mRNA_S-ischiensis_contig11.2352.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig11.2352.1 vs. uniprot
Match: D7FQJ2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQJ2_ECTSI) HSP 1 Score: 119 bits (299), Expect = 5.490e-27 Identity = 61/118 (51.69%), Postives = 88/118 (74.58%), Query Frame = 3
Query: 84 EMIIVDVMMEEGEHDGDKLHLNLDKSVIEDSGHSELTPEGLESVLTRVRKDRKKLYKLTVMFNKTHGKGLGNFLSNDMHVKEVTVLFEGISEEAMSEMTEGMIANITVRKLMLGGEEL 437
E+I+VD ++EEG +DGD HL LDK+++ SGH L P+ LE VLT VR+ ++KL KL+VMFN T G+G+GNF++ D V+EVTVL E +S++++ + E + N TV KL+LGG+EL
Sbjct: 28 ELIVVDTLLEEGLNDGDLPHLCLDKTLLMGSGHDTLGPKDLEDVLTSVRRTKRKLNKLSVMFNGTGGQGIGNFIAKDTSVREVTVLCEDLSDDSIQSLAEALETNKTVEKLLLGGKEL 145 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2352.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig11.2352.1 >prot_S-ischiensis_contig11.2352.1 ID=prot_S-ischiensis_contig11.2352.1|Name=mRNA_S-ischiensis_contig11.2352.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=357bp MGSKGSKTEGAKPKVQRSVEEMIIVDVMMEEGEHDGDKLHLNLDKSVIEDback to top mRNA from alignment at S-ischiensis_contig11:3269519..3281491- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig11.2352.1 ID=mRNA_S-ischiensis_contig11.2352.1|Name=mRNA_S-ischiensis_contig11.2352.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=11973bp|location=Sequence derived from alignment at S-ischiensis_contig11:3269519..3281491- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig11:3269519..3281491- >mRNA_S-ischiensis_contig11.2352.1 ID=mRNA_S-ischiensis_contig11.2352.1|Name=mRNA_S-ischiensis_contig11.2352.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2142bp|location=Sequence derived from alignment at S-ischiensis_contig11:3269519..3281491- (Schizocladia ischiensis KU_0333)back to top |