mRNA_S-ischiensis_contig11.2300.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2300.1
Unique NamemRNA_S-ischiensis_contig11.2300.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig11.2300.1 vs. uniprot
Match: A0A7S4I1T7_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I1T7_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 4.730e-6
Identity = 24/40 (60.00%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:  730 RWSREENEALLGGMSVYGRDWDKIQAGIPTRTPSQIRAHA 849
            RW+REE+EA L G+ V+GR+W K+   IPTRT +QIR+HA
Sbjct:  486 RWTREEHEAFLNGLKVFGREWKKVATRIPTRTSAQIRSHA 525
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BLAST of mRNA_S-ischiensis_contig11.2300.1 vs. uniprot
Match: A0A7S3Q6I0_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q6I0_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 8.550e-6
Identity = 23/40 (57.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:  730 RWSREENEALLGGMSVYGRDWDKIQAGIPTRTPSQIRAHA 849
            RWSR+E+EA L G+ ++GR+W K+   IPTRT +QIR+HA
Sbjct:  563 RWSRDEHEAFLDGLKIFGREWKKVATKIPTRTSAQIRSHA 602
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BLAST of mRNA_S-ischiensis_contig11.2300.1 vs. uniprot
Match: W7TGG4_9STRA (Myb-like dna-binding shaqkyf class family protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGG4_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 2.070e-5
Identity = 21/40 (52.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:  730 RWSREENEALLGGMSVYGRDWDKIQAGIPTRTPSQIRAHA 849
            RW+++E+ A L G+ VYGRDW+KIQ  + TR+  Q+R+HA
Sbjct:    8 RWTKQEHLAFLRGLRVYGRDWNKIQRLVGTRSQPQVRSHA 47
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BLAST of mRNA_S-ischiensis_contig11.2300.1 vs. uniprot
Match: B8C5L1_THAPS (MYB DNA binding protein/ transcription factor-like protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C5L1_THAPS)

HSP 1 Score: 51.2 bits (121), Expect = 3.310e-5
Identity = 20/40 (50.00%), Postives = 28/40 (70.00%), Query Frame = 1 
Query:  730 RWSREENEALLGGMSVYGRDWDKIQAGIPTRTPSQIRAHA 849
            RW++EE+EA L  + VYG++W K+ A + TRT  Q R HA
Sbjct:    1 RWTKEEHEAFLSALQVYGKEWKKVAARVKTRTVVQTRTHA 40
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BLAST of mRNA_S-ischiensis_contig11.2300.1 vs. uniprot
Match: A0A1E7FKC4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FKC4_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 3.310e-5
Identity = 19/40 (47.50%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:  730 RWSREENEALLGGMSVYGRDWDKIQAGIPTRTPSQIRAHA 849
            RW++EE++A L G+ +YG++W K+ A + TRT  Q R HA
Sbjct:    1 RWTKEEHDAFLSGLKMYGKEWKKVAAKVKTRTVVQTRTHA 40
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BLAST of mRNA_S-ischiensis_contig11.2300.1 vs. uniprot
Match: A0A077ZV65_STYLE (Myb-like dna-binding shaqkyf class family protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A077ZV65_STYLE)

HSP 1 Score: 57.0 bits (136), Expect = 4.550e-5
Identity = 23/40 (57.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:  730 RWSREENEALLGGMSVYGRDWDKIQAGIPTRTPSQIRAHA 849
            RWSREE+E  +  MS+YGRDW +++A I TR+ +QIR+HA
Sbjct:  195 RWSREEHEKFIEAMSIYGRDWKRVEAHIGTRSGAQIRSHA 234
