mRNA_S-ischiensis_contig11.2352.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2352.1
Unique NamemRNA_S-ischiensis_contig11.2352.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig11.2352.1 vs. uniprot
Match: D7FQJ2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQJ2_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 5.490e-27
Identity = 61/118 (51.69%), Postives = 88/118 (74.58%), Query Frame = 3
Query:   84 EMIIVDVMMEEGEHDGDKLHLNLDKSVIEDSGHSELTPEGLESVLTRVRKDRKKLYKLTVMFNKTHGKGLGNFLSNDMHVKEVTVLFEGISEEAMSEMTEGMIANITVRKLMLGGEEL 437
            E+I+VD ++EEG +DGD  HL LDK+++  SGH  L P+ LE VLT VR+ ++KL KL+VMFN T G+G+GNF++ D  V+EVTVL E +S++++  + E +  N TV KL+LGG+EL
Sbjct:   28 ELIVVDTLLEEGLNDGDLPHLCLDKTLLMGSGHDTLGPKDLEDVLTSVRRTKRKLNKLSVMFNGTGGQGIGNFIAKDTSVREVTVLCEDLSDDSIQSLAEALETNKTVEKLLLGGKEL 145          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2352.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQJ2_ECTSI5.490e-2751.69Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:3269519..3281491 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons11
Model size1648
Cds size1071
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815580.7056477-UTR-S-ischiensis_contig11:3269518..32700721622815580.7056477-UTR-S-ischiensis_contig11:3269518..3270072Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 3269519..3270072 -
1695739783.3077626-UTR-S-ischiensis_contig11:3269518..32700721695739783.3077626-UTR-S-ischiensis_contig11:3269518..3270072Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 3269519..3270072 -
1622815580.8585875-UTR-S-ischiensis_contig11:3281468..32814911622815580.8585875-UTR-S-ischiensis_contig11:3281468..3281491Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 3281469..3281491 -
1695739783.4483154-UTR-S-ischiensis_contig11:3281468..32814911695739783.4483154-UTR-S-ischiensis_contig11:3281468..3281491Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 3281469..3281491 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815580.7173193-CDS-S-ischiensis_contig11:3270072..32702231622815580.7173193-CDS-S-ischiensis_contig11:3270072..3270223Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3270073..3270223 -
1695739783.3173978-CDS-S-ischiensis_contig11:3270072..32702231695739783.3173978-CDS-S-ischiensis_contig11:3270072..3270223Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3270073..3270223 -
1622815580.7294803-CDS-S-ischiensis_contig11:3271188..32712931622815580.7294803-CDS-S-ischiensis_contig11:3271188..3271293Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3271189..3271293 -
1695739783.333977-CDS-S-ischiensis_contig11:3271188..32712931695739783.333977-CDS-S-ischiensis_contig11:3271188..3271293Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3271189..3271293 -
