mRNA_S-ischiensis_contig11.2361.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2361.1
Unique NamemRNA_S-ischiensis_contig11.2361.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig11.2361.1 vs. uniprot
Match: A0A7S4K956_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4K956_GUITH)

HSP 1 Score: 56.2 bits (134), Expect = 3.080e-5
Identity = 34/91 (37.36%), Postives = 45/91 (49.45%), Query Frame = 3 
Query:  657 AASGDEARVLEHIRNKGD-----------VDVRDGRRWSLLHHASFHGRLGVVRHLLQAGADKEARTAIELTPLCLACQNGHESVARELLK 896
            AA+G  A +L  + + G+           V+ RD  +WSLLHHASFHG+  V   LL  G +   +     TPL  A   GH  V R LL+
Sbjct:  203 AAAGGHAEILSELLDAGEATATGQETRSIVNARDLSKWSLLHHASFHGQEEVTAALLSRGVEVNLKDRWGRTPLSYAASMGHPGVMRLLLE 293
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BLAST of mRNA_S-ischiensis_contig11.2361.1 vs. uniprot
Match: A0A023EXX6_TRIIF (Putative ankyrin n=1 Tax=Triatoma infestans TaxID=30076 RepID=A0A023EXX6_TRIIF)

HSP 1 Score: 55.5 bits (132), Expect = 6.900e-5
Identity = 33/64 (51.56%), Postives = 42/64 (65.62%), Query Frame = 3 
Query:  708 DVDVRDGRRWSLLHHASFHGRLGVVRHLLQAGADKEART-AIELTPLCLACQNGHESVARELLK 896
            +VDVR+    + LH AS +GRLG+VR L+QAGA+  A+T    +TPL LACQN    V   LLK
Sbjct:  756 NVDVRNSEGVTPLHVASIYGRLGLVRLLVQAGANINAQTKTTNMTPLHLACQNQRTDVVDLLLK 819
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2361.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S4K956_GUITH3.080e-537.36Hypothetical protein (Fragment) n=1 Tax=Guillardia... [more]
A0A023EXX6_TRIIF6.900e-551.56Putative ankyrin n=1 Tax=Triatoma infestans TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:3378897..3381560 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-27_006900.1
Exons2
Model size909
Cds size531
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2361.1prot_S-ischiensis_contig11.2361.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 3379274..3381560 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815618.4233034-UTR-S-ischiensis_contig11:3378896..33792731622815618.4233034-UTR-S-ischiensis_contig11:3378896..3379273Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 3378897..3379273 +
1695739807.5897164-UTR-S-ischiensis_contig11:3378896..33792731695739807.5897164-UTR-S-ischiensis_contig11:3378896..3379273Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 3378897..3379273 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815618.4364464-CDS-S-ischiensis_contig11:3379273..33796491622815618.4364464-CDS-S-ischiensis_contig11:3379273..3379649Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3379274..3379649 +
1695739807.6018481-CDS-S-ischiensis_contig11:3379273..33796491695739807.6018481-CDS-S-ischiensis_contig11:3379273..3379649Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3379274..3379649 +
