mRNA_S-ischiensis_contig11.2360.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig11.2360.1 vs. uniprot
Match: D7FSF1_ECTSI (Rab2A, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSF1_ECTSI) HSP 1 Score: 199 bits (506), Expect = 4.680e-61 Identity = 97/102 (95.10%), Postives = 99/102 (97.06%), Query Frame = 1
Query: 127 ISRAGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDNRQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMV 432
I GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMI+IDNRQ+KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMV
Sbjct: 12 IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMISIDNRQMKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMV 113
BLAST of mRNA_S-ischiensis_contig11.2360.1 vs. uniprot
Match: A0A7S2CHD5_9STRA (Hypothetical protein n=3 Tax=Dictyochophyceae TaxID=39119 RepID=A0A7S2CHD5_9STRA) HSP 1 Score: 199 bits (505), Expect = 6.840e-61 Identity = 96/102 (94.12%), Postives = 98/102 (96.08%), Query Frame = 1
Query: 127 ISRAGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDNRQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMV 432
I GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+NIDNRQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEA+QNSN NMV
Sbjct: 12 IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDNRQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEAKQNSNPNMV 113
BLAST of mRNA_S-ischiensis_contig11.2360.1 vs. uniprot
Match: A0A835Z1V8_9STRA (Rab2A, rab family GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1V8_9STRA) HSP 1 Score: 197 bits (502), Expect = 2.140e-60 Identity = 96/102 (94.12%), Postives = 98/102 (96.08%), Query Frame = 1
Query: 127 ISRAGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDNRQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMV 432
I GVGKSCLLLQFTDKRFQP+HDLTIGVEFGARMIN+D RQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMV
Sbjct: 12 IGDTGVGKSCLLLQFTDKRFQPLHDLTIGVEFGARMINVDARQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMV 113
BLAST of mRNA_S-ischiensis_contig11.2360.1 vs. uniprot
Match: A0A6V1NY85_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NY85_HETAK) HSP 1 Score: 197 bits (500), Expect = 4.030e-60 Identity = 96/102 (94.12%), Postives = 99/102 (97.06%), Query Frame = 1
Query: 127 ISRAGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDNRQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMV 432
I GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMI+ID+R+IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMV
Sbjct: 12 IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMIDIDSRKIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMV 113
BLAST of mRNA_S-ischiensis_contig11.2360.1 vs. uniprot
Match: M4B5K5_HYAAE (Uncharacterized protein n=26 Tax=Oomycota TaxID=4762 RepID=M4B5K5_HYAAE) HSP 1 Score: 196 bits (499), Expect = 5.710e-60 Identity = 95/102 (93.14%), Postives = 98/102 (96.08%), Query Frame = 1
Query: 127 ISRAGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDNRQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMV 432
I GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINI+N+QIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHLTRWLEEARQNSNSNM
Sbjct: 12 IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIENKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTRWLEEARQNSNSNMA 113
BLAST of mRNA_S-ischiensis_contig11.2360.1 vs. uniprot
Match: A0A2R5GRM2_9STRA (Ras-related protein Rab-2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GRM2_9STRA) HSP 1 Score: 196 bits (499), Expect = 6.480e-60 Identity = 95/102 (93.14%), Postives = 99/102 (97.06%), Query Frame = 1
Query: 127 ISRAGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDNRQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMV 432
I GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMI+IDNRQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHLTRWLEEARQN+N+NMV
Sbjct: 12 IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMISIDNRQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTRWLEEARQNANANMV 113
BLAST of mRNA_S-ischiensis_contig11.2360.1 vs. uniprot
Match: A0A485LBB8_9STRA (Aste57867_18783 protein n=7 Tax=Oomycota TaxID=4762 RepID=A0A485LBB8_9STRA) HSP 1 Score: 196 bits (498), Expect = 8.350e-60 Identity = 95/102 (93.14%), Postives = 98/102 (96.08%), Query Frame = 1
Query: 127 ISRAGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDNRQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMV 432
I GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMI+IDN+QIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHLTRWLEEARQNSNSNM
Sbjct: 12 IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMISIDNKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTRWLEEARQNSNSNMA 113
BLAST of mRNA_S-ischiensis_contig11.2360.1 vs. uniprot
Match: A0A024UMG6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UMG6_9STRA) HSP 1 Score: 196 bits (498), Expect = 2.000e-59 Identity = 95/102 (93.14%), Postives = 98/102 (96.08%), Query Frame = 1
Query: 127 ISRAGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDNRQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMV 432
I GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINID++QIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHLTRWLEEARQNSNSNM
Sbjct: 40 IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDSKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTRWLEEARQNSNSNMA 141
BLAST of mRNA_S-ischiensis_contig11.2360.1 vs. uniprot
Match: A0A7S2V0L3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0L3_9STRA) HSP 1 Score: 196 bits (497), Expect = 3.010e-59 Identity = 95/102 (93.14%), Postives = 99/102 (97.06%), Query Frame = 1
Query: 127 ISRAGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDNRQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMV 432
I GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINID++QIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR+TF+HLTRWLEEARQNSNSNMV
Sbjct: 42 IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDSKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFSHLTRWLEEARQNSNSNMV 143
BLAST of mRNA_S-ischiensis_contig11.2360.1 vs. uniprot
Match: A0A2D4BXC9_PYTIN (Rab2 family GTPase, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BXC9_PYTIN) HSP 1 Score: 198 bits (503), Expect = 6.480e-59 Identity = 96/102 (94.12%), Postives = 98/102 (96.08%), Query Frame = 1
Query: 127 ISRAGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDNRQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMV 432
I GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDN+QIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHLTRWLEEARQNSNSNM
Sbjct: 12 IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDNKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTRWLEEARQNSNSNMA 113 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig11.2360.1 >prot_S-ischiensis_contig11.2360.1 ID=prot_S-ischiensis_contig11.2360.1|Name=mRNA_S-ischiensis_contig11.2360.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=229bp MHKNTHPARARTHTHTQTNTTPHTHGRVHTASAAAPLQRADISRAGVGKSback to top mRNA from alignment at S-ischiensis_contig11:3359371..3361885+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig11.2360.1 ID=mRNA_S-ischiensis_contig11.2360.1|Name=mRNA_S-ischiensis_contig11.2360.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2515bp|location=Sequence derived from alignment at S-ischiensis_contig11:3359371..3361885+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig11:3359371..3361885+ >mRNA_S-ischiensis_contig11.2360.1 ID=mRNA_S-ischiensis_contig11.2360.1|Name=mRNA_S-ischiensis_contig11.2360.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1374bp|location=Sequence derived from alignment at S-ischiensis_contig11:3359371..3361885+ (Schizocladia ischiensis KU_0333)back to top |