1622815580.7405808-CDS-S-ischiensis_contig11:3272225..32723091622815580.7405808-CDS-S-ischiensis_contig11:3272225..3272309Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3272226..3272309 -
1695739783.34565-CDS-S-ischiensis_contig11:3272225..32723091695739783.34565-CDS-S-ischiensis_contig11:3272225..3272309Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3272226..3272309 -
1622815580.7527838-CDS-S-ischiensis_contig11:3274636..32747201622815580.7527838-CDS-S-ischiensis_contig11:3274636..3274720Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3274637..3274720 -
1695739783.3565867-CDS-S-ischiensis_contig11:3274636..32747201695739783.3565867-CDS-S-ischiensis_contig11:3274636..3274720Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3274637..3274720 -
1622815580.7656355-CDS-S-ischiensis_contig11:3276395..32764791622815580.7656355-CDS-S-ischiensis_contig11:3276395..3276479Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3276396..3276479 -
1695739783.3694377-CDS-S-ischiensis_contig11:3276395..32764791695739783.3694377-CDS-S-ischiensis_contig11:3276395..3276479Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3276396..3276479 -
1622815580.77715-CDS-S-ischiensis_contig11:3277187..32772711622815580.77715-CDS-S-ischiensis_contig11:3277187..3277271Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3277188..3277271 -
1695739783.3772132-CDS-S-ischiensis_contig11:3277187..32772711695739783.3772132-CDS-S-ischiensis_contig11:3277187..3277271Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3277188..3277271 -
1622815580.7915828-CDS-S-ischiensis_contig11:3278431..32785291622815580.7915828-CDS-S-ischiensis_contig11:3278431..3278529Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3278432..3278529 -
1695739783.3896103-CDS-S-ischiensis_contig11:3278431..32785291695739783.3896103-CDS-S-ischiensis_contig11:3278431..3278529Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3278432..3278529 -
1622815580.8034377-CDS-S-ischiensis_contig11:3279732..32798071622815580.8034377-CDS-S-ischiensis_contig11:3279732..3279807Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3279733..3279807 -
1695739783.404312-CDS-S-ischiensis_contig11:3279732..32798071695739783.404312-CDS-S-ischiensis_contig11:3279732..3279807Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3279733..3279807 -
1622815580.8149703-CDS-S-ischiensis_contig11:3280725..32808561622815580.8149703-CDS-S-ischiensis_contig11:3280725..3280856Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3280726..3280856 -
1695739783.414137-CDS-S-ischiensis_contig11:3280725..32808561695739783.414137-CDS-S-ischiensis_contig11:3280725..3280856Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3280726..3280856 -
1622815580.834841-CDS-S-ischiensis_contig11:3281142..32812751622815580.834841-CDS-S-ischiensis_contig11:3281142..3281275Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3281143..3281275 -
1695739783.4242995-CDS-S-ischiensis_contig11:3281142..32812751695739783.4242995-CDS-S-ischiensis_contig11:3281142..3281275Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3281143..3281275 -
1622815580.8490224-CDS-S-ischiensis_contig11:3281426..32814681622815580.8490224-CDS-S-ischiensis_contig11:3281426..3281468Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3281427..3281468 -
1695739783.436204-CDS-S-ischiensis_contig11:3281426..32814681695739783.436204-CDS-S-ischiensis_contig11:3281426..3281468Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3281427..3281468 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2352.1prot_S-ischiensis_contig11.2352.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 3270073..3281468 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2352.1

>prot_S-ischiensis_contig11.2352.1 ID=prot_S-ischiensis_contig11.2352.1|Name=mRNA_S-ischiensis_contig11.2352.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=357bp
MGSKGSKTEGAKPKVQRSVEEMIIVDVMMEEGEHDGDKLHLNLDKSVIED
SGHSELTPEGLESVLTRVRKDRKKLYKLTVMFNKTHGKGLGNFLSNDMHV
KEVTVLFEGISEEAMSEMTEGMIANITVRKLMLGGEELGEHASQCLSKLL
TASLTLNELVLYNCSFGDNGTEKLSSGLAVNDNLVTLDLHYCLVGDKGAE
KLAESITNHPKLERLYLRHNRIGPAGALALARILESAPKLRELSLGYNGV
EGRGAMAIFSSLESTSILEYLDLGANDISSSRHAGSLRLARTVAVALPKN
SSLLQLNMRKNDLDMDACCLIRAAWVGMSNHRNQAPRTAANDKPLSDGLY
LPVEGL*
back to top

mRNA from alignment at S-ischiensis_contig11:3269519..3281491-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2352.1 ID=mRNA_S-ischiensis_contig11.2352.1|Name=mRNA_S-ischiensis_contig11.2352.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=11973bp|location=Sequence derived from alignment at S-ischiensis_contig11:3269519..3281491- (Schizocladia ischiensis KU_0333)
GAGACGAGTGCGGAACGTCCAAGATGGGCTCGAAAGGCAGCAAAACGGAG GGTGCAAAGCCGAAAGTGAGGTCGTATGCTGCTGAGTCACCTCTAATTAT CCGGAGCACATTCTTGTTGCACAGCCGCACGGTGTCGTGGCACCTATGGG GCGCCGTGGCACCTATTGCAATGACGTTCCCGCTTGTGCTTCTCGTGTCC GGCGCGGCTCGTTCAGGTCCAGCGCTCGGTTGAAGAGATGATCATAGTGG ATGTGATGATGGAAGAGGGCGAACACGATGGCGACAAGCTCCATTTGAAC CTTGACAAGTCAGTTATCGAGGACTCTGGCCACAGTGAGCTCACCCCAGG TGTGTTGGCGGCTGATGCAAGCTGATTCTCTCCCTTGCATATATATATAT ATATATATATCTGTGTGAGTCTGTGTGAGATAAGAGAGATAGAGAGGGGG GGGGCGGGGGGGGAGGGAGAGAGAGAGAGACAGACAGACACAGACAACAC ACACACATTGCATCGTAAGCAACACGTGTACGCACACAGATGCCCGACAA TGTGTGCAGGCCCCATATGGATTCTACGCTCACCTACAGCACACGTCCAT TGTGCCATGTATGCGCCGCTACAATACGCGTGCAGAGGGGCTCGAGAGCG TCCTGACAAGAGTCCGAAAGGATCGGAAGAAGTTGTACAAGCTCACCGTC ATGTTCAACAAGACCCACGGCAAGGGCCTAGGCAATTTCCTCTCCAACGA CATGCATGTCAAGGAGGTGAGTCCCTCGATAACCCCCCCCCGCGCCTTGT TCTTAGTTCCTTGACGTGATAATCACTAATATAAGAGCATTCAATTCTTA AATGAAACAACTACTAGTACGAGAACAGTCAATCGCACACACGGGCGATT GTACCTCGCTACAGTTTATATGAATCACCCCCCCAGTATCCCAAGCGCGC CGACTGTGGTGATCACTAATATAATAACATTCAATTCCTAAATGAAACAA CAACTACTAGTAATACGAGAACAGTCAATCGCACACACATGCGATTGTAC CTCGTTACAATTTATATGAGTCACCGCCGAGTGGCTCGCCCGCATCTGCA AGAGCGCAAATACTGGGTCAGCATAAGGGGACCGCCGGTTGGCCCAGTGG CACTCATGGCCGCCAGACGCTTATCTCGCTGCCCGCCCGCCCTGCGCTGC TGCTGCTGGCCCATCGATTTGGTGGCCTGAACCCGTGGCAGCCGGTCTTG GGCCATATGAATATACTGTATATATACTTTGAAGTACAGTACTTCGTATA TGTATATACTACGTAGTAGAACTCCATGTACTCACGTGTGCTTGCCGTAG TCCCGAGACCATTGACCACGGCCCTCAGTCGAGACGGACCATAGCCAACC TAACGCAGCAGTACCTACTCAGGGCTGCCGCCTGGGGTGGCCTGTGGCGC ACACGGATGCAGGCGCTAGATGCCCCTTCTCCAAGTACAGTTCAGCTCTG CTCGTACGATTGTCCGGGCATAGTTCGATGCATCGAGCAAGAGAGTGTAT CCCTCCAGGGGCCAGCTTATTGCACACTGCTCGACCCGGGGGGCGCCACG CAAGCAAGCACAGGCGTATGTACATCGAAGTATGACAGAGAGCCCCCCCC CCGCCGCCGACGCACACGTTCTGCCGCGGCCCAGGTGACAGTGCTGTTTG AGGGTATCTCGGAAGAAGCGATGTCGGAAATGACCGAGGGGATGATTGCC AACATCACGGTGAGGAAGGTTGAGCTAGCAGTGCTAGTGGGAGTGTTGTT GTACTCGTTTGCTACTACTGTATTAACAGGAACAACACTGGGCGAGGTGC AGGCCACGTCACTAAAGACCTCAGCAGTGGCCCTTCCCTAGCTCGCCAGG GGAAGTTTGTGTGGGGAAGGGGAGAAGGAGGAGGCACTGTACTGTAGTAT GTCTCGAGAGTAGAAGTGATAGCCGCGCGTGACCCGCCCCCGCCGCTTCC CGCTCATGCGCTGGTCAGGGTGTCATCGGGCGTCGGCGCACCCTCGCCTT TTGCTGTTTTACTTCGAAGTAAGAAAGGGTGACAGGTCGGCGAGGTACTC GACGTGCACGTGTGCCTGCCGTTCCGGTTCTAGGCGGAAGGCGGTGTGTG TCCCAGGCTCTTGGTCGTGAAACGTCTGTCCGATGCACTTGAGGCATGTG CTGCGGTACAGTAGGTACGTACTTCCAAGTAGATACAGTAGTACTAGTGG AGGAGTAGTAGTATACTAGTACTACTACCACTAGTAGCAGTAGTAGTACT ACTTGGTAGTAGTAGTAGTAGTAGTAGTAGTAGTACTTGGTAGTAGTAGT GCTTGAGTAGTAGTAGTAGTAGTAGTACTTCGTAGTAGTAGTACTTGAGT AGTAGTAGTAGTAGTAGTAGTACTTGAGTGGTAGTAGTAGTAGTACTTGG TAGTAGTAGTACTTGAGTAGTGGTACTAGAGTGGTTGAGTACCACTGTAC TAGTACTGCACAACTTTCCCCTGGCGAGCTAAGGAAGGGCCACTGTCGAG GTCTCTAGTGACGTGGCTTGCACCTCGCCCTGTGTTGTTCCTTATAATAC TAGTACTACTACTACTACTATGAGTACTACTACTACTACTACTGTTGGTC GTACTAGTACTACTACCAATACTACTACTACCTCTACGATGCACGCATCG ACTGACTGGTAGCTCTCCTCTGCTTGGGCATGACTACTACTGTACACTAC TACTCCTGCTTTGTACTGCGCTCATCAGTTTACTCGGCGGCTTCACCGGG TGTCCGTTCCGTCTCCTTCCCTCCACAGGTGCGCAAACTGATGCTCGGGG GCCTTTTTTGTTGTACTGCATGCACAGAGACGTGAGTACACACACACTGC ACTCATCCGTTTACTCGGTGGCTTCACCGGGTGTTGTCCGTCCCATCATA TTCCCTCCACAGGTGCGCAAACTGATGCTCGGAGGCGAGGAGCTGGGGGA ACACGCCTCCCAATGCCTGTCCAAGCTGCTCACCGCCAGCCTGACCTTGA ACGAGCTCGTGTGAGTAACAGCTCCCGGAACTATCTGCTCCTCCACCGGG CGGCTTCCGCGGTCTCGTGTTTCACTTGGGGATTGATCATGGGACGCGTG TGAGGTGGTGTGGTGTCAAGCTACAAGTAGAAGCACTGCGCTGATCAAGT CTTTTAGAATGGAAACCCTTGTGAGGCGGCGTGACGTCAAGCTACAAGTA CTGTACTGATCAAGTCTTTTAGAATAGAAATCCGTGTGAGGTGGTGTCAA GCTACAAGTAGAAGCGCTGTACTGATCAAGTCTTTTGGAATGGAAATCCG TGTGAGGTGGTGTCAAGCTACAAGTACACCTCGGATCAAGTCTTTTCGAA TAGAACCCGTGTGAGGCGGTGTGACGCAAGCTACAAGTACTGTACTGATC AAGTCTTTTAGAGTAGAAATCTGTGTGAGGCGGTGTGATGTCAAGCTACA AGTACTATACGGATCAAGTATTTTAGAATGGAAATCCGTGTGAGGCGGTG TCAAGCTACAAGTACACCTCGGATCAAGTCTCTTAGAATAGAACCCGTGT