mRNA_S-ischiensis_contig11.2322.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2322.1
Unique NamemRNA_S-ischiensis_contig11.2322.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig11.2322.1 vs. uniprot
Match: W5N3L5_LEPOC (WD repeat domain 60 n=3 Tax=Lepisosteidae TaxID=7915 RepID=W5N3L5_LEPOC)

HSP 1 Score: 60.5 bits (145), Expect = 2.300e-7
Identity = 39/119 (32.77%), Postives = 61/119 (51.26%), Query Frame = 1 
Query:   52 VAFSRVKSSLAATAHA--REPGAAPLEGSDVVCVWDVAAAEPRSPPACTNILVGEGRFTCLVLPAAAGQAHLVMAATAEGCVLLWDLREPRSMHARQVLEAKLPGLSCALRAPTYTTAS 402
            + FS+++  +  + H   +  GA  L+   +VC+W++   EP  P     +L+ E    C     + GQA LV A TA+G V++WDLRE  S+H       K+      LR PT++T S
Sbjct:  687 IRFSQIQRQVMLSVHRPLKSSGAVRLDSKSIVCIWNI--WEPSRPQ---KVLICESEIQCCCF--SPGQATLVFAGTADGSVIVWDLREHSSLHHTM----KIGEQDWTLRFPTFSTDS 794
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BLAST of mRNA_S-ischiensis_contig11.2322.1 vs. uniprot
Match: A0A8C5N2M8_9ANUR (Dynein 2 intermediate chain 1 n=3 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5N2M8_9ANUR)

HSP 1 Score: 58.5 bits (140), Expect = 1.050e-6
Identity = 44/115 (38.26%), Postives = 59/115 (51.30%), Query Frame = 1 
Query:   58 FSRVKSSLAATAHAREPGAAPLEGSD--VVCVWDVAAAEPRSPPACTNILVGEGRFTCLVLPAAAGQAHLVMAATAEGCVLLWDLREPRSMHARQVLEAKLPGLSCALRAPTYTT 396
            FS  +  L  +AH    G   L  SD  V+CVW++   EP SP    ++LV E    C       G+  LV A TA+G V+LWDLRE  S+H R  L   L     + R+PT++T
Sbjct:  648 FSETQRHLLLSAHGYCNGNKSLVLSDKFVICVWNI--WEPSSPQ---HVLVCESEVGCCCF--GPGKVALVFAGTADGSVVLWDLREDTSLHQRVTLADGL----WSFRSPTFST 751
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BLAST of mRNA_S-ischiensis_contig11.2322.1 vs. uniprot
Match: A0A7J7RK24_RHIFE (Uncharacterized protein n=5 Tax=Rhinolophus TaxID=49442 RepID=A0A7J7RK24_RHIFE)

HSP 1 Score: 56.6 bits (135), Expect = 4.760e-6
Identity = 41/98 (41.84%), Postives = 52/98 (53.06%), Query Frame = 1 
Query:  103 EPGAAPLEGSDVVCVWDVAAAEPRSPPACTNILVGEGRFTCLVLPAAAGQAHLVMAATAEGCVLLWDLREPRSMHARQVLEAKLPGLSCALRAPTYTT 396
            E  A+PL+GS V+CVWD+     R  P    +LV E   TC  L     +A L+ A TA G V++WDLRE   MH R V   KL   S   R  T++T
Sbjct:  661 EARASPLDGSYVLCVWDI---WQRCGP--QKVLVCESEVTCCCLSPV--KAFLLFAGTAHGSVVVWDLREDSRMH-RYV---KLSDCSWTFRTATFST 747
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BLAST of mRNA_S-ischiensis_contig11.2322.1 vs. uniprot
Match: A0A8C4AKU1_9TELE (WD repeat domain 60 n=1 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C4AKU1_9TELE)

HSP 1 Score: 53.5 bits (127), Expect = 4.930e-5
Identity = 36/99 (36.36%), Postives = 53/99 (53.54%), Query Frame = 1 
Query:  103 EPGAAPLEGSDVVCVWDVAAAEPRSPPACTNILVGEGRFTCLVLPAAAGQAHLVMAATAEGCVLLWDLREPRSMHAR-QVLEAKLPGLSCALRAPTYTT 396
            +P A  L+   ++C+W +   EP  P     IL+ E    C     + G+  LV+A TA G V+LWDLREP S+H +  V E++       LR PT++T
Sbjct:  239 KPSAVRLDSKTIICIWHI--WEPSRPQ---KILLYESEVCCCCF--SPGKTTLVIAGTAVGSVVLWDLREPSSLHHKLSVGESEW-----ILRYPTFST 325
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BLAST of mRNA_S-ischiensis_contig11.2322.1 vs. uniprot
Match: A0A8C4ALF6_9TELE (WD repeat domain 60 n=3 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C4ALF6_9TELE)

HSP 1 Score: 53.5 bits (127), Expect = 5.370e-5
Identity = 36/99 (36.36%), Postives = 53/99 (53.54%), Query Frame = 1 
Query:  103 EPGAAPLEGSDVVCVWDVAAAEPRSPPACTNILVGEGRFTCLVLPAAAGQAHLVMAATAEGCVLLWDLREPRSMHAR-QVLEAKLPGLSCALRAPTYTT 396
            +P A  L+   ++C+W +   EP  P     IL+ E    C     + G+  LV+A TA G V+LWDLREP S+H +  V E++       LR PT++T
Sbjct:  682 KPSAVRLDSKTIICIWHI--WEPSRPQ---KILLYESEVCCCCF--SPGKTTLVIAGTAVGSVVLWDLREPSSLHHKLSVGESEW-----ILRYPTFST 768
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2322.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
W5N3L5_LEPOC2.300e-732.77WD repeat domain 60 n=3 Tax=Lepisosteidae TaxID=79... [more]
A0A8C5N2M8_9ANUR1.050e-638.26Dynein 2 intermediate chain 1 n=3 Tax=Leptobrachiu... [more]
A0A7J7RK24_RHIFE4.760e-641.84Uncharacterized protein n=5 Tax=Rhinolophus TaxID=... [more]
A0A8C4AKU1_9TELE4.930e-536.36WD repeat domain 60 n=1 Tax=Denticeps clupeoides T... [more]
A0A8C4ALF6_9TELE5.370e-536.36WD repeat domain 60 n=3 Tax=Denticeps clupeoides T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:2933783..2936726 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.8
Seed ortholog evalue1.7e-19
Seed eggNOG ortholog2880.D7FXE1
EggNOG free text desc.dynein heavy chain binding
EggNOG OGsKOG1587@1,KOG1587@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionWD40 repeat
Ec32 orthologEc-18_000070.1
Exons3
Model size562
Cds size561
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2322.1prot_S-ischiensis_contig11.2322.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 2933783..2936726 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815614.9513266-CDS-S-ischiensis_contig11:2933782..29340071622815614.9513266-CDS-S-ischiensis_contig11:2933782..2934007Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2933783..2934007 -
1695739805.2658188-CDS-S-ischiensis_contig11:2933782..29340071695739805.2658188-CDS-S-ischiensis_contig11:2933782..2934007Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2933783..2934007 -
1622815614.9641502-CDS-S-ischiensis_contig11:2935366..29355341622815614.9641502-CDS-S-ischiensis_contig11:2935366..2935534Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2935367..2935534 -
1695739805.2754169-CDS-S-ischiensis_contig11:2935366..29355341695739805.2754169-CDS-S-ischiensis_contig11:2935366..2935534Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2935367..2935534 -
1622815614.977417-CDS-S-ischiensis_contig11:2936558..29367261622815614.977417-CDS-S-ischiensis_contig11:2936558..2936726Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2936559..2936726 -
1695739805.2847047-CDS-S-ischiensis_contig11:2936558..29367261695739805.2847047-CDS-S-ischiensis_contig11:2936558..2936726Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2936559..2936726 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2322.1

