mRNA_S-ischiensis_contig11.2391.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2391.1
Unique NamemRNA_S-ischiensis_contig11.2391.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig11.2391.1 vs. uniprot
Match: A0A6H5KCW0_9PHAE (PX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCW0_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 2.900e-17
Identity = 50/87 (57.47%), Postives = 65/87 (74.71%), Query Frame = 1 
Query:  121 TVDSLWGLWGAVKTKAKAAVGIAVA-APVAVEADPAYAAAVAGLDELGTPIARAVKAVEAATKLKRGYAYEMSRQGHYLTQVAYVEE 378
            ++ S+ G+ GAVKTKAK+AVG+    AP+AVE DP Y A VA ++EL  P+A +VK +E+A  LKRG  YEMSR GHYLTQVA +E+
Sbjct:  452 SLTSIKGVLGAVKTKAKSAVGLGAGPAPIAVEPDPLYEAEVARIEELVAPVAGSVKIMESAAVLKRGVGYEMSRLGHYLTQVASLED 538
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BLAST of mRNA_S-ischiensis_contig11.2391.1 vs. uniprot
Match: D7FWD5_ECTSI (PX domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWD5_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 5.160e-17
Identity = 60/121 (49.59%), Postives = 79/121 (65.29%), Query Frame = 1 
Query:   34 GGGAGMGTESWPLSV-ARAAAGPYASHLAGTVD----SLWGLWGAVKTKAKAAVGIAVA-APVAVEADPAYAAAVAGLDELGTPIARAVKAVEAATKLKRGYAYEMSRQGHYLTQVAYVEE 378
            GGG G G     LSV A      Y ++++ +V     S+ G+ GAVKT+AK+AVG+    AP+AVE DP Y A VA ++EL  P+A +VK +E+A  LKRG  YEMSR GHYLTQVA +E+
Sbjct:  468 GGGQGPGWTGSALSVVANVGYEAYENYVSTSVSTSLTSIKGVLGAVKTRAKSAVGLGAGPAPIAVEPDPLYEAEVARIEELVAPVAGSVKIMESAAVLKRGVGYEMSRLGHYLTQVASLED 588
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2391.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KCW0_9PHAE2.900e-1757.47PX domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D7FWD5_ECTSI5.160e-1749.59PX domain-containing protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:3563595..3565057 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.6
Seed ortholog evalue2.6e-15
Seed eggNOG ortholog2880.D7FWD5
EggNOG free text desc.phosphatidylinositol binding
EggNOG OGsCOG5391@1,KOG2527@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size433
Cds size432
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2391.1prot_S-ischiensis_contig11.2391.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 3563595..3565056 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815620.164833-CDS-S-ischiensis_contig11:3563594..35636891622815620.164833-CDS-S-ischiensis_contig11:3563594..3563689Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3563595..3563689 +
1695739808.8668215-CDS-S-ischiensis_contig11:3563594..35636891695739808.8668215-CDS-S-ischiensis_contig11:3563594..3563689Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3563595..3563689 +
1622815620.1824856-CDS-S-ischiensis_contig11:3564182..35643621622815620.1824856-CDS-S-ischiensis_contig11:3564182..3564362Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3564183..3564362 +
1695739808.8774288-CDS-S-ischiensis_contig11:3564182..35643621695739808.8774288-CDS-S-ischiensis_contig11:3564182..3564362Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3564183..3564362 +
1622815620.1938615-CDS-S-ischiensis_contig11:3564650..35647351622815620.1938615-CDS-S-ischiensis_contig11:3564650..3564735Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3564651..3564735 +
1695739808.8888636-CDS-S-ischiensis_contig11:3564650..35647351695739808.8888636-CDS-S-ischiensis_contig11:3564650..3564735Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3564651..3564735 +
1622815620.2054691-CDS-S-ischiensis_contig11:3564984..35650561622815620.2054691-CDS-S-ischiensis_contig11:3564984..3565056Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3564985..3565056 +