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2300.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A7S4I1T7_9STRA4.730e-660.00Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S3Q6I0_9STRA8.550e-657.50Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
W7TGG4_9STRA2.070e-552.50Myb-like dna-binding shaqkyf class family protein ... [more]
B8C5L1_THAPS3.310e-550.00MYB DNA binding protein/ transcription factor-like... [more]
A0A1E7FKC4_9STRA3.310e-547.50Uncharacterized protein (Fragment) n=1 Tax=Fragila... [more]
A0A077ZV65_STYLE4.550e-557.50Myb-like dna-binding shaqkyf class family protein ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:2688801..2689991 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.2
Seed ortholog evalue3.2e-07
Seed eggNOG ortholog112098.XP_008610748.1
EggNOG free text desc.ubiquitin modification-dependent histone binding
EggNOG OGsKOG0724@1,KOG0724@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1191
Cds size1191
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815584.765701-CDS-S-ischiensis_contig11:2688800..26899911622815584.765701-CDS-S-ischiensis_contig11:2688800..2689991Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2688801..2689991 +
1695739785.2058563-CDS-S-ischiensis_contig11:2688800..26899911695739785.2058563-CDS-S-ischiensis_contig11:2688800..2689991Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2688801..2689991 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2300.1prot_S-ischiensis_contig11.2300.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 2688801..2689991 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2300.1

>prot_S-ischiensis_contig11.2300.1 ID=prot_S-ischiensis_contig11.2300.1|Name=mRNA_S-ischiensis_contig11.2300.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=397bp
LRQANKDKRALQSIMETHQQQKWHPYQQFLVPAFASPFPGLVPYLGAGGQ
AWMSTTSTHPGSYYYANPMTVVSSAPRPAVPAAQTDFAVWSGMGKGVATL
GWVPGGYPTTHQIPTTETKLLVQAAAPSVAPAWPEASGNQGDGKGQEPGQ
GGDKGRRRGRNKRDGEFQGPGFLVPELEVSDSRQEACELTASPPRTAATV
PPASTPITIPISPAQVAPEAEGGTTAVEGFNLDRQPPAKKKRERWSREEN
EALLGGMSVYGRDWDKIQAGIPTRTPSQIRAHAYGHPHAYAHMCKAVPPG
GAATDSPHTEGTAGAAVAAAAAEPATAEPAMTGKAQGKAEARAHAYGEAC
ADLWKAAESAGATTDGPRTEGTAGAVAVAAAAAAMAEPAMTGKAQGK
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mRNA from alignment at S-ischiensis_contig11:2688801..2689991+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2300.1 ID=mRNA_S-ischiensis_contig11.2300.1|Name=mRNA_S-ischiensis_contig11.2300.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1191bp|location=Sequence derived from alignment at S-ischiensis_contig11:2688801..2689991+ (Schizocladia ischiensis KU_0333)
CTGAGACAGGCGAACAAAGACAAAAGAGCCCTGCAGAGCATAATGGAAAC
CCACCAGCAGCAAAAATGGCATCCATACCAGCAGTTCTTGGTCCCAGCTT
TTGCCTCCCCGTTCCCCGGCCTCGTGCCTTATCTCGGGGCGGGGGGGCAG
GCATGGATGTCTACAACAAGTACGCACCCGGGGTCTTACTACTACGCGAA
TCCCATGACGGTGGTATCATCAGCGCCGCGACCAGCTGTTCCCGCCGCGC
AGACCGACTTTGCGGTGTGGAGTGGCATGGGCAAGGGAGTGGCGACGCTG
GGTTGGGTGCCCGGGGGTTACCCCACAACACACCAGATTCCCACCACCGA
GACCAAGCTGCTCGTTCAAGCCGCCGCCCCTTCGGTCGCCCCTGCGTGGC
CGGAGGCGAGCGGTAACCAAGGCGACGGGAAGGGTCAGGAGCCCGGACAG
GGGGGTGACAAGGGCAGGCGCCGCGGGCGCAACAAGAGGGACGGGGAGTT
CCAAGGACCGGGCTTCCTTGTCCCGGAACTTGAGGTCTCAGACTCTCGCC
AGGAGGCTTGCGAGCTGACAGCTTCCCCGCCCAGGACGGCGGCGACGGTG
CCCCCGGCTTCTACGCCCATCACCATCCCCATCTCGCCGGCCCAGGTGGC
CCCGGAGGCAGAGGGCGGCACCACCGCCGTGGAGGGCTTCAACCTAGACC
GCCAGCCCCCGGCCAAGAAGAAACGGGAGCGGTGGAGCAGGGAGGAGAAC
