I+LGKAGRKRWLG RPTVRGSVMNPCDHPHGGGEG A IGR K YTPWGK  LG KTRKK KYSD YIVRSR
Sbjct:    1 MAIRICKVYTVGTXNTIFSSFNEITKSKPEKKLISKNHRKKGRNXXXXXXXXXXXXXHKRRYRMIDFKRKKHNIVGYVHSIEYDPNRTTRIALIYYENGDKNYIICPDSLKIGNRILSGPNAPLDIGNALPLENIPLGTSVHNIELSYNKGGQIVRAAGTSARILAKENNYVTVRLPSKEIRLIHKSCYATIGIVSNRDHNNIKLGKAGRKRWLGIRPTVRGSVMNPCDHPHGGGEGHATIGRPKAYTPWGKPALGVKTRKKEKYSDIYIVRSR 274          
BLAST of mRNA_S-ischiensis_contig110.2406.1 vs. uniprot
Match: B7T1Y1_VAULI (50S ribosomal protein L2, chloroplastic n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T1Y1_VAULI)

HSP 1 Score: 397 bits (1021), Expect = 1.500e-137
Identity = 194/274 (70.80%), Postives = 226/274 (82.48%), Query Frame = 1
Query:    1 MAIRICKVYTPGTRNTILSSFNDITKNYPEKRLTTKNHRKKGRNNQGIITTRHRGGGHKRKYRTIDFKRNKYNIPGKVAAIEYDPNRSSLIALIYYSDGEKRYIICPDSLKRGDIILSGTNVPISIGNALPLENIPLGTYIHNIEISYQKGGQIVRAAGTYARILAKEGNYVTVKLPSKEIRVINKTNYATIGVVSNKDFYSIRLGKAGRKRWLGFRPTVRGSVMNPCDHPHGGGEGRAPIGRTKPYTPWGKITLGKKTRKKYKYSDGYIVRSR 822
            M I++CK  TPGTRN++L  F++ITKN PEK L  K HRKKGRNN G IT RHRGGGHKR YRTIDFKRNK NI GK+ +IEYDPNR++ IAL++Y DGEKRYI+CPD L  G  I SG N+   IGN+LPL  IPLGT+IHNIE+S  KGGQIVRAAG++ARILAK+  Y+T++LPSKEIR+I  + YATIG++SN+D  ++ LGKAGRKRWLG RPTVRGSVMNPCDHPHGGGEGRAPIGR KPYTPWGK  LG KTRKK KYSD +I+RSR
Sbjct:    1 MLIQVCKANTPGTRNSVLLKFDEITKNKPEKTLIKKLHRKKGRNNNGRITIRHRGGGHKRLYRTIDFKRNKLNIKGKIHSIEYDPNRNTKIALVHYEDGEKRYILCPDKLIVGSYIESGENIKSQIGNSLPLAYIPLGTFIHNIELSPNKGGQIVRAAGSFARILAKDDKYITLRLPSKEIRLIQSSCYATIGIISNRDAANVVLGKAGRKRWLGIRPTVRGSVMNPCDHPHGGGEGRAPIGRVKPYTPWGKSALGTKTRKKNKYSDIFILRSR 274          
BLAST of mRNA_S-ischiensis_contig110.2406.1 vs. uniprot
Match: A0A8E5XRP5_9PHAE (50S ribosomal protein L2, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRP5_9PHAE)

HSP 1 Score: 395 bits (1015), Expect = 1.280e-136
Identity = 198/274 (72.26%), Postives = 222/274 (81.02%), Query Frame = 1
Query:    1 MAIRICKVYTPGTRNTILSSFNDITKNYPEKRLTTKNHRKKGRNNQGIITTRHRGGGHKRKYRTIDFKRNKYNIPGKVAAIEYDPNRSSLIALIYYSDGEKRYIICPDSLKRGDIILSGTNVPISIGNALPLENIPLGTYIHNIEISYQKGGQIVRAAGTYARILAKEGNYVTVKLPSKEIRVINKTNYATIGVVSNKDFYSIRLGKAGRKRWLGFRPTVRGSVMNPCDHPHGGGEGRAPIGRTKPYTPWGKITLGKKTRKKYKYSDGYIVRSR 822
            M IRICKV T GTRN I+SSF D+TK  PEKRL   NHRKKGRNNQG+IT RH GGGHKRKYRTIDFKR K NI GKV AIEYDPNR++ IALI+Y DGEK YIICPD L+ G+++ +G +  + +GNALPLENI LGT++HNIE+   KGGQIVRAAGT ARILA+EGNYVT++LPSKEIR INK  YATIG+V NKD +  RLGKAG  RW G RPTVRGSVMNPCDHPHGGGEGRA IGR K YT WGK  LG KTRK+ KYS+ YIVR R