1695739808.898369-CDS-S-ischiensis_contig11:3564984..35650561695739808.898369-CDS-S-ischiensis_contig11:3564984..3565056Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3564985..3565056 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2391.1

>prot_S-ischiensis_contig11.2391.1 ID=prot_S-ischiensis_contig11.2391.1|Name=mRNA_S-ischiensis_contig11.2391.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=144bp
PGSVTTDASDGGGGAGMGTESWPLSVARAAAGPYASHLAGTVDSLWGLWG
AVKTKAKAAVGIAVAAPVAVEADPAYAAAVAGLDELGTPIARAVKAVEAA
TKLKRGYAYEMSRQGHYLTQVAYVEEPAPDGGGGGSGDGRRPED
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mRNA from alignment at S-ischiensis_contig11:3563595..3565057+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2391.1 ID=mRNA_S-ischiensis_contig11.2391.1|Name=mRNA_S-ischiensis_contig11.2391.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1463bp|location=Sequence derived from alignment at S-ischiensis_contig11:3563595..3565057+ (Schizocladia ischiensis KU_0333)
CCCGGGTCCGTCACGACGGACGCCAGCGATGGTGGCGGTGGCGCGGGGAT
GGGGACCGAGTCGTGGCCACTGTCAGTGGCGCGGGCCGCCGCGGGGTGAG
TCAGAGTGGACGGCTCTTGTATGGTGATGATGGTCCGTGTGTAGCCGCGT
CATCATGATGTGCTGTGACGTGATGTGTACTCTTAATGTACTGTCGTTTT
GACGTCACATCACATCACATCACATCAACGTTATTGCGTAGGCCTTTGCG
GGGGGTTGGCGCGCTGTACTGCCTGCATCTCGTACTGTACAGTAGTACAG
TAGTAGGTTTACTGTACTGTACAGTGGTATGGTACAGTGCTCCTGTTGTG
GTCGATGGTCTCGGTCGAGACTACGCGCAAGTGCATGTGGCACGCGCGAC
ATGAGCATGTGTGTACTGTGGTGTGACACCCGCCCCGCCCGCCCTCGCGT
TTTGCGGCAGGCCTTACGCCGGCCACCTTTGTTGCCACCTTTTGTTTTTG
TTTCTTTAACGTGATAGCCACTAGTATGAGGACACTCAATCTCTCACACT
TGCGATTGTACCTCGTTCCGATTTATATGATTCGCCAGTCCTTACGCCAG
CCACCTGGCCGGGACGGTGGACTCGCTGTGGGGGCTATGGGGGGCGGTGA
AGACGAAAGCCAAGGCCGCGGTGGGCATCGCCGTGGCCGCGCCCGTGGCC
GTGGAGGCCGACCCGGCGTACGCCGCGGCCGTGGCCGGCCTGGACGAGCT
GGGGACCCCCATCGCCAGGTGTGACATTTTTACAGTTGCGCTGTACGGTT
GCACATACGGCAGTAGCTCTTCGAAGTATAGCACTTCGAAGTACATGCAC
GAGTAGCACCTGCAGCACTATGAAGTACTTCGAAGTACATGGTACTGCAG
TGTACTCCGGGTAGAGTTGTGCTTGCTTGGAAGCATTTTTTCATGTGTGT
CCCACGCGCCGCGGCTCACCCCGACCGACCGGCTTGGGTGCTACGAGTAC
AATGACAAACGTTCGAACGAACGAACGAACGAACGCCTGCATGCATGCAT
GGCCAGGGCCGTCAAGGCGGTGGAGGCGGCCACCAAGCTCAAGCGGGGGT
ACGCCTACGAGATGTCCCGCCAGGGGCACTACCTCACGCAGGTAAGGCGT
GAGAGAGACAGAGACACACACACACAGAGAGAGAGAGAGAGAGCGGGAGG
GAGGGAGAGGGAGAGAGAGAGAGAGAGAGGGAGGGAGAGGGAGAGGGAGG
GAGGGAGGAAGAGAGGGAGGGAGGGAGGGAGGGGGAGGGAGAGGGAGGGA
GAGAGAGAGAGAGAGAGAGAGAGAGGGGATTAACAGTAGGGGAGAAAGGC
TCAACCTTGGCCTCCTTGCGCCGCCGCTGCCGCCACACAGGTTGCATATG
TCGAGGAGCCGGCTCCGGACGGGGGGGGCGGCGGCAGCGGCGACGGCAGG
CGGCCGGAGGACC
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:3563595..3565057+

>mRNA_S-ischiensis_contig11.2391.1 ID=mRNA_S-ischiensis_contig11.2391.1|Name=mRNA_S-ischiensis_contig11.2391.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=864bp|location=Sequence derived from alignment at S-ischiensis_contig11:3563595..3565057+ (Schizocladia ischiensis KU_0333)
CCCGGGTCCGTCACGACGGACGCCAGCGATGGTGGCGGTGGCGCGGGGAT
GGGGACCGAGTCGTGGCCACTGTCAGTGGCGCGGGCCGCCGCGGGCCCGG
GTCCGTCACGACGGACGCCAGCGATGGTGGCGGTGGCGCGGGGATGGGGA
CCGAGTCGTGGCCACTGTCAGTGGCGCGGGCCGCCGCGGGTCCTTACGCC
AGCCACCTGGCCGGGACGGTGGACTCGCTGTGGGGGCTATGGGGGGCGGT
GAAGACGAAAGCCAAGGCCGCGGTGGGCATCGCCGTGGCCGCGCCCGTGG
CCGTGGAGGCCGACCCGGCGTACGCCGCGGCCGTGGCCGGCCTGGACGAG
CTGGGGACCCCCATCGCCAGTCCTTACGCCAGCCACCTGGCCGGGACGGT
GGACTCGCTGTGGGGGCTATGGGGGGCGGTGAAGACGAAAGCCAAGGCCG
CGGTGGGCATCGCCGTGGCCGCGCCCGTGGCCGTGGAGGCCGACCCGGCG
TACGCCGCGGCCGTGGCCGGCCTGGACGAGCTGGGGACCCCCATCGCCAG
GGCCGTCAAGGCGGTGGAGGCGGCCACCAAGCTCAAGCGGGGGTACGCCT
ACGAGATGTCCCGCCAGGGGCACTACCTCACGCAGGGCCGTCAAGGCGGT
GGAGGCGGCCACCAAGCTCAAGCGGGGGTACGCCTACGAGATGTCCCGCC
AGGGGCACTACCTCACGCAGGTTGCATATGTCGAGGAGCCGGCTCCGGAC
GGGGGGGGCGGCGGCAGCGGCGACGGCAGGCGGCCGGAGGACGTTGCATA
TGTCGAGGAGCCGGCTCCGGACGGGGGGGGCGGCGGCAGCGGCGACGGCA
GGCGGCCGGAGGAC
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