1622815618.4474537-CDS-S-ischiensis_contig11:3381405..33815601622815618.4474537-CDS-S-ischiensis_contig11:3381405..3381560Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3381406..3381560 +
1695739807.6116552-CDS-S-ischiensis_contig11:3381405..33815601695739807.6116552-CDS-S-ischiensis_contig11:3381405..3381560Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3381406..3381560 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2361.1

>prot_S-ischiensis_contig11.2361.1 ID=prot_S-ischiensis_contig11.2361.1|Name=mRNA_S-ischiensis_contig11.2361.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=177bp
MRRTHERRPLGRPTVSASSGMTSLTPLSAPKAHVPTGGGTKAAATATAAG
SRRGRAAAPLNGGRFVHGTPISVIGRARSAGGGSSSAGDIHSAAASGDEA
RVLEHIRNKGDVDVRDGRRWSLLHHASFHGRLGVVRHLLQAGADKEARTA
IELTPLCLACQNGHESVARELLKEVPA
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mRNA from alignment at S-ischiensis_contig11:3378897..3381560+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2361.1 ID=mRNA_S-ischiensis_contig11.2361.1|Name=mRNA_S-ischiensis_contig11.2361.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2664bp|location=Sequence derived from alignment at S-ischiensis_contig11:3378897..3381560+ (Schizocladia ischiensis KU_0333)
CGCACTGGCAGGTGCTAAGAAGGCCTCACAGCCCCGGAAAGTCGAGCTCG
ACTGCTTCGGAGGGGCTCAATCCAGAGGCAGGGAAGGTCCCCGCGCGGGC
AGGGCCCTCTTATTGTTTTCGTGGGCACGACGACGCGTTGTCGGTACGGT
AGACTTGGGGGGGAGGTGGGGGAGGACATTGGCGCACCGGGCGCCCTCCC
AGGGCACAAAAGCCCGCATTTACTTGGACATCCGCTCAACTCCGCCCCTC
CCGGGGGGCGGGGGGGGGTAAACGCGCTGGATGCGCTGCCCCCCCTGTCG
TCCCGCGTTCGAAGGTTCACTGAGGGGGGCCGCCCAACGGCCGTCCCTGC
TGCCCCCGAGGCCCGCCGAGCCGGGCCATGCGTCGCACGCATGAACGGCG
CCCGTTGGGGCGGCCCACGGTGTCCGCCTCCTCGGGCATGACCTCGCTTA
CGCCCCTATCGGCGCCAAAGGCTCACGTGCCGACCGGGGGGGGCACAAAG
GCAGCGGCTACAGCGACAGCGGCGGGCTCCCGGAGGGGCAGGGCGGCGGC
GCCGCTGAACGGGGGGCGGTTCGTGCACGGAACCCCCATATCCGTGATTG
GGCGGGCGCGGTCGGCCGGCGGGGGCAGCAGCTCGGCGGGCGATATCCAT
TCGGCGGCGGCGAGCGGCGACGAGGCCCGTGTGCTGGAGCACATCCGCAA
CAAAGGGGACGTCGACGTCCGGGATGGGCGGCGGTGGTCGCTGCTTCACC
ACGGTGCGTTCGGGGTGGGTGGTTTTTGGCGGTGCGTGGGCCCTCGGCAG
GGAGGCATGTTTGTTGTGTACTTCGAATATATATATATATATATATACAT
ATACTTCGAAGTCCCGGCCTGGGTGGGATGCGAGAGTCAATGGCTAAATG
GCTGTAGGGCTCCCTGTTGGAGGGCAACACCCGAAGTTTAACCTTGGCCT
GTCGACTAAGCACGCAATGTTATGTGGTTGTTGTGTGGGAGTGGCGCTCC
ATCGAAAAGGCGACCCTTTTTAGCCCTTGAGAGGAACCTCTGTTAGCTGT
GGCACATTTAGCCCTTGCCGTGTGTACATATATACTCACGTGGTGCTTGC
CGTAGTCCCGAGACAATTGACCCCGGGTCTCGTGTGGGGCGGAGCAGGTG
TGTGTGTGAACAGTACTCATGTCGGATAGCGTTGTTGCTACTCATTACCC
CGTGGCCTGTGTATGCCACCGACCGCTGGCCCAGCATACTACTGTACTTT
GCTGGACCACCGACCAGCCCCCGAAAGTAGAGTTCTGTATTGAACAAAAT
ATTGGTTGATGATATTGAGTACATATTGAATAATGGATAAGCTTATTGAC
GAAATATTGAATATCGCTGGAAATATTCAATTGATATAAATGATTTTCGG
CGTCAATGCAGAACTCTAGCCGAAGGGTGTTTTGCCTTTCGGCCATTGGC