Sbjct:    1 MTIRICKVSTAGTRNKIISSFKDLTKKKPEKRLIKVNHRKKGRNNQGLITVRHHGGGHKRKYRTIDFKRRKRNILGKVVAIEYDPNRNARIALIHYLDGEKSYIICPDKLRIGEMVSAGPHAALKVGNALPLENILLGTFVHNIELFPNKGGQIVRAAGTSARILAREGNYVTLRLPSKEIRAINKCCYATIGIVGNKDSFLTRLGKAGATRWRGIRPTVRGSVMNPCDHPHGGGEGRARIGRPKAYTRWGKPALGVKTRKREKYSNPYIVRRR 274          
BLAST of mRNA_S-ischiensis_contig110.2406.1 vs. uniprot
Match: A0A023HA97_9STRA (50S ribosomal protein L2, chloroplastic n=1 Tax=Coscinodiscus radiatus TaxID=33642 RepID=A0A023HA97_9STRA)

HSP 1 Score: 392 bits (1006), Expect = 2.890e-135
Identity = 194/272 (71.32%), Postives = 224/272 (82.35%), Query Frame = 1
Query:    1 MAIRICKVYTPGTRNTILSSFNDITKNYPEKRLTTKNHRKKGRNNQGIITTRHRGGGHKRKYRTIDFKRNKYNIPGKVAAIEYDPNRSSLIALIYYSDGEKRYIICPDSLKRGDIILSGTNVPISIGNALPLENIPLGTYIHNIEISYQKGGQIVRAAGTYARILAKEGNYVTVKLPSKEIRVINKTNYATIGVVSNKDFYSIRLGKAGRKRWLGFRPTVRGSVMNPCDHPHGGGEGRAPIGRTKPYTPWGKITLGKKTRKKYKYSDGYIVR 816
            M+IR+ K YTPGTRN  LSSFNDITKN PEK+LT KNHR KGRNN+GIIT RHRGGGHK+KYR IDF RNKYNI  +VAAIEYDPNR++ IAL+YY DGEKRYI+ P++L+ GD I S  +  ISIGN LPL NIPLGT +HN+E+    GGQIVRAAGT A++LAKEGNYVT++LPSKEIR+I K  +ATIG +SN D + +R GKAGR RWLG RPTVRGSVMNPCDHPHGGGEGRAPIGRT+P TPWGK  LG KTRK  + S+ YI+R
Sbjct:    1 MSIRLYKAYTPGTRNRALSSFNDITKNKPEKKLTCKNHRVKGRNNRGIITIRHRGGGHKKKYRIIDFHRNKYNIEARVAAIEYDPNRNARIALVYYKDGEKRYILHPNNLQVGDTIKSSEDAAISIGNTLPLNNIPLGTTVHNVELIPYHGGQIVRAAGTSAKVLAKEGNYVTLRLPSKEIRLIRKECFATIGEISNNDAFLVRSGKAGRTRWLGKRPTVRGSVMNPCDHPHGGGEGRAPIGRTRPLTPWGKPALGIKTRKNKRISNLYILR 272          
BLAST of mRNA_S-ischiensis_contig110.2406.1 vs. uniprot
Match: UPI001EDDD5E0 (ribosomal protein L2 n=3 Tax=Thalassionema TaxID=33648 RepID=UPI001EDDD5E0)

HSP 1 Score: 390 bits (1002), Expect = 1.170e-134
Identity = 192/274 (70.07%), Postives = 225/274 (82.12%), Query Frame = 1
Query:    1 MAIRICKVYTPGTRNTILSSFNDITKNYPEKRLTTKNHRKKGRNNQGIITTRHRGGGHKRKYRTIDFKRNKYNIPGKVAAIEYDPNRSSLIALIYYSDGEKRYIICPDSLKRGDIILSGTNVPISIGNALPLENIPLGTYIHNIEISYQKGGQIVRAAGTYARILAKEGNYVTVKLPSKEIRVINKTNYATIGVVSNKDFYSIRLGKAGRKRWLGFRPTVRGSVMNPCDHPHGGGEGRAPIGRTKPYTPWGKITLGKKTRKKYKYSDGYIVRSR 822
