mRNA_S-ischiensis_contig11.2283.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2283.1
Unique NamemRNA_S-ischiensis_contig11.2283.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig11.2283.1 vs. uniprot
Match: A0A6H5L3U7_9PHAE (GT4 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L3U7_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 3.540e-19
Identity = 47/93 (50.54%), Postives = 64/93 (68.82%), Query Frame = -1 
Query:   25 LGPLREHLRGSDVMVMSNGAHGGDGYLLELARLAGVPSRIVNLGALA--HMSARYTGATLFAAPSHFMSHDAQVLRHLAGREVVVCHPMMDWA 297
            L  L  HL   DV+VMSNG    D Y+L+ ARLAGV +R+VNLGA+A  +MS R++GAT    PSH+++H+  V+R+  G  + VCHP+MD A
Sbjct:  457 LSDLYHHLVKFDVLVMSNGGKDTDAYVLQTARLAGVHTRMVNLGAIAGGYMSPRFSGATSIVGPSHYVAHNPTVIRNAGGLPIKVCHPVMDAA 549
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BLAST of mRNA_S-ischiensis_contig11.2283.1 vs. uniprot
Match: A0A6H5JXS0_9PHAE (GT4 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXS0_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 7.540e-15
Identity = 44/92 (47.83%), Postives = 56/92 (60.87%), Query Frame = -1 
Query:   22 LREHLRGSDVMVMSNGAHGGDGYLLELARLAGVPSRIVNLGALA---HMSARYTGATLFAAPSHFMSHDAQVLRHLAGREVVVCHPMMDWAG 288
            L  HL   DV+VMSNG    D +LL+ ARLAGV +R+V LGA A   H S  + GAT    PSH+++H+  V R+  G  V VC P+MD  G
Sbjct:  581 LHRHLSAFDVLVMSNGGGDNDAFLLQAARLAGVSTRVVLLGAGAISSHASPLFGGATKLIGPSHYVAHNPTVSRNEQGLSVKVCQPVMDAVG 672
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L3U7_9PHAE3.540e-1950.54GT4 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A6H5JXS0_9PHAE7.540e-1547.83GT4 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:2521994..2522296 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size305
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815584.4911828-CDS-S-ischiensis_contig11:2521993..25222961622815584.4911828-CDS-S-ischiensis_contig11:2521993..2522296Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2521994..2522296 +
1695739785.147264-CDS-S-ischiensis_contig11:2521993..25222961695739785.147264-CDS-S-ischiensis_contig11:2521993..2522296Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2521994..2522296 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2283.1prot_S-ischiensis_contig11.2283.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 2521994..2522296 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2283.1

>prot_S-ischiensis_contig11.2283.1 ID=prot_S-ischiensis_contig11.2283.1|Name=mRNA_S-ischiensis_contig11.2283.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=101bp
ATDIPARAGPVHHGVADHHLPASQVAQHLRVVRHEMGRGGEQSRARVPGG
HVCQRSQVHDPRRHSGQPGELQQVAVPAVRPVRHDHDVGAPQVLAQGPQP
L
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mRNA from alignment at S-ischiensis_contig11:2521994..2522296+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2283.1 ID=mRNA_S-ischiensis_contig11.2283.1|Name=mRNA_S-ischiensis_contig11.2283.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=303bp|location=Sequence derived from alignment at S-ischiensis_contig11:2521994..2522296+ (Schizocladia ischiensis KU_0333)
GCCACTGACATCCCCGCTCGCGCCGGCCCAGTCCATCATGGGGTGGCAGA
CCACCACCTCCCTGCCAGCCAGGTGGCGCAGCACCTGCGCGTCGTGCGAC
ATGAAATGGGACGGGGCGGCGAACAGAGTCGCGCCCGTGTACCGGGCGGA
CATGTGTGCCAGCGCTCCCAGGTTCACGATCCGCGACGGCACTCCGGCCA
GCCGGGCGAGCTCCAGCAGGTAGCCGTCCCCGCCGTGCGCCCCGTTAGAC
ATGACCATGACGTCGGAGCCCCGCAGGTGCTCGCGCAGGGGCCCCAGCCC
CTC
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:2521994..2522296+

>mRNA_S-ischiensis_contig11.2283.1 ID=mRNA_S-ischiensis_contig11.2283.1|Name=mRNA_S-ischiensis_contig11.2283.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=606bp|location=Sequence derived from alignment at S-ischiensis_contig11:2521994..2522296+ (Schizocladia ischiensis KU_0333)
GCCACTGACATCCCCGCTCGCGCCGGCCCAGTCCATCATGGGGTGGCAGA
CCACCACCTCCCTGCCAGCCAGGTGGCGCAGCACCTGCGCGTCGTGCGAC
ATGAAATGGGACGGGGCGGCGAACAGAGTCGCGCCCGTGTACCGGGCGGA
CATGTGTGCCAGCGCTCCCAGGTTCACGATCCGCGACGGCACTCCGGCCA
GCCGGGCGAGCTCCAGCAGGTAGCCGTCCCCGCCGTGCGCCCCGTTAGAC
ATGACCATGACGTCGGAGCCCCGCAGGTGCTCGCGCAGGGGCCCCAGCCC
CTCGCCACTGACATCCCCGCTCGCGCCGGCCCAGTCCATCATGGGGTGGC
AGACCACCACCTCCCTGCCAGCCAGGTGGCGCAGCACCTGCGCGTCGTGC
GACATGAAATGGGACGGGGCGGCGAACAGAGTCGCGCCCGTGTACCGGGC
GGACATGTGTGCCAGCGCTCCCAGGTTCACGATCCGCGACGGCACTCCGG
CCAGCCGGGCGAGCTCCAGCAGGTAGCCGTCCCCGCCGTGCGCCCCGTTA
GACATGACCATGACGTCGGAGCCCCGCAGGTGCTCGCGCAGGGGCCCCAG
CCCCTC
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