mRNA_S-ischiensis_contig11.2372.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2372.1
Unique NamemRNA_S-ischiensis_contig11.2372.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:3458004..3459312 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionAT hook and PHD-type zinc finger protein
Ec32 orthologEc-25_000880.1
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size449
Cds size171
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2372.1prot_S-ischiensis_contig11.2372.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 3458004..3459036 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815619.0774717-CDS-S-ischiensis_contig11:3458003..34581021622815619.0774717-CDS-S-ischiensis_contig11:3458003..3458102Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3458004..3458102 -
1695739808.152525-CDS-S-ischiensis_contig11:3458003..34581021695739808.152525-CDS-S-ischiensis_contig11:3458003..3458102Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3458004..3458102 -
1622815619.088215-CDS-S-ischiensis_contig11:3458964..34590361622815619.088215-CDS-S-ischiensis_contig11:3458964..3459036Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3458965..3459036 -
1695739808.1634126-CDS-S-ischiensis_contig11:3458964..34590361695739808.1634126-CDS-S-ischiensis_contig11:3458964..3459036Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3458965..3459036 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815619.0996041-UTR-S-ischiensis_contig11:3459036..34593121622815619.0996041-UTR-S-ischiensis_contig11:3459036..3459312Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 3459037..3459312 -
1695739808.1761107-UTR-S-ischiensis_contig11:3459036..34593121695739808.1761107-UTR-S-ischiensis_contig11:3459036..3459312Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 3459037..3459312 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2372.1

>prot_S-ischiensis_contig11.2372.1 ID=prot_S-ischiensis_contig11.2372.1|Name=mRNA_S-ischiensis_contig11.2372.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=57bp
MQVAHCPHTDKPNYSRGKCQSCYYVEYFAEKKAAGWTPKRKGKNSRRKGK
GGPAKGP
back to top

mRNA from alignment at S-ischiensis_contig11:3458004..3459312-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2372.1 ID=mRNA_S-ischiensis_contig11.2372.1|Name=mRNA_S-ischiensis_contig11.2372.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1309bp|location=Sequence derived from alignment at S-ischiensis_contig11:3458004..3459312- (Schizocladia ischiensis KU_0333)
CCAGGAACAACACAGGGCGAGGTGCGGGCCACGTCACAGTACTGATTTTA
AGTTAGTTTAACGTATGCGAGATCCGGGCCCCGTCCCAACAACCTACGGT
GGGGACCTCACCAGAAGCCCTTCTATATACTACTATATATCGACAGTCGA
TATTCGATAGTTTGACCCACACTAAATCCAAGTAGTTAGCAACGCCACCC
AAAATCAGTCGAGCCCGATAGCTATCTACTGATCGATATTCCATCACTGG
CCGCTCTCGTCCCGCTGGCCGTCCGCATGCAGGTGGCACACTGCCCCCAC
ACGGACAAGCCCAACTACTCGAGGGGGAAGTGCCAGTCGTGCTACTACGT
GAGTCCCTGTGCCTCCTGTGTTGCGTGCCCTGCCTGCTAAATAAGTCGTG
CTACTACGTGAGTCCCTGTGCCTCCTGCGTTGCGTGCCCTGCCTGCTGAG
TGCTGTACTGTACTGTACAACTGTACTGTACAGTGGTAGTGTATGTACTG
CGCCTACTACTGTAGTACGCGCTTGGCGCTCGGGAGTGCGGTAGACTAGT
TGACGAGCTGATGTGGCCACCTGCTACTGCGTGATTGTATCTCCTTCATC
CTCCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
GCTGCTCTGTAGTTTTCACCTTGAGGTACTACACTACAGTACAGTACAGT
ATACTGTGGTTTTCGTTGTTTTCGTGAGTAGGAAGTAGGTACTTCGAAGT
ACCATTTGCTGTACTGTACAGACGGCATCAGTGCCCTCTCTGCCTCCCGT
TTCCGAGCACTTCGCACACATACATACTGTGCTCCGCAGATTGTGTCCTA
TTTATGTACAGTGAGCTGTGTACCCTGACCTGGGCATGCCAGTGGTCATC
ATGCCAGTCTACTGTACTGTACAGTATATGCTTCCAAGTACTACTGCACA
ATACAGTACGCGCTGGGCCGGGCAGCCGACAGCCCTAAGCCAAAGCTTCG
GCATATCTGCGCGGTTCTGAACACTACATACTTCGAAGTACAGTAGTAGA
GTGTACATTTGAAGCAGCCATAGCTCTGCAACTCATTGAATATGAGTCCA
CGTGCCCCCGACCTCACCGCGTGCATGTGTGCGTGCGTGCATGCATGCGT
GCGCCCCACCCGCCCCCCCGCCGCCTCCGCCGGCCTACCTACGCGAAACG
CCGACCGAAGGTTGAGTACTTTGCCGAGAAGAAGGCCGCGGGGTGGACGC
CCAAACGCAAGGGCAAGAACAGCAGGCGCAAGGGCAAGGGTGGCCCCGCA
AAGGGCCCC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig11:3458004..3459312-

>mRNA_S-ischiensis_contig11.2372.1 ID=mRNA_S-ischiensis_contig11.2372.1|Name=mRNA_S-ischiensis_contig11.2372.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=342bp|location=Sequence derived from alignment at S-ischiensis_contig11:3458004..3459312- (Schizocladia ischiensis KU_0333)
ATGCAGGTGGCACACTGCCCCCACACGGACAAGCCCAACTACTCGAGGGG
GAAGTGCCAGTCGTGCTACTACATGCAGGTGGCACACTGCCCCCACACGG
ACAAGCCCAACTACTCGAGGGGGAAGTGCCAGTCGTGCTACTACGTTGAG
TACTTTGCCGAGAAGAAGGCCGCGGGGTGGACGCCCAAACGCAAGGGCAA
GAACAGCAGGCGCAAGGGCAAGGGTGGCCCCGCAAAGGGCCCCGTTGAGT
ACTTTGCCGAGAAGAAGGCCGCGGGGTGGACGCCCAAACGCAAGGGCAAG
AACAGCAGGCGCAAGGGCAAGGGTGGCCCCGCAAAGGGCCCC
back to top