            MAIR+ K YTPGTRN ILS F++ITK+ PEK L  K HR KGRNN+G+IT RHRGGGHKR+YR IDFKRNK  I G+VAAIEYDPNR++ IALI YSDGEKRYI+ P +L+ G+ I SG+N+P++IGN++PL+ IPLGT +HNIE    KGGQIVRA GT A+ILAKEGNYVT++LPSKEIR++ K  YATIG +SN D + I+ GKAGR RWLG RPTVRGSVMNPCDHPHGGGEGRAP+GRT+P TPWGK  LG KTRK  K SD YI+R R
Sbjct:    1 MAIRLYKAYTPGTRNRILSDFSEITKSKPEKSLLRKKHRNKGRNNRGVITIRHRGGGHKRRYRLIDFKRNKIEIEGRVAAIEYDPNRNARIALINYSDGEKRYILHPKNLQIGNSIYSGSNIPLNIGNSMPLDEIPLGTSVHNIEFIPNKGGQIVRAGGTSAKILAKEGNYVTLRLPSKEIRLLRKECYATIGEISNNDIFLIQSGKAGRTRWLGKRPTVRGSVMNPCDHPHGGGEGRAPVGRTRPLTPWGKPALGLKTRKNKKLSDAYILRRR 274          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig110.2406.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S6U9X8_9STRA7.340e-200100.0050S ribosomal protein L2, chloroplastic n=1 Tax=Sc... [more]
A0A8F0JXT5_9PHAE5.190e-15277.37Ribosomal protein L2 n=1 Tax=Protohalopteris sp. T... [more]
D1J749_ECTSI9.980e-15077.8250S ribosomal protein L2, chloroplastic n=39 Tax=P... [more]
A0A141BSN8_9PHAE1.110e-14676.6450S ribosomal protein L2, chloroplastic n=13 Tax=S... [more]
A0A2I4Q342_9PHAE2.480e-14374.0950S ribosomal protein L2, chloroplastic n=2 Tax=Eu... [more]
D1GJS9_FUCVE9.120e-13974.0950S ribosomal protein L2, chloroplastic n=3 Tax=Fu... [more]
B7T1Y1_VAULI1.500e-13770.8050S ribosomal protein L2, chloroplastic n=1 Tax=Va... [more]
A0A8E5XRP5_9PHAE1.280e-13672.2650S ribosomal protein L2, chloroplastic n=1 Tax=Is... [more]
A0A023HA97_9STRA2.890e-13571.3250S ribosomal protein L2, chloroplastic n=1 Tax=Co... [more]
UPI001EDDD5E01.170e-13470.07ribosomal protein L2 n=3 Tax=Thalassionema TaxID=3... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig110contigS-ischiensis_contig110:67750..68577 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score434.5
Seed ortholog evalue3.7e-119
Seed eggNOG ortholog2880.D1J749
Preferred namerpl2
KEGG koko:K02886,ko:K02965
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
GOsGO:0000027,GO:0000313,GO:0000315,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005762,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0031967,GO:0031974,GO:0031975,GO:0032543,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046872,GO:0046914,GO:0065003,GO:0070013,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:0098798,GO:0140053,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0090@1,KOG0438@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryother localisation