CTCGCGTCCCTACTGCTCTATGCCGGGCCGGAGCATGCCGGGTTTTCACC
TCGTTGGCCAGGCGTGGGTTGCACACCCTTAGCGATAGAGGAAGTAAATT
ATGATACGGTACGCTACCCGGTTCCTCACTCAATCACTAAATATCGCAGT
ACTGTAAGTCAGAGCTACAAGCTGGTCCGGGCAAAAAAAGCCCAGAAACC
TTCCGCCGAAAGTTCTCGCTCGAGTTCTGCGGATTGGCCAATGAAATTTT
GGGATGGTATGGAGGGGACCGTGACGAAGAATCGCACTGCGGGACCTTTT
TTATTCAGCATTTTTGCCGTCAGTAACGAACATTTCCACACAATGATCCT
CCAGGGCTGGATATCTCGTCAGAACAAACAAAAGTCGCAGAACGTCCCTC
AATGCGATTGTTCATACTCGGTATTGGTCTGTGTACTGTAGTTCCCCGAA
ATCGAAGCCGATGGGTTTATTTTGCAAAATTGCAACTGGAATTTTTTATA
ACGTTCTTCAGGGATTAAGTGCCTGTGGTGCATGCTCCTACTAAACCCCT
ATACAGTAGTTACGCGGCCCAGTCGGGCGACGCCTCCATCGACAGGAGCA
CCCGAACTGTTGTAGTACTAGGAGCTGCACTACTCTGTAGTTCCGGGGTA
CTTGGAAGTTGTGCAGTTGTACAGTCCTGTACTACCTAGTAGTATACTCG
AGTATATATACCGTGTGTACTCACGTCTCCGTGCACGCCCTCGGCCCGAA
CAATCCTCGTTTATACTATATACATATGTACTCATTGGTTTGTCGTGCGA
CATAACCTTGCGTAGCAATGCCGACAGCCCCAAGTCGAAACTTCAGGTGT
GCCCTCCTACGCAGGATATGTAATCACGTTGTGCTTGCCGTTGTCCCGAC
ACCATTGACCCCGCGCCTCGTTCGAGGCGGAGCAGGACCCCTCCCAGTGG
TAATCGTATGCATACCCCTGTCCACCACGCTCGTGCACCCGCCCCCCCCC
ACCCACACCTTCCCCCCCACCCTGCACCTGCACCGGCTGGGTCCCATCCG
CACCCCCAGCCTCCTTCCACGGGCGGCTGGGCGTCGTCCGTCACCTCCTC
CAGGCCGGCGCGGATAAGGAAGCCCGGACAGCCATCGAGCTCACCCCTCT
TTGCCTCGCCTGCCAGAACGGCCACGAGTCCGTCGCACGTGAGCTCCTCA
AGGAGGTCCCTGCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:3378897..3381560+

>mRNA_S-ischiensis_contig11.2361.1 ID=mRNA_S-ischiensis_contig11.2361.1|Name=mRNA_S-ischiensis_contig11.2361.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1062bp|location=Sequence derived from alignment at S-ischiensis_contig11:3378897..3381560+ (Schizocladia ischiensis KU_0333)
ATGCGTCGCACGCATGAACGGCGCCCGTTGGGGCGGCCCACGGTGTCCGC
CTCCTCGGGCATGACCTCGCTTACGCCCCTATCGGCGCCAAAGGCTCACG
TGCCGACCGGGGGGGGCACAAAGGCAGCGGCTACAGCGACAGCGGCGGGC
TCCCGGAGGGGCAGGGCGGCGGCGCCGCTGAACGGGGGGCGGTTCGTGCA
CGGAACCCCCATATCCGTGATTGGGCGGGCGCGGTCGGCCGGCGGGGGCA
GCAGCTCGGCGGGCGATATCCATTCGGCGGCGGCGAGCGGCGACGAGGCC
CGTGTGCTGGAGCACATCCGCAACAAAGGGGACGTCGACGTCCGGGATGG
GCGGCGGTGGTCGCTGCTTCACCACGATGCGTCGCACGCATGAACGGCGC
CCGTTGGGGCGGCCCACGGTGTCCGCCTCCTCGGGCATGACCTCGCTTAC
GCCCCTATCGGCGCCAAAGGCTCACGTGCCGACCGGGGGGGGCACAAAGG
CAGCGGCTACAGCGACAGCGGCGGGCTCCCGGAGGGGCAGGGCGGCGGCG
CCGCTGAACGGGGGGCGGTTCGTGCACGGAACCCCCATATCCGTGATTGG
GCGGGCGCGGTCGGCCGGCGGGGGCAGCAGCTCGGCGGGCGATATCCATT
CGGCGGCGGCGAGCGGCGACGAGGCCCGTGTGCTGGAGCACATCCGCAAC
AAAGGGGACGTCGACGTCCGGGATGGGCGGCGGTGGTCGCTGCTTCACCA
CGCCTCCTTCCACGGGCGGCTGGGCGTCGTCCGTCACCTCCTCCAGGCCG
GCGCGGATAAGGAAGCCCGGACAGCCATCGAGCTCACCCCTCTTTGCCTC
GCCTGCCAGAACGGCCACGAGTCCGTCGCACGTGAGCTCCTCAAGGAGGT
CCCTGCCCCTCCTTCCACGGGCGGCTGGGCGTCGTCCGTCACCTCCTCCA
GGCCGGCGCGGATAAGGAAGCCCGGACAGCCATCGAGCTCACCCCTCTTT
GCCTCGCCTGCCAGAACGGCCACGAGTCCGTCGCACGTGAGCTCCTCAAG
GAGGTCCCTGCC
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