mRNA_S-ischiensis_contig11.2355.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2355.1
Unique NamemRNA_S-ischiensis_contig11.2355.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2355.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:3302133..3303689 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size522
Cds size495
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2355.1prot_S-ischiensis_contig11.2355.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 3302133..3303663 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815580.893506-CDS-S-ischiensis_contig11:3302132..33022541622815580.893506-CDS-S-ischiensis_contig11:3302132..3302254Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3302133..3302254 -
1695739783.4573324-CDS-S-ischiensis_contig11:3302132..33022541695739783.4573324-CDS-S-ischiensis_contig11:3302132..3302254Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3302133..3302254 -
1622815580.9058132-CDS-S-ischiensis_contig11:3302925..33030461622815580.9058132-CDS-S-ischiensis_contig11:3302925..3303046Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3302926..3303046 -
1695739783.4698014-CDS-S-ischiensis_contig11:3302925..33030461695739783.4698014-CDS-S-ischiensis_contig11:3302925..3303046Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3302926..3303046 -
1622815580.9183378-CDS-S-ischiensis_contig11:3303411..33036631622815580.9183378-CDS-S-ischiensis_contig11:3303411..3303663Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3303412..3303663 -
1695739783.4833825-CDS-S-ischiensis_contig11:3303411..33036631695739783.4833825-CDS-S-ischiensis_contig11:3303411..3303663Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3303412..3303663 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815580.9354491-UTR-S-ischiensis_contig11:3303663..33036891622815580.9354491-UTR-S-ischiensis_contig11:3303663..3303689Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 3303664..3303689 -
1695739783.4960084-UTR-S-ischiensis_contig11:3303663..33036891695739783.4960084-UTR-S-ischiensis_contig11:3303663..3303689Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 3303664..3303689 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2355.1

>prot_S-ischiensis_contig11.2355.1 ID=prot_S-ischiensis_contig11.2355.1|Name=mRNA_S-ischiensis_contig11.2355.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=165bp
MADGGLQRRVSNWGQQQGPEASAESTNAALDSLSSRLSTLEESMPNHGDS
PGSSGLVRALFASMEDELSLLRRELSEMVASIEQGLQEASPTETEAFLKR
ANELSQRVETTAVAVRARCPPRELERRLSGSHFREGLTPRPLSVPVGRGA
RTRSLLGSPATTRAS
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mRNA from alignment at S-ischiensis_contig11:3302133..3303689-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2355.1 ID=mRNA_S-ischiensis_contig11.2355.1|Name=mRNA_S-ischiensis_contig11.2355.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1557bp|location=Sequence derived from alignment at S-ischiensis_contig11:3302133..3303689- (Schizocladia ischiensis KU_0333)