Exons1
Model size828
Cds size828
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815621.3357074-CDS-S-ischiensis_contig110:67749..685771622815621.3357074-CDS-S-ischiensis_contig110:67749..68577Schizocladia ischiensis KU_0333CDSS-ischiensis_contig110 67750..68577 +
1695739809.5793252-CDS-S-ischiensis_contig110:67749..685771695739809.5793252-CDS-S-ischiensis_contig110:67749..68577Schizocladia ischiensis KU_0333CDSS-ischiensis_contig110 67750..68577 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig110.2406.1prot_S-ischiensis_contig110.2406.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig110 67750..68577 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig110.2406.1

>prot_S-ischiensis_contig110.2406.1 ID=prot_S-ischiensis_contig110.2406.1|Name=mRNA_S-ischiensis_contig110.2406.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=276bp
MAIRICKVYTPGTRNTILSSFNDITKNYPEKRLTTKNHRKKGRNNQGIIT
TRHRGGGHKRKYRTIDFKRNKYNIPGKVAAIEYDPNRSSLIALIYYSDGE
KRYIICPDSLKRGDIILSGTNVPISIGNALPLENIPLGTYIHNIEISYQK
GGQIVRAAGTYARILAKEGNYVTVKLPSKEIRVINKTNYATIGVVSNKDF
YSIRLGKAGRKRWLGFRPTVRGSVMNPCDHPHGGGEGRAPIGRTKPYTPW
GKITLGKKTRKKYKYSDGYIVRSRA*
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mRNA from alignment at S-ischiensis_contig110:67750..68577+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig110.2406.1 ID=mRNA_S-ischiensis_contig110.2406.1|Name=mRNA_S-ischiensis_contig110.2406.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=828bp|location=Sequence derived from alignment at S-ischiensis_contig110:67750..68577+ (Schizocladia ischiensis KU_0333)
ATGGCTATTCGTATTTGTAAAGTTTACACACCAGGAACAAGAAATACAAT ATTATCAAGTTTTAATGACATTACAAAAAATTATCCTGAAAAAAGATTAA CTACAAAAAATCATCGAAAGAAAGGTAGAAATAATCAAGGAATTATTACG ACAAGACATCGTGGTGGCGGACATAAAAGAAAATATAGAACAATTGATTT TAAACGTAATAAATATAATATACCAGGAAAAGTTGCAGCCATTGAATATG ATCCAAACCGTAGTTCATTAATTGCTTTGATCTATTATAGTGATGGAGAA AAACGTTATATAATTTGTCCAGATTCTTTAAAAAGAGGAGATATTATTCT ATCAGGAACTAATGTTCCTATCAGTATTGGCAATGCATTACCTTTAGAAA ATATTCCTCTCGGTACATATATTCATAATATTGAAATTTCATATCAAAAA GGTGGTCAAATAGTTCGGGCCGCAGGTACCTACGCAAGGATTTTAGCGAA AGAAGGAAATTATGTGACAGTAAAATTGCCTTCAAAAGAAATACGAGTAA TTAATAAAACCAATTATGCAACTATTGGAGTTGTTAGTAATAAAGATTTT TATAGTATTAGATTAGGAAAAGCTGGACGTAAACGTTGGTTAGGTTTTCG ACCTACAGTACGTGGTTCAGTTATGAATCCATGTGACCATCCACATGGAG GGGGTGAAGGTCGTGCCCCTATTGGACGAACAAAACCTTATACACCTTGG GGAAAAATAACGTTAGGTAAAAAAACACGTAAAAAGTACAAATATAGTGA TGGCTATATTGTTCGCTCTAGAGCTTAA
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Coding sequence (CDS) from alignment at S-ischiensis_contig110:67750..68577+

>mRNA_S-ischiensis_contig110.2406.1 ID=mRNA_S-ischiensis_contig110.2406.1|Name=mRNA_S-ischiensis_contig110.2406.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1656bp|location=Sequence derived from alignment at S-ischiensis_contig110:67750..68577+ (Schizocladia ischiensis KU_0333)
ATGGCTATTCGTATTTGTAAAGTTTACACACCAGGAACAAGAAATACAAT
ATTATCAAGTTTTAATGACATTACAAAAAATTATCCTGAAAAAAGATTAA
CTACAAAAAATCATCGAAAGAAAGGTAGAAATAATCAAGGAATTATTACG
ACAAGACATCGTGGTGGCGGACATAAAAGAAAATATAGAACAATTGATTT
TAAACGTAATAAATATAATATACCAGGAAAAGTTGCAGCCATTGAATATG
ATCCAAACCGTAGTTCATTAATTGCTTTGATCTATTATAGTGATGGAGAA
AAACGTTATATAATTTGTCCAGATTCTTTAAAAAGAGGAGATATTATTCT
ATCAGGAACTAATGTTCCTATCAGTATTGGCAATGCATTACCTTTAGAAA
ATATTCCTCTCGGTACATATATTCATAATATTGAAATTTCATATCAAAAA
GGTGGTCAAATAGTTCGGGCCGCAGGTACCTACGCAAGGATTTTAGCGAA
AGAAGGAAATTATGTGACAGTAAAATTGCCTTCAAAAGAAATACGAGTAA
TTAATAAAACCAATTATGCAACTATTGGAGTTGTTAGTAATAAAGATTTT
TATAGTATTAGATTAGGAAAAGCTGGACGTAAACGTTGGTTAGGTTTTCG
ACCTACAGTACGTGGTTCAGTTATGAATCCATGTGACCATCCACATGGAG
GGGGTGAAGGTCGTGCCCCTATTGGACGAACAAAACCTTATACACCTTGG
GGAAAAATAACGTTAGGTAAAAAAACACGTAAAAAGTACAAATATAGTGA
TGGCTATATTGTTCGCTCTAGAGCTTAAATGGCTATTCGTATTTGTAAAG
TTTACACACCAGGAACAAGAAATACAATATTATCAAGTTTTAATGACATT
ACAAAAAATTATCCTGAAAAAAGATTAACTACAAAAAATCATCGAAAGAA
AGGTAGAAATAATCAAGGAATTATTACGACAAGACATCGTGGTGGCGGAC
ATAAAAGAAAATATAGAACAATTGATTTTAAACGTAATAAATATAATATA
CCAGGAAAAGTTGCAGCCATTGAATATGATCCAAACCGTAGTTCATTAAT
TGCTTTGATCTATTATAGTGATGGAGAAAAACGTTATATAATTTGTCCAG
ATTCTTTAAAAAGAGGAGATATTATTCTATCAGGAACTAATGTTCCTATC
AGTATTGGCAATGCATTACCTTTAGAAAATATTCCTCTCGGTACATATAT
TCATAATATTGAAATTTCATATCAAAAAGGTGGTCAAATAGTTCGGGCCG
CAGGTACCTACGCAAGGATTTTAGCGAAAGAAGGAAATTATGTGACAGTA
AAATTGCCTTCAAAAGAAATACGAGTAATTAATAAAACCAATTATGCAAC
TATTGGAGTTGTTAGTAATAAAGATTTTTATAGTATTAGATTAGGAAAAG
CTGGACGTAAACGTTGGTTAGGTTTTCGACCTACAGTACGTGGTTCAGTT
ATGAATCCATGTGACCATCCACATGGAGGGGGTGAAGGTCGTGCCCCTAT
TGGACGAACAAAACCTTATACACCTTGGGGAAAAATAACGTTAGGTAAAA
AAACACGTAAAAAGTACAAATATAGTGATGGCTATATTGTTCGCTCTAGA
GCTTAA
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