mRNA_S-ischiensis_contig11.2270.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2270.1
Unique NamemRNA_S-ischiensis_contig11.2270.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig11.2270.1 vs. uniprot
Match: D8LJ58_ECTSI (ER membrane protein complex subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ58_ECTSI)

HSP 1 Score: 296 bits (757), Expect = 1.500e-97
Identