mRNA_S-ischiensis_contig11.2340.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2340.1
Unique NamemRNA_S-ischiensis_contig11.2340.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:3168276..3169263 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size274
Cds size270
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2340.1prot_S-ischiensis_contig11.2340.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 3168278..3169263 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815616.7715943-CDS-S-ischiensis_contig11:3168277..31683341622815616.7715943-CDS-S-ischiensis_contig11:3168277..3168334Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3168278..3168334 -
1695739806.491359-CDS-S-ischiensis_contig11:3168277..31683341695739806.491359-CDS-S-ischiensis_contig11:3168277..3168334Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3168278..3168334 -
1622815616.787365-CDS-S-ischiensis_contig11:3168751..31688921622815616.787365-CDS-S-ischiensis_contig11:3168751..3168892Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3168752..3168892 -
1695739806.5001965-CDS-S-ischiensis_contig11:3168751..31688921695739806.5001965-CDS-S-ischiensis_contig11:3168751..3168892Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3168752..3168892 -
1622815616.8076766-CDS-S-ischiensis_contig11:3169191..31692631622815616.8076766-CDS-S-ischiensis_contig11:3169191..3169263Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3169192..3169263 -
1695739806.5093126-CDS-S-ischiensis_contig11:3169191..31692631695739806.5093126-CDS-S-ischiensis_contig11:3169191..3169263Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3169192..3169263 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2340.1

>prot_S-ischiensis_contig11.2340.1 ID=prot_S-ischiensis_contig11.2340.1|Name=mRNA_S-ischiensis_contig11.2340.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=90bp
TRAFTAGGVSKLGLGGGAYRHIVRRQATESGAVDGTLPGAADARLAGWRV
AKAAEAPPPTDVGGGSPDSNQVACGDVVEYPLSQRAKEDA
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mRNA from alignment at S-ischiensis_contig11:3168276..3169263-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2340.1 ID=mRNA_S-ischiensis_contig11.2340.1|Name=mRNA_S-ischiensis_contig11.2340.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=988bp|location=Sequence derived from alignment at S-ischiensis_contig11:3168276..3169263- (Schizocladia ischiensis KU_0333)
ACGAGGGCTTTCACTGCGGGCGGGGTCTCTAAGCTGGGCCTGGGTGGAGG
CGCGTATCGACACATCGTACGCGTGAGTGCCGGTCCCATCATGTTCATGT
TTTGTGGCACTGTTGCTGTGATTGGCTGGGCGCCAGAAAGAGCATGTCCA
GGGGGGTTTGTTTGCTCTCGAGGAGGCCAGAATCAACATGGGAGCGACCT
TGAAGGCAACCATTCACACTGTTTCATCGCTGCCCCTTTTGACAGTAGAA
GCGACAATGCCTGTCCTTTGCGCCTGGGTGGGGAGGGCTGCTCAAGGCTG
ACGAGGTCATGCTATGTCCACATGGAATCCGCTGCCACAACGATGCCCGT
GTGCCTGCCTGGATGTATCAGCGACAGGCAACGGAGAGCGGCGCCGTTGA
TGGGACATTGCCGGGGGCGGCCGATGCGCGCTTGGCAGGGTGGCGGGTAG
CCAAAGCGGCAGAAGCACCACCACCAACCGACGTTGGCGGGGGAAGCCCA
GATAGCAATCAGGTAGGCACCGTGGCCATACGGTGCAGGACACTATGGAA
AGGTCACGCAGGGTTTCAATACTTCAGTAGTCAAACTGCCGCAGAAGTTG
AAGGCCTGGTACTGTACTGTGCGGTACAGTAGAGCCATTGTACTTGAGTA
CTGCATTTCTGAGCGCTTGTACAGTGCGTGCGGGCACATCCCGAAAGGAA
AAGGAGGAGCCCTGGCCGTACCTGCACGCGTGTGCGCACACGCGCATGAT
GCACTCGAACAGACACGCACGCGCGCGCGCACACACACACACATACACAC
ACACCCCACTAGCGCACAAACGCGCATGCGAACTTTTTGTCGCGACCCCC
ACCGCCACCGCCGCCCCCGCTGTCGCCATGCCCGCACGTGTGTGTGCGTG
CGTGCGTGCGTGCGTGCATGTGTGCCCAGGTGGCGTGTGGCGACGTGGTG
GAGTACCCCTTATCGCAGCGCGCCAAGGAGGACGCCGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:3168276..3169263-

>mRNA_S-ischiensis_contig11.2340.1 ID=mRNA_S-ischiensis_contig11.2340.1|Name=mRNA_S-ischiensis_contig11.2340.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=540bp|location=Sequence derived from alignment at S-ischiensis_contig11:3168276..3169263- (Schizocladia ischiensis KU_0333)
ACGAGGGCTTTCACTGCGGGCGGGGTCTCTAAGCTGGGCCTGGGTGGAGG
CGCGTATCGACACATCGTACGCACGAGGGCTTTCACTGCGGGCGGGGTCT
CTAAGCTGGGCCTGGGTGGAGGCGCGTATCGACACATCGTACGCCGACAG
GCAACGGAGAGCGGCGCCGTTGATGGGACATTGCCGGGGGCGGCCGATGC
GCGCTTGGCAGGGTGGCGGGTAGCCAAAGCGGCAGAAGCACCACCACCAA
CCGACGTTGGCGGGGGAAGCCCAGATAGCAATCAGCGACAGGCAACGGAG
AGCGGCGCCGTTGATGGGACATTGCCGGGGGCGGCCGATGCGCGCTTGGC
AGGGTGGCGGGTAGCCAAAGCGGCAGAAGCACCACCACCAACCGACGTTG
GCGGGGGAAGCCCAGATAGCAATCAGGTGGCGTGTGGCGACGTGGTGGAG
TACCCCTTATCGCAGCGCGCCAAGGAGGACGCCGTGGCGTGTGGCGACGT
GGTGGAGTACCCCTTATCGCAGCGCGCCAAGGAGGACGCC
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