ACGGCAGGTCGCTTGGGGTAAACATAATGGCAGACGGCGGGTTGCAGCGT
CGCGTATCCAATTGGGGGCAGCAGCAAGGGCCGGAGGCCTCCGCCGAGAG
CACCAACGCTGCTCTGGATTCGCTATCGTCTCGACTGTCAACGCTGGAGG
AGTCCATGCCGAATCATGGAGATAGCCCTGGAAGCTCTGGGTTGGTTCGC
GCCCTCTTTGCCTCCATGGAGGACGAGCTCTCCCTCCTGCGCCGCGAACT
GTCGGAGATGGTGGCGAGCATTGAGCAGGCAAGCCTATTCCCGTGACGCA
GGCGAACAGAGTCGCACTACTGAACTTCGTCCCAACGTGACAAGACTCGT
GCTTGCCTGCCCGCAGACCATTGACTACGCGCACCAACACCAACATGTAG
CCGCCTCGACTGAAGCCGTCCTTCGCAGAAGCGCTTGCTACCTGCTCGAG
AGAATGCCTCTCGCCAGGGTTCTATTTTTTCGCGCGCCGCCCAGAAAAAC
AGTTACCGAAGCGTGCCGGGAGTTTGTGCTACAAGAGGACCCCCACCAAT
GCCCGGCAACAGCACTGTGGGCTAACTCTCCATACCTCCGCCCACCCTAA
ACCTCAACCCACCCGCCCGCCTACCTGGCTGCCGTTGGCGCAGGGCTTGC
AGGAGGCCTCGCCCACCGAGACTGAGGCATTTTTAAAGCGCGCCAATGAG
CTGTCGCAGAGAGTGGAGACTACGGCGGTGGCGGTCCGGGCCAGGTGCCC
GCCACGGGAGCTGGGTGAGCAGCGATCCACGCGGGCGTCATGTAATCTGC
CGGGGCCCCAGTGATATTGCCTGGCTTGGAGTGTGTTTGTGTTTTGTGTG
TGCTCTTGTGTGTGTGTGCTGGGTAGGCAGCGATCCATGTGGACGTTGTA
CTCTACAATGTTACGGGCCCCCAGGTATGTTAAATTTCTTGAAGTTTGTA
GTGTTCTATGCGTGCTGTGTGTGTGTATGTGTACACATGCATACATTGTG
TGTGTGTGTATGCATGCATGAGTGCGTGTGTGTGTGTGTGCGTGCCTGCG
TGCGCATGTGTGTGTGTGTGTACTCGCGTTGCGCTTGGCGCAGCCCCCGA
GAACATTAGACTCGTGTGTGTGTTCACCACGGTGGATCATATTTTCGCCC
TTGCTCACTACACTGTACTGCCATCCTTTTGGGGGCCGGTGAATCAGGAG
GGACCCTTGTTTAAGTGAGGCCTTTTCTTGCTTTCTCTCTCTCATACATA
CACTCGTTGGATACAGCACCGAGGATGAACTTTCAAACAACTGACTGTGA
CCCCCCGCCCTCCCTCCTTCTCCCTCCCTCCCTCCCTCCTTCTCCCTCAC
TCCCTCCCCATCTCCCTCCCTCCCTCCCCCCCTCCCTACCTCCCTCCCCC
CCCCCTCCGCCTCCCCCCCTTCCCTCCCTCCCAAGAGCGCCGCCTCTCCG
GCAGCCACTTCCGCGAGGGCCTTACCCCGCGCCCCCTATCCGTCCCGGTG
GGCCGTGGGGCCCGTACTAGAAGCCTGCTTGGGTCTCCCGCCACAACCAG
GGCCAGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:3302133..3303689-

>mRNA_S-ischiensis_contig11.2355.1 ID=mRNA_S-ischiensis_contig11.2355.1|Name=mRNA_S-ischiensis_contig11.2355.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=990bp|location=Sequence derived from alignment at S-ischiensis_contig11:3302133..3303689- (Schizocladia ischiensis KU_0333)
ATGGCAGACGGCGGGTTGCAGCGTCGCGTATCCAATTGGGGGCAGCAGCA
AGGGCCGGAGGCCTCCGCCGAGAGCACCAACGCTGCTCTGGATTCGCTAT
CGTCTCGACTGTCAACGCTGGAGGAGTCCATGCCGAATCATGGAGATAGC
CCTGGAAGCTCTGGGTTGGTTCGCGCCCTCTTTGCCTCCATGGAGGACGA
GCTCTCCCTCCTGCGCCGCGAACTGTCGGAGATGGTGGCGAGCATTGAGC
AGATGGCAGACGGCGGGTTGCAGCGTCGCGTATCCAATTGGGGGCAGCAG
CAAGGGCCGGAGGCCTCCGCCGAGAGCACCAACGCTGCTCTGGATTCGCT
ATCGTCTCGACTGTCAACGCTGGAGGAGTCCATGCCGAATCATGGAGATA
GCCCTGGAAGCTCTGGGTTGGTTCGCGCCCTCTTTGCCTCCATGGAGGAC
GAGCTCTCCCTCCTGCGCCGCGAACTGTCGGAGATGGTGGCGAGCATTGA
GCAGGGCTTGCAGGAGGCCTCGCCCACCGAGACTGAGGCATTTTTAAAGC
GCGCCAATGAGCTGTCGCAGAGAGTGGAGACTACGGCGGTGGCGGTCCGG
GCCAGGTGCCCGCCACGGGAGCTGGGGCTTGCAGGAGGCCTCGCCCACCG
AGACTGAGGCATTTTTAAAGCGCGCCAATGAGCTGTCGCAGAGAGTGGAG
ACTACGGCGGTGGCGGTCCGGGCCAGGTGCCCGCCACGGGAGCTGGAGCG
CCGCCTCTCCGGCAGCCACTTCCGCGAGGGCCTTACCCCGCGCCCCCTAT
CCGTCCCGGTGGGCCGTGGGGCCCGTACTAGAAGCCTGCTTGGGTCTCCC
GCCACAACCAGGGCCAGCAGCGCCGCCTCTCCGGCAGCCACTTCCGCGAG
GGCCTTACCCCGCGCCCCCTATCCGTCCCGGTGGGCCGTGGGGCCCGTAC
TAGAAGCCTGCTTGGGTCTCCCGCCACAACCAGGGCCAGC
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