>prot_S-ischiensis_contig11.2322.1 ID=prot_S-ischiensis_contig11.2322.1|Name=mRNA_S-ischiensis_contig11.2322.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=187bp
ASSPGLRALIGGAAVVGVAFSRVKSSLAATAHAREPGAAPLEGSDVVCVW
DVAAAEPRSPPACTNILVGEGRFTCLVLPAAAGQAHLVMAATAEGCVLLW
DLREPRSMHARQVLEAKLPGLSCALRAPTYTTASAGAGVGGAVVQGLHHK
TGPRSASASTAESAAAITGHGHSSPVVSLLQIPRAVG
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mRNA from alignment at S-ischiensis_contig11:2933783..2936726-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2322.1 ID=mRNA_S-ischiensis_contig11.2322.1|Name=mRNA_S-ischiensis_contig11.2322.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2944bp|location=Sequence derived from alignment at S-ischiensis_contig11:2933783..2936726- (Schizocladia ischiensis KU_0333)
GCGTCGTCGCCGGGCCTGCGGGCGCTGATCGGTGGGGCGGCTGTGGTGGG
CGTGGCGTTCAGCCGGGTCAAGAGCTCACTGGCGGCGACGGCGCATGCCC
GGGAGCCGGGGGCGGCCCCCCTGGAGGGCAGCGACGTGGTGTGTGTGTGG
GATGTAGCTGCGGCGGAGGTGAGGGGGGGAAGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGACCGGGGCAGGGAGGGAGGGAAGCGCAGGGTTGGCACTT
AACCCCTAATTGGTGCCTTTCAGGCCCTTAATTAGAGGTAATTAGGGGTA
GTTAACCTAACATGAAGGCTAATTAGGCCCTAATTAACCTCTAAGTGCCA
ACCCTGGGGAAGAGGGAGGGGGGGGGGGAGAAGAGGGGGAGGGGAGGGAG
GAAGGGAGGGAGGGAGGGAAGGAGGGAGGGCAGGAGGAAGGGAGGGCGGA
CAAGGAAGCGGGGGGGGCTGCACCATGAGGTACTTGCCTTGACCGTATGA
TTGTTCGCCATGCGTCCCACGTAGGAGCCGCATGGTACGGAAAGCTGTTT
CCTCTGTCATTGGGGAGACTGTTGAAGACCGTTCTGTTTGGCCCGTGGCA
TGTGGTCACTTGGCCTGCTGCCCGTACCCAAGGGAGGGAGGGGGGCAAGA
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGTGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGGGGGGGGAGGGAGGGCGG
GGGTTGGCGTTGCCGGCATGGACTACTTGTACCACATCCTGCATTGCAAA
GTAAGCGGTACAGAGTAGCAGTGCTCAAACCTTTCCTTGAAAAGGCCATT
CTAGGTACACGGCAGCGGGAAAGTGTCCTATGCACCTGACTGACGGTGAA
CTCGGGGGATGGCTCCGCTCCCTCCTTCCGCCCCCCCCCCCCCCCCCCCC
CCCCCCTCCCTCCCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCCCGCTCCCTCTCCCTCTCCCTCCCTCCCCCTCTCTCTCTCACTC
TCTCTCTCCCCCTTCCCCCCCCCCCCTCTCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCTCTCTCTCTCTCTGGGAAACTTGCGGCCGCAGCCAAGAAG
CCCCCCCGCCTGTACCAACATCCTCGTGGGGGAGGGGCGCTTCACGTGCC
TGGTGCTGCCTGCGGCGGCGGGTCAGGCGCACCTTGTGATGGCCGCCACT
GCGGAGGGCTGTGTGCTTCTCTGGGACCTCAGGGAGCCCCGATCCATGCA
TGCACGCCAGGTGGGAGGCAGGAGCAATAGCAGGTTCTCTAATGACTATC
CCATGAGGAGAGGACATGGACAAAACAGTAGTCTCTCGGGAGCTAGCAGC
ATCTGTAGATAGGCAAAGAGGAGGAATAGCAGGTTCCTTAGTGACTATCC
CATGAGGAGAGTCTGGGGAAACAAGTAGTCTCTCAGGGGCTAGCAGCATC
TGTAGATAAGGCAGAGAGAGACCCAGAAGGCTAGGAGTAGCTGCAGGGGA
GCAGAAAGAGGTGGCCTGTAATGAAAATGTCTCAACAGTCTGCTTGTTGT
GGCGATGGCACTCTCGGGTGTGCGGGTTTCCTGAGGAGGGCTTTGCTGAT
TTTTTCGCCCCCCCTTGGCTAAGCAGTAGTGTGGTACCTATCGGACGTCA
TGCTTGATTGCACTGCAAGCAAGCGCTGTACGAGTACTCGAGTAGAGCTC
TACAGTACTTGCAGTACGGAGTACTGTTGTGCCAGAGTACTTCCAAGTGT
TGAGTAGTAGTGGTAGTAGTGGTTGTGCTTCCAGGTATGCAAGCAAAGTT
GACTTGCAGCGGATGGCGCGGAGGAGAGGAGGAGGAGGAGGAGGAGGAGG
AGGGCTGCCTGCCATGCCTACTCCTTGGCGTGTCAAGGAAGCCCCGGTCA
GTGCCCGCCCAATAGGCGGGGAGAGGAGTCAGCCCTCGGAGAAATGGAGA
AACACGGTACTGTATTGCGTACTGATTGTTCACTTGAAGCCAGTAAGTGC
ACTAGACCGTGACCAACGCATGCGTGGGTTGATAAAGCCACGCTCAGGAG
CGGTGGTTTTAGGCCAAGGCTGCCGTCTACTGCTGTGCTACCTCTACTGT
AGTACAGCAGCAGTACTCCTCGTACGTACATACTCGTATACGAAGTATAT
ATGTACTCATGTGGTGCTTGCCGTAGTCCCGAGACCATTGACCATGCGCC
ACATAGCAAGTCAAAGTGAGTGCCTATTTACGAGTACAACGTTTGTTGCC
AACGGCGCGACGAGCACCACCGCCCACGCCAGTGCCCAAGGACACATCAG
CCAGACTCAGAACTCAGCCCGCGCCGGAGCGTTCCCAGTTGGGCGACTGG
AGCTCCTCGCACGAATGATATGACCACGTGCCCCGGCCACTTGGCTTCAG
GCAGCAATCTGCGGCCTCCCCCGCCCGCTCAGGTGCTGCCGGCTTCGAAA
TGTGTACTGTGCCTCGAAGTAAAGAAGACCAACACATCCCACTTCCGCCC
CTTTCCCCCTGCTTCTCCTCCCCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCCCCCCCGCCCCTCCTCCTCCTT
CCCACCTTCCTGTCACCAGGTGCTGGAGGCCAAACTCCCGGGCCTCTCAT
GTGCCCTCCGCGCCCCCACCTACACCACGGCCAGCGCCGGGGCCGGGGTG
GGCGGGGCCGTGGTCCAGGGCCTACACCACAAAACGGGCCCACGGTCGGC
CAGTGCAAGCACCGCTGAAAGTGCCGCCGCCATCACAGGGCATGGCCACT
CCTCCCCCGTGGTGTCCCTTTTGCAGATACCGCGAGCGGTGGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:2933783..2936726-

>mRNA_S-ischiensis_contig11.2322.1 ID=mRNA_S-ischiensis_contig11.2322.1|Name=mRNA_S-ischiensis_contig11.2322.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1122bp|location=Sequence derived from alignment at S-ischiensis_contig11:2933783..2936726- (Schizocladia ischiensis KU_0333)
GCGTCGTCGCCGGGCCTGCGGGCGCTGATCGGTGGGGCGGCTGTGGTGGG
CGTGGCGTTCAGCCGGGTCAAGAGCTCACTGGCGGCGACGGCGCATGCCC
GGGAGCCGGGGGCGGCCCCCCTGGAGGGCAGCGACGTGGTGTGTGTGTGG
GATGTAGCTGCGGCGGAGGCGTCGTCGCCGGGCCTGCGGGCGCTGATCGG
TGGGGCGGCTGTGGTGGGCGTGGCGTTCAGCCGGGTCAAGAGCTCACTGG
CGGCGACGGCGCATGCCCGGGAGCCGGGGGCGGCCCCCCTGGAGGGCAGC
GACGTGGTGTGTGTGTGGGATGTAGCTGCGGCGGAGCCAAGAAGCCCCCC
CGCCTGTACCAACATCCTCGTGGGGGAGGGGCGCTTCACGTGCCTGGTGC
TGCCTGCGGCGGCGGGTCAGGCGCACCTTGTGATGGCCGCCACTGCGGAG
GGCTGTGTGCTTCTCTGGGACCTCAGGGAGCCCCGATCCATGCATGCACG
CCAGCCAAGAAGCCCCCCCGCCTGTACCAACATCCTCGTGGGGGAGGGGC
GCTTCACGTGCCTGGTGCTGCCTGCGGCGGCGGGTCAGGCGCACCTTGTG
ATGGCCGCCACTGCGGAGGGCTGTGTGCTTCTCTGGGACCTCAGGGAGCC
CCGATCCATGCATGCACGCCAGGTGCTGGAGGCCAAACTCCCGGGCCTCT
CATGTGCCCTCCGCGCCCCCACCTACACCACGGCCAGCGCCGGGGCCGGG
GTGGGCGGGGCCGTGGTCCAGGGCCTACACCACAAAACGGGCCCACGGTC
GGCCAGTGCAAGCACCGCTGAAAGTGCCGCCGCCATCACAGGGCATGGCC
ACTCCTCCCCCGTGGTGTCCCTTTTGCAGATACCGCGAGCGGTGGGGGTG
CTGGAGGCCAAACTCCCGGGCCTCTCATGTGCCCTCCGCGCCCCCACCTA
CACCACGGCCAGCGCCGGGGCCGGGGTGGGCGGGGCCGTGGTCCAGGGCC
TACACCACAAAACGGGCCCACGGTCGGCCAGTGCAAGCACCGCTGAAAGT
GCCGCCGCCATCACAGGGCATGGCCACTCCTCCCCCGTGGTGTCCCTTTT
GCAGATACCGCGAGCGGTGGGG
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