GAGGCCCTGCTGGGCGGCATGAGCGTGTACGGGAGGGACTGGGACAAGAT
CCAGGCCGGCATCCCGACCCGCACGCCCAGCCAGATCCGCGCGCACGCCT
ACGGGCACCCGCATGCCTACGCGCACATGTGCAAAGCCGTGCCGCCTGGC
GGCGCCGCGACCGACAGCCCCCACACGGAGGGCACGGCCGGGGCGGCGGT
GGCGGCGGCGGCGGCAGAGCCGGCGACGGCGGAGCCGGCGATGACGGGGA
AGGCGCAGGGGAAGGCGGAGGCTCGCGCGCACGCCTATGGAGAAGCTTGT
GCGGACCTGTGGAAGGCCGCGGAGTCTGCCGGCGCTACGACTGACGGCCC
CCGCACGGAGGGCACGGCCGGGGCGGTGGCGGTAGCGGCGGCGGCGGCGG
CGATGGCGGAGCCGGCGATGACGGGGAAGGCGCAGGGGAAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:2688801..2689991+

>mRNA_S-ischiensis_contig11.2300.1 ID=mRNA_S-ischiensis_contig11.2300.1|Name=mRNA_S-ischiensis_contig11.2300.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2382bp|location=Sequence derived from alignment at S-ischiensis_contig11:2688801..2689991+ (Schizocladia ischiensis KU_0333)
CTGAGACAGGCGAACAAAGACAAAAGAGCCCTGCAGAGCATAATGGAAAC
CCACCAGCAGCAAAAATGGCATCCATACCAGCAGTTCTTGGTCCCAGCTT
TTGCCTCCCCGTTCCCCGGCCTCGTGCCTTATCTCGGGGCGGGGGGGCAG
GCATGGATGTCTACAACAAGTACGCACCCGGGGTCTTACTACTACGCGAA
TCCCATGACGGTGGTATCATCAGCGCCGCGACCAGCTGTTCCCGCCGCGC
AGACCGACTTTGCGGTGTGGAGTGGCATGGGCAAGGGAGTGGCGACGCTG
GGTTGGGTGCCCGGGGGTTACCCCACAACACACCAGATTCCCACCACCGA
GACCAAGCTGCTCGTTCAAGCCGCCGCCCCTTCGGTCGCCCCTGCGTGGC
CGGAGGCGAGCGGTAACCAAGGCGACGGGAAGGGTCAGGAGCCCGGACAG
GGGGGTGACAAGGGCAGGCGCCGCGGGCGCAACAAGAGGGACGGGGAGTT
CCAAGGACCGGGCTTCCTTGTCCCGGAACTTGAGGTCTCAGACTCTCGCC
AGGAGGCTTGCGAGCTGACAGCTTCCCCGCCCAGGACGGCGGCGACGGTG
CCCCCGGCTTCTACGCCCATCACCATCCCCATCTCGCCGGCCCAGGTGGC
CCCGGAGGCAGAGGGCGGCACCACCGCCGTGGAGGGCTTCAACCTAGACC
GCCAGCCCCCGGCCAAGAAGAAACGGGAGCGGTGGAGCAGGGAGGAGAAC
GAGGCCCTGCTGGGCGGCATGAGCGTGTACGGGAGGGACTGGGACAAGAT
CCAGGCCGGCATCCCGACCCGCACGCCCAGCCAGATCCGCGCGCACGCCT
ACGGGCACCCGCATGCCTACGCGCACATGTGCAAAGCCGTGCCGCCTGGC
GGCGCCGCGACCGACAGCCCCCACACGGAGGGCACGGCCGGGGCGGCGGT
GGCGGCGGCGGCGGCAGAGCCGGCGACGGCGGAGCCGGCGATGACGGGGA
AGGCGCAGGGGAAGGCGGAGGCTCGCGCGCACGCCTATGGAGAAGCTTGT
GCGGACCTGTGGAAGGCCGCGGAGTCTGCCGGCGCTACGACTGACGGCCC
CCGCACGGAGGGCACGGCCGGGGCGGTGGCGGTAGCGGCGGCGGCGGCGG
CGATGGCGGAGCCGGCGATGACGGGGAAGGCGCAGGGGAAGCTGAGACAG
GCGAACAAAGACAAAAGAGCCCTGCAGAGCATAATGGAAACCCACCAGCA
GCAAAAATGGCATCCATACCAGCAGTTCTTGGTCCCAGCTTTTGCCTCCC
CGTTCCCCGGCCTCGTGCCTTATCTCGGGGCGGGGGGGCAGGCATGGATG
TCTACAACAAGTACGCACCCGGGGTCTTACTACTACGCGAATCCCATGAC
GGTGGTATCATCAGCGCCGCGACCAGCTGTTCCCGCCGCGCAGACCGACT
TTGCGGTGTGGAGTGGCATGGGCAAGGGAGTGGCGACGCTGGGTTGGGTG
CCCGGGGGTTACCCCACAACACACCAGATTCCCACCACCGAGACCAAGCT
GCTCGTTCAAGCCGCCGCCCCTTCGGTCGCCCCTGCGTGGCCGGAGGCGA
GCGGTAACCAAGGCGACGGGAAGGGTCAGGAGCCCGGACAGGGGGGTGAC
AAGGGCAGGCGCCGCGGGCGCAACAAGAGGGACGGGGAGTTCCAAGGACC
GGGCTTCCTTGTCCCGGAACTTGAGGTCTCAGACTCTCGCCAGGAGGCTT
GCGAGCTGACAGCTTCCCCGCCCAGGACGGCGGCGACGGTGCCCCCGGCT
TCTACGCCCATCACCATCCCCATCTCGCCGGCCCAGGTGGCCCCGGAGGC
AGAGGGCGGCACCACCGCCGTGGAGGGCTTCAACCTAGACCGCCAGCCCC
CGGCCAAGAAGAAACGGGAGCGGTGGAGCAGGGAGGAGAACGAGGCCCTG
CTGGGCGGCATGAGCGTGTACGGGAGGGACTGGGACAAGATCCAGGCCGG
CATCCCGACCCGCACGCCCAGCCAGATCCGCGCGCACGCCTACGGGCACC
CGCATGCCTACGCGCACATGTGCAAAGCCGTGCCGCCTGGCGGCGCCGCG
ACCGACAGCCCCCACACGGAGGGCACGGCCGGGGCGGCGGTGGCGGCGGC
GGCGGCAGAGCCGGCGACGGCGGAGCCGGCGATGACGGGGAAGGCGCAGG
GGAAGGCGGAGGCTCGCGCGCACGCCTATGGAGAAGCTTGTGCGGACCTG
TGGAAGGCCGCGGAGTCTGCCGGCGCTACGACTGACGGCCCCCGCACGGA
GGGCACGGCCGGGGCGGTGGCGGTAGCGGCGGCGGCGGCGGCGATGGCGG
AGCCGGCGATGACGGGGAAGGCGCAGGGGAAG
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