mRNA_S-ischiensis_contig11.2291.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2291.1
Unique NamemRNA_S-ischiensis_contig11.2291.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:2568809..2569576 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size305
Cds size303
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815579.7566335-CDS-S-ischiensis_contig11:2568808..25690031622815579.7566335-CDS-S-ischiensis_contig11:2568808..2569003Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2568809..2569003 +
1695739782.7728446-CDS-S-ischiensis_contig11:2568808..25690031695739782.7728446-CDS-S-ischiensis_contig11:2568808..2569003Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2568809..2569003 +
1622815579.7681623-CDS-S-ischiensis_contig11:2569468..25695761622815579.7681623-CDS-S-ischiensis_contig11:2569468..2569576Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2569469..2569576 +
1695739782.7824984-CDS-S-ischiensis_contig11:2569468..25695761695739782.7824984-CDS-S-ischiensis_contig11:2569468..2569576Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2569469..2569576 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2291.1prot_S-ischiensis_contig11.2291.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 2568809..2569576 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2291.1

>prot_S-ischiensis_contig11.2291.1 ID=prot_S-ischiensis_contig11.2291.1|Name=mRNA_S-ischiensis_contig11.2291.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=101bp
MEPSGPSATAAATAAAAAGSFMSLYGDCVLANSDSDAVLHAPPPTGSGGA
AAGTQDGEPFVLCTQLCAAGPSARRSIVHLTGSTGEHSSSSSSSSSSLAY
P
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mRNA from alignment at S-ischiensis_contig11:2568809..2569576+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2291.1 ID=mRNA_S-ischiensis_contig11.2291.1|Name=mRNA_S-ischiensis_contig11.2291.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=768bp|location=Sequence derived from alignment at S-ischiensis_contig11:2568809..2569576+ (Schizocladia ischiensis KU_0333)
ATGGAGCCTAGTGGCCCCTCCGCCACCGCTGCCGCCACCGCTGCCGCCGC
CGCCGGGTCGTTCATGTCCTTGTATGGGGACTGCGTTCTCGCCAACAGCG
ACTCGGACGCCGTGCTGCACGCCCCCCCGCCCACGGGGTCAGGGGGGGCG
GCGGCAGGGACCCAGGATGGGGAGCCCTTTGTGCTCTGCACACAGGTGAG
CCCCCGGGGGTGGTGATGGGTGGCGGTTGGTTTGAGCGACTAAGTCATGT
CGGCCTGGCTGCAAACTACGGCGTTTAAGACCGGCGGCACAAACTACGGC
GTTTTAAAAAGGGTCCGGGTCGCGGCCGACGATGCCGTCTCACTACGTAG
CGCGGGCGAGAGGTGGCCCCCTTTGGCTACGCCCGTGTCGTGCGTGCCTC
CAGGGCATGTGTCCGCCAACGGTGGAGGCCGCTATTCTGCACCTGCGAAC
CCCTTCCTGTCCTGTCCTCCCTCCCTCTATCCCGCTCGTTTCTGAGATCC
GCCCGCCCCTTGCCCACATCTCGTTGCCTCCTTGCGATAGCGTGACTAAC
TCGCCCCCCCTCCTCTTGTCCGCGGCCTCTGCTCGCCTCTGCTCCCTCGG
GCACGACCAACCCACTCACCCGCCTGTGGGACGCGTGGCCAATGGCCACC
CCACGCCCAGCTGTGCGCCGCGGGCCCTTCCGCTCGTCGAAGCATCGTCC
ACCTAACGGGCTCCACAGGCGAACACTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTTGGCATATCCT
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:2568809..2569576+

>mRNA_S-ischiensis_contig11.2291.1 ID=mRNA_S-ischiensis_contig11.2291.1|Name=mRNA_S-ischiensis_contig11.2291.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=606bp|location=Sequence derived from alignment at S-ischiensis_contig11:2568809..2569576+ (Schizocladia ischiensis KU_0333)
ATGGAGCCTAGTGGCCCCTCCGCCACCGCTGCCGCCACCGCTGCCGCCGC
CGCCGGGTCGTTCATGTCCTTGTATGGGGACTGCGTTCTCGCCAACAGCG
ACTCGGACGCCGTGCTGCACGCCCCCCCGCCCACGGGGTCAGGGGGGGCG
GCGGCAGGGACCCAGGATGGGGAGCCCTTTGTGCTCTGCACACAGATGGA
GCCTAGTGGCCCCTCCGCCACCGCTGCCGCCACCGCTGCCGCCGCCGCCG
GGTCGTTCATGTCCTTGTATGGGGACTGCGTTCTCGCCAACAGCGACTCG
GACGCCGTGCTGCACGCCCCCCCGCCCACGGGGTCAGGGGGGGCGGCGGC
AGGGACCCAGGATGGGGAGCCCTTTGTGCTCTGCACACAGCTGTGCGCCG
CGGGCCCTTCCGCTCGTCGAAGCATCGTCCACCTAACGGGCTCCACAGGC
GAACACTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTGGCATATCCTCT
GTGCGCCGCGGGCCCTTCCGCTCGTCGAAGCATCGTCCACCTAACGGGCT
CCACAGGCGAACACTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTGGCA
TATCCT
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