GAGGCGGTGTGACGTCAAGCTACAACGTCAAGCTACAAGTACTGTACTGG TCAAGTCCTTTAGAATGGAAATCCGTGTGAGGTGGTGTCAAGCTACAAGT ACACCTCGGATCAAGTATTTTAGAATAGAACCCGTGTGAGGCGGTGTGAC ATCAAGCTACAAGTACTGCACGGATCAAGTCTTTTGGAACAGAACCCGTG TGAGGTGGTGTCAAGCTACAAGCATGTACGGATCAAGTCTTTTAGAACAG AATCCGTGTGAGGTGGTGTGATGTCAAGCTACAAGCACTGTACGGATCAA GTCTTTTGGAACAGAACCCGTGTGAGGCGGTGTGACGTCAAGCTACAAGC ATGTACGGATCAAGTCTTTTACTCCGAAGTAGAATAGAACCCGTGTGAGG TGGTGTGATGTCAAGCTACAAGTGCTGGTGCTATACTTACTGATCAAGTC TTTTGGAATACGAAACCCGTCGCATCACAAGTGACACAACTGTGCAGGTT CACCCCAGCGGGAGGTCCCGGTTGTGAATTCATGTTCATACGGCTATCCT ACGGCAAGGAACACATGAGTACGGTACCCCCGGCGCCACAAAAACAACCT CTCCGCGCCCTCCTCCTCAGCCTGTACAACTGCTCGTTCGGAGACAACGG CACAGAAAAGCTTTCCTCAGGACTGGCGGTGAACGACAATTTGGTAACGC TCGAGTGAGTTCACGCCCCAGGCCAGGGGCCCTGGGTGGCAGGGCTGGGG GGGCGGTGGTGGAGTGAGGGGGGCGTGGCTGACCCAGCCCGACCGGGCGG GACCAATGGGTCGCCCGCTAAGCGTTTCTGTGCGCTCGATGGCCCTGTGT TGCATGGTTGCGGCTGCGCAAGGAGGGGGGGCGAGGGGGAGAGAGAGAGA GGGGGGGCGGGGGGGGGAGGGAGGGAGGGAGGGAGAGAGAGATCGCAATG TGTGTTGCGCTTGTGTGTGCGTTGTCTCGCTTGTGTGTGTGTGTGTTGTC TCACGTTGTCCTGGCGTGTATGTACTTCGAAGCAGTAGGTACAGCACAGT ACAGTACAGCATTGCAGTACAGAACAGCGCAACTGTAGTGCAGCACAGCA CAGCACAGCTCCCGCTTGTACAGCAGTCCTGTACAATAGGCACGGTAGCC CACGTAGTGTCCCTAGGCCCGTGGCACAGCACAGCTCCCGCCCGGCCGCT CCAAGTTCTCGCCAGTGATGGAATATCGATCAGTAGATAGTTATCGGGCT CGACAGATTTTGTGGGTGGCGTTACTATCTACTTGGGTTTAGTGTGGGTC GGACCATCGAATATCGAGTATCGATAGATACTCTGGTTCTCACTGCCCCG TGCCCTGCCCCCCACCGCTTGCCGTCCTTCCGCCTCCCGGCCTGCCTCTG GCATGCTTGCAGTCTGCACTACTGCTTGGTGGGGGACAAGGGGGCCGAGA AATTGGCAGAGTCCATCACGAACCACCCGAAGCTAGAGCGTCTATAGTGA GTGCCCCGCGATGCCCCGCCCCCCGGGCAGTGATGGAACATCGATCAGTA GATAGTTATCGGGCTCAACTGATTTTGTGGGGGCGTTACCAACTGCTTGG ATTTAGTGCGGGTCAAACTATCGAATATCGACTATCGATAGATAAATACA TCAGCACTACCGACAAATAGGTTGATTTGCTTAGATATTCCATCCCCAGG GCCGCCCCGCGGCACGTCATGGGAACCGCTTGCTCTCCCGGCCGAGGGGG GCGGGGGGGGGAAGGATCGGCCAGCTGGGGTCACACAGTATGCGGTATGC ACTGATACAGTGTGTGTGCTTGCTTGGTTGGCACGGCTGTAATAAGCACT TGATGCGGTGCATGGCACAGTAGATGCTAGCAGGAACGACACAGGCGAGG TGCAGGCCACGCCACTACAGACCTCAACAGTGGCCCTTCCTTAGCTCGCC GGGGGAGGTTTGTGTGGCGCAGCAGGTACTTCCAAGCACACTAGCTGTAC TGCGCCCCGCTGTTCTAGCTGCCTTATTGTGCTTGTTTTGTGCGCACATC CCCACAGACAACCGCTGCTCTGGGGGTGAAGCCCCCCAGTGGGAGAGGAC GGTCGGTCCTCACGCGACTCTTGCTCCCGGTGGTTCATATAAATTGTGAC GAGGTGCAATCGCACGTGTGTGAGATTGAGTGTTCTCGTATTAGCGGTTA TCCCATTGAAGATATGAGTGTTCTCGTATTTGTGGGTGTCACATCAAAGA ATTTAAAACCGGTGTTTGCGTTTCTCGTGGTGCGCTTGCCGCCAGCCGTA CGAACGAGCGTCCTCACAACGGTGGGGGGACAAACTCACCCCCTATCTTG TGCCCGCACGCCGAGCAACTGACTCGTGTGCTGCGTGCCGAAAGTTTGCT GCGCGATTGCTTGCTTCCGGGGCTCGGGGTGGCCATGGATAAGTACTTTC GACCTCTGCGGCCTGCCTGATGATGATTTCGGTGTGGTGGTGCGGTGTGA TGTGATGTGACGTGAAAGCTAAAAAAGTGACTTGAGTGGAGCGCGCATCA CGCCGCATCACATCGCGTCATTGGTTCTTGTATTTTCTTGATGCTTTCCT CATGGTATCCTTGACATACTTGAAGTGTATCCTATGATGCAGCTTCGGAG CGCACGAAAAGCACAACTAGTAAATACGATGTATATACTCTCCATATGTA ATATACTGTATATACTACTTCGAAGTACGTAGTGCATACTATGTACTTCA AAGTACTTGTTCGAAGTGGTATTGTACAGCAGTGCTGTACAACGTTTTCG GAAGGGGTGGTGGCCCTTCAGGGGCGACGAGTAGCTTTAGCAACCCCCGC CCCGCCCCTCGCGCTCGGAACCGGCACGTACCTGCACTCCCGTACCCTTG CCGAAGCGGCGCGCCCAACATGCCAGCTATTAGGCACAACAGAGTTGTGG ACGGTGGGCGGTGGTTCGGCCCACAAAGTGAGCTGCACACTTCCTTTGCT CTTCCCCACCCGCCCGCCCACCTGCCCTGTGCCCCGGACAGTCTTAGCGA ACATGCCAGCAATTAGGTAGAGTTGTGGGCGGTGGGTGGTTTCGGCCCAC AAACGGAGCTGCACACCTCCTTTGCTCTTCCCATCCCGCCCGCCCGCCCA CCCGCCCTTTGCCCCGGGCAGTCTTAGGCACAACAGGATCGGGCCTGCAG GCGCCCTGGCATTGGCTCGCATCCTGGAAAGCGCGCCGAAACTTAGGGAG CTCTCGTGAGTTGTCGGCGGCAGCGCACTTGCAACCCTGCAGTAGTACTT GGAAGTGCGATACACACAGTGGTGCGCCGCACCTGGAGAACAGCAGTAGG CAGGCTTAAATATTGAGTGTTGCTCCATGTCGGCTGAGGCGCGCGGTCAA TGGTCTTGGGACTACGGCAAGCGCAACCAGAGTGCGCACTTCTCTGAAGT GGAGGGAGGTGGTTCGGCAGCACCCGTACAGGAATACTTGCACGGTCCCC TGGAGTAGGCCTGAGAGTGTACAGTATTGGTATACATACAAATACGGTAC CGATTCTGCCGTCATTTCTTGTTGGCCTGCCTATGTACTTTCTGCGGGAT CGCCGGACTTCCCCTCCCCCGGGGGGGCCACAGCGTTGGCCTCCAGGGTC GCTCACCCCCTCGTCCCCCCCCAACTTTTTGGCCGGTGAGGCGGCGGCGG CTGCGGGTGTGGGGCTGGCAGCAGCGTACCGCAGTCCTCCAAAGGGTTAT AGGTATATATCGTACAGAATACCTAAGGTGCACTGAGGGGAGCTAGAGAT GTCTCGTAGACTTGAGAGCGCCACAAGGGGCTGTAAAGAGTCTTGTATAC GAGACTAGAGGCCATGTGTGTCGTTTTAAACATCATGGATACAGATGTTC TGACACAATCGAGTGTACTTGTAACCCCGCACTGGCCCTCCCGGTGGCCA ATCAAATGTTGCCTGGTCACACTCACCCCCTCCCCCCACCCAACCATGGG CGGCGACTGCGGCGTCGGCGACGACGGGGACACCCGTTTGCGCCTCGCTG CACCACATGCCCCCCCGCCGGGGTGGCGCGGACGTACGTCGTAGGACAGG GTTGGCACTTAGCCCCTAAGTGGTGCCCTTTTAGGCCCTTAATTAGAGTT AAATAGGGGTAGTTAGACCTAAAATTAAGGCTCATTTGGCCCAAATTCAC CTCTCAGTGCCAAGCCTGGAGCTAAGTTTGAGGGCGTCCTCCCAGCGGGC GGCCAGGTCCTCCTGGAGCAGGGCCTTAATTAGAGGTAACGATTCGCTAT CGCGAGGAGCTCGCACTCCGGATACTATTAGTAGCTATCGTTAATTTTGC CACCCAACGCGCCAACCCCGACATGCCGGCACCCCATCCCGCCTCCACGG CACCCACATGGGCAATTTTTAGCCACGTGCACTGTCCATGACCGTGGACC CCGGGCCTCTCTGTGCCCCCTAATACCTCCCCCACCGGCCGCCGTGAGTT ACCATTCGCTTCAGTACTATTGAAAATACGGTAGTGATTGTACGACCTGG ACCCGATGCGTAAGTACAGTAGACCTCAAGTACCCGTCTACTGCAAGTCG GTTTTTGTGCATCACTTGGCCAGTCATCGTCCATCCACCCGTACCTGATG CTGCTTGCCTTGTGACGCACGATTTTGTGGAAGAGTTGGCTGCTACACGT GCAAAGTTCGCCGAACAGCACATGGCAATTTCAAGAGCTACTCATGCCAT GTACTTCAAAGTTACTATGTACTGTACTACTGTACAGTGATCTTCAGGCG AGCACTGGAGACAGAATTGCCGTGTTCCGCGCGTATTGTGCTCACCAGGC TTGGTGACTATTGTTGTAGAAAGCCCTCATCTCAGTACAAATGAGCAAGC ACATGACGAAACAGAGGGTGTTCCTTATTCCAGAGCTCTGTAAAAGTCGG CAACTAAGTACATCATCCGAGCCTCTGGCAGTCTCGACTCCGACCCAGGG GCTGGCCATAGGGCGTTTGATGCACGTCGCGAGACGCGTCGCCACAGGGC GCCACCATCCCCAACCACCACGACCCCATCAGACTGTCTTCAGAGTGCAG AGGCAGGTTTCCACAAGTCGGCAAACCATAGGCCAGGGCGATTCCGAGAA AGTGGGGGATCGCCTGGGCATCAACGAACGGGTAGGAGCACATAGCTAAT GAGGCAGCGATCGTCGCCGAGTCATCAGAGCGGTCCGTGCCGTCCGTCCC GTCCTCCCCTCGTGCCGGCACAGAATGCCAGACACGCCCCTGGAGGCCGG TGCACGCCCCTGCAAACCCCCCTTCCCTGCGACCAGGTCCGCACTGAAAA ACTGGCTCTATCGCGTGACATCTGCCAGCCAAATCGGGCATCGGGGTTGG CCGAGAACTCGGCGACGCAGCGCTCGGCTCGGCGGGCCACGGCCCTAGAA AACGCCAAGCAAGTAGCTACGCCTCGCTCGCTCGCTCCGCTCCCTCGCTC CGCTCGCAATCAAGGGTAATTAGACCTAAAATGAAGGCTATTTAGGCCCT AATTAACCTCTTAAGTGCCAACCCTGTCGCAGGCTGGGGTACAACGGCGT GGAGGGCAGGGGCGCCATGGCCATCTTCTCGTCGCTGGAGTCCACATCCA TCTTGGAGTACCTGGAGTGAGTAGTCCGTGGATCCATCTCCGAGTTGCGT TGTTTAGATGCCGACGCTAGAGAGCGATGAAACAGAGTTTTGTGGGCGGA AGAGTTCGTACGGTTGTACGCTGTTTACACACTGAGACGGTCGATGCAGC GGGCGGCTCACGCTACCGAAGGCCAATTCCGCGTGATCGAGGCTGGCTCG TACATCGACCAGAGAGGATGCATAGGCGCGGTTGGCGCTGAGCTGACCGG AGCCGCGGACTCTGCTGATTTGTTTCCATAGCCATCTTCTCGTCGCTGGA GTCCACATCCATCTTGGAGTGCCTGGAGAGTGAGTAGAGTGAGTAGTCCG TGGATCGATCTCCGAGTTGCCGCCTCCGCCTCCGCCTCCGCCGTCGCCGC CGCCGCCGCCGCTGCTGCCACTGCAAACGAGCCAGCCGCGAAGCGAAGCG CCCCGACTCGCTCGCGCGCTGCGAGCAGCTTACCAGTAGGATATACAATT ATGAGTACGAGTACTCGTGTAGATACTACTGTAGTGGAGAGCTACAAGGA AAGGCCACTGTTGAGGTCTCTAGTGACGTGGCCTGCACCTCGCCCTGTGT TGTCCTGTTAATATTGTAGCGGCTGCCTGAGTCACTTGCTGCCCCTGGAG GCACGTCACCCCTGCAGCACAGAACACTCGAGGCCGACCACACGACGTTG TCCTTGCTGCCCCACCGTGGCGGACGGCCCGTACCAACCACCACCCCCCC CTACCCCCAGCCCCCCCCCTTGTTCAACAGTTCCTGTTTTCGTCGCCTCC CCCCTGGTCCGCTCTGGCTCCAGCCCCCCCCCCTTGTTCAACAGTTGCTT ACTGTTTTCATCACCCCCCCCATGAGTCCGCCCCTCCTCTTTGTCCTCCT CCTCTTCCTCGTGTGGTGCCCCCGCCCGCCCGCGCGCCCTGCCGCCAGCT TGGGAGCGAACGACATCTCAAGCTCCAGGCACGCAGGCAGCTTGCGACTG GCACGGACGGTCGCCGTGGCCTTGCCGAAGAACTCATCCCTCCTGCAGTT GAAGTGAGTCGTCCAGCCTGGGACGTCTGAATCCGAGTCCCCCGGCCCTC GGACGGTTCAGATTTTTGCGAGCGAGCGAGACTCAGATGATGACTCATAT ATTGTGACGAGGTACAATCGCACGTGTGTGAGATTTGAGTGTGATCTCGT ACTGCAGTAGTCGGTGGTTGCCCCATCTAGTAAACAACCTCGGATGATGA CAACGTCCCTCGTTGCATGGGATGGTCTTTACTAGCAAGCTCCTGGAGTG ACGAATCCCTTTCGAGACTGACAGCAACACTTGAAAGCTCGTAGCAGAGT TCAATTCAGAGGGACTCGGAGTGAGTTCACAACGTTCACCTCGACGCTTG AAGCGAGAGGTGAAGCGGCTGAATCGGGCCGTTTCGAAGGGGGGGGGGCT CCTTTGACAGTTTCAAGCGAGCAGCAGCGGCTGGGCCTCGGGATTGGCTG GCCGGCGCGCGCCCGCCGCCGACCCCATTTGCCCGCGCCTACGCCTGATG CCGCGCTGTAGCTCGTGGGGAGCACTCAAGGCTGTCTCTCTCGCTCCCCC CGCCCCCACCCCCGCCCCCCGGTAATTTTCACATGTGCACCTGACTTGGA GAGACCGTCAGCTTGGAGGCTCGTTAGATGCCGAGGTCATTTCCCCGGGT TCGTTCATATACAAGGCTCAGCGGCAGGCGGCAGGCTTCGTTCAAGCTTC CTGTCCCCTCCCCCTGCCCCCGGCCAGGACGATTCTGCCGCGTGCACGGG TTGTTAAACTTCCCAGGGAAGGGACTGACCCGTGTGCCGCACCGCCCTTT GTCGGTTGGTTTCTTTGGCCCCGCCATGTGGGGCGTTGTCTTTGCGTGCG GCTGGACGACAACCACCAATACGAGAACGCTCAATTCTTAAATGTGATCA CCACTAGCGAGAACACTCAATCTCACACACTTGCGATCGTACCTCGTTAC AATTTTTATGAATCACAGCATGCGCAAGAACGATCTGGACATGGACGCGT GCTGCCTCATCCGGGCCGCCTGGGTGGGCATGTCCAACCACCGGAACCAG GCGCCCAGGACCGCGGCCAATGACAAGCCCTTGTCCGACGGCCTGTACCT TCCTGTTGAGGGCTTGTGACGATGGCGGGGGCTGGCTGGTCCCGCGTGGC GTCCGCGCGGGCGTACGTGGGGAGGCCAGCTTTTGTATTACAACACATTA TTTTCTCGTGCTCGAGTACCATACTGATCAGCGTTCCAAGTGCTACGTGG TGTGGTTGTACACGAATGTACGAGCGCTTGTAATGTAGTGCATGCACAGT TCAAAAGCTTGCCAGGGGCGGGAGGGAGATGAATTGCTCCTCAGCCGTCG ACGGCGCTATATTTGTCAATGGTCTCGGGACTGGTACGGCAAGCACAACG AGAGTACAACACATACTTCGAGATACTTCGCAAACGCTCATTTTCGCGCG CTTTTTCGCGAAACGAAAACGAACCGTTTCTGCTAACCGAAAACAAGAAG CACGAATTATAGGCAGCTGTAAACCCAACAGTCCACGGGTGCCTGTGCGG ACTCCTCCCACAACACACGGGGCGCACAGAAAATGATTTTGTAGCTCTGT TGTGACTGGCCCTGTAATGCCTCCTTGGAAACTGAAACCGACAATGTGAA ACCAAAAATAACACGCCTTCCAG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig11:3269519..3281491-

>mRNA_S-ischiensis_contig11.2352.1 ID=mRNA_S-ischiensis_contig11.2352.1|Name=mRNA_S-ischiensis_contig11.2352.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2142bp|location=Sequence derived from alignment at S-ischiensis_contig11:3269519..3281491- (Schizocladia ischiensis KU_0333)
ATGGGCTCGAAAGGCAGCAAAACGGAGGGTGCAAAGCCGAAAATGGGCTC
GAAAGGCAGCAAAACGGAGGGTGCAAAGCCGAAAGTCCAGCGCTCGGTTG
AAGAGATGATCATAGTGGATGTGATGATGGAAGAGGGCGAACACGATGGC
GACAAGCTCCATTTGAACCTTGACAAGTCAGTTATCGAGGACTCTGGCCA
CAGTGAGCTCACCCCAGGTCCAGCGCTCGGTTGAAGAGATGATCATAGTG
GATGTGATGATGGAAGAGGGCGAACACGATGGCGACAAGCTCCATTTGAA
CCTTGACAAGTCAGTTATCGAGGACTCTGGCCACAGTGAGCTCACCCCAG
AGGGGCTCGAGAGCGTCCTGACAAGAGTCCGAAAGGATCGGAAGAAGTTG
TACAAGCTCACCGTCATGTTCAACAAGACCCACGGCAAGGGCCTAGGCAA
TTTCCTCTCCAACGACATGCATGTCAAGGAGAGGGGCTCGAGAGCGTCCT
GACAAGAGTCCGAAAGGATCGGAAGAAGTTGTACAAGCTCACCGTCATGT
TCAACAAGACCCACGGCAAGGGCCTAGGCAATTTCCTCTCCAACGACATG
CATGTCAAGGAGGTGACAGTGCTGTTTGAGGGTATCTCGGAAGAAGCGAT
GTCGGAAATGACCGAGGGGATGATTGCCAACATCACGGTGACAGTGCTGT
TTGAGGGTATCTCGGAAGAAGCGATGTCGGAAATGACCGAGGGGATGATT
GCCAACATCACGGTGCGCAAACTGATGCTCGGAGGCGAGGAGCTGGGGGA
ACACGCCTCCCAATGCCTGTCCAAGCTGCTCACCGCCAGCCTGACCTTGA
ACGAGCTCGTGTGCGCAAACTGATGCTCGGAGGCGAGGAGCTGGGGGAAC
ACGCCTCCCAATGCCTGTCCAAGCTGCTCACCGCCAGCCTGACCTTGAAC
GAGCTCGTCCTGTACAACTGCTCGTTCGGAGACAACGGCACAGAAAAGCT
TTCCTCAGGACTGGCGGTGAACGACAATTTGGTAACGCTCGACCTGTACA
ACTGCTCGTTCGGAGACAACGGCACAGAAAAGCTTTCCTCAGGACTGGCG
GTGAACGACAATTTGGTAACGCTCGATCTGCACTACTGCTTGGTGGGGGA
CAAGGGGGCCGAGAAATTGGCAGAGTCCATCACGAACCACCCGAAGCTAG
AGCGTCTATATCTGCACTACTGCTTGGTGGGGGACAAGGGGGCCGAGAAA
TTGGCAGAGTCCATCACGAACCACCCGAAGCTAGAGCGTCTATATCTTAG
GCACAACAGGATCGGGCCTGCAGGCGCCCTGGCATTGGCTCGCATCCTGG
AAAGCGCGCCGAAACTTAGGGAGCTCTCTCTTAGGCACAACAGGATCGGG
CCTGCAGGCGCCCTGGCATTGGCTCGCATCCTGGAAAGCGCGCCGAAACT
TAGGGAGCTCTCGCTGGGGTACAACGGCGTGGAGGGCAGGGGCGCCATGG
CCATCTTCTCGTCGCTGGAGTCCACATCCATCTTGGAGTACCTGGAGCTG
GGGTACAACGGCGTGGAGGGCAGGGGCGCCATGGCCATCTTCTCGTCGCT
GGAGTCCACATCCATCTTGGAGTACCTGGACTTGGGAGCGAACGACATCT
CAAGCTCCAGGCACGCAGGCAGCTTGCGACTGGCACGGACGGTCGCCGTG
GCCTTGCCGAAGAACTCATCCCTCCTGCAGTTGAACTTGGGAGCGAACGA
CATCTCAAGCTCCAGGCACGCAGGCAGCTTGCGACTGGCACGGACGGTCG
CCGTGGCCTTGCCGAAGAACTCATCCCTCCTGCAGTTGAACATGCGCAAG
AACGATCTGGACATGGACGCGTGCTGCCTCATCCGGGCCGCCTGGGTGGG
CATGTCCAACCACCGGAACCAGGCGCCCAGGACCGCGGCCAATGACAAGC
CCTTGTCCGACGGCCTGTACCTTCCTGTTGAGGGCTTGTGACATGCGCAA
GAACGATCTGGACATGGACGCGTGCTGCCTCATCCGGGCCGCCTGGGTGG
GCATGTCCAACCACCGGAACCAGGCGCCCAGGACCGCGGCCAATGACAAG
CCCTTGTCCGACGGCCTGTACCTTCCTGTTGAGGGCTTGTGA
back to top