mRNA_S-ischiensis_contig11.2366.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2366.1
Unique NamemRNA_S-ischiensis_contig11.2366.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2366.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:3415393..3415873 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size327
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815581.0913968-CDS-S-ischiensis_contig11:3415392..34156081622815581.0913968-CDS-S-ischiensis_contig11:3415392..3415608Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3415393..3415608 -
1695739783.5540261-CDS-S-ischiensis_contig11:3415392..34156081695739783.5540261-CDS-S-ischiensis_contig11:3415392..3415608Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3415393..3415608 -
1622815581.1028664-CDS-S-ischiensis_contig11:3415762..34158731622815581.1028664-CDS-S-ischiensis_contig11:3415762..3415873Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3415763..3415873 -
1695739783.5675454-CDS-S-ischiensis_contig11:3415762..34158731695739783.5675454-CDS-S-ischiensis_contig11:3415762..3415873Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3415763..3415873 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2366.1prot_S-ischiensis_contig11.2366.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 3415393..3415873 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2366.1

>prot_S-ischiensis_contig11.2366.1 ID=prot_S-ischiensis_contig11.2366.1|Name=mRNA_S-ischiensis_contig11.2366.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=109bp
CGNKYHQYGLCYRGRSKTGRAHDLVLGTFKGPYPGPNHLWHIAHIDHDIY
NNALSNLRYVPAKHNLSRSKTPRVRKGLSTTKPRAWSYVAPDSPDRLQWW
QHVTFPELE
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mRNA from alignment at S-ischiensis_contig11:3415393..3415873-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2366.1 ID=mRNA_S-ischiensis_contig11.2366.1|Name=mRNA_S-ischiensis_contig11.2366.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=481bp|location=Sequence derived from alignment at S-ischiensis_contig11:3415393..3415873- (Schizocladia ischiensis KU_0333)
TGTGGCAACAAGTACCACCAGTACGGCCTGTGCTACAGAGGCCGTTCGAA
GACCGGGCGCGCCCACGACCTGGTGCTGGGCACCTTCAAGGGGCCATACC
CGGGGCCCAATGTGAGCACGCCCGATACCTGCATGCCGAGATCCGTAAGT
TGCGCCTGCTGCCCCCAGGTGTGCATGCCCAAGGTGTCTGATGCCGTGCT
TCATGCCTCTGCTTCTGACGCCGGCACCTGCTTGCCGTTGCACTGTGCAC
CTGCATCCTGCGCAGCATCTGTGGCACATCGCCCACATCGACCATGACAT
TTACAACAACGCCCTGTCCAACCTGCGCTACGTCCCGGCCAAGCACAACC
TGAGCCGCAGCAAGACGCCCCGCGTGCGCAAGGGCCTGTCCACCACCAAG
CCCAGGGCGTGGTCGTACGTGGCGCCGGACAGCCCGGACCGGCTGCAGTG
GTGGCAGCACGTGACCTTCCCGGAGCTGGAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:3415393..3415873-

>mRNA_S-ischiensis_contig11.2366.1 ID=mRNA_S-ischiensis_contig11.2366.1|Name=mRNA_S-ischiensis_contig11.2366.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=654bp|location=Sequence derived from alignment at S-ischiensis_contig11:3415393..3415873- (Schizocladia ischiensis KU_0333)
TGTGGCAACAAGTACCACCAGTACGGCCTGTGCTACAGAGGCCGTTCGAA
GACCGGGCGCGCCCACGACCTGGTGCTGGGCACCTTCAAGGGGCCATACC
CGGGGCCCAATTGTGGCAACAAGTACCACCAGTACGGCCTGTGCTACAGA
GGCCGTTCGAAGACCGGGCGCGCCCACGACCTGGTGCTGGGCACCTTCAA
GGGGCCATACCCGGGGCCCAATCATCTGTGGCACATCGCCCACATCGACC
ATGACATTTACAACAACGCCCTGTCCAACCTGCGCTACGTCCCGGCCAAG
CACAACCTGAGCCGCAGCAAGACGCCCCGCGTGCGCAAGGGCCTGTCCAC
CACCAAGCCCAGGGCGTGGTCGTACGTGGCGCCGGACAGCCCGGACCGGC
TGCAGTGGTGGCAGCACGTGACCTTCCCGGAGCTGGAGCATCTGTGGCAC
ATCGCCCACATCGACCATGACATTTACAACAACGCCCTGTCCAACCTGCG
CTACGTCCCGGCCAAGCACAACCTGAGCCGCAGCAAGACGCCCCGCGTGC
GCAAGGGCCTGTCCACCACCAAGCCCAGGGCGTGGTCGTACGTGGCGCCG
GACAGCCCGGACCGGCTGCAGTGGTGGCAGCACGTGACCTTCCCGGAGCT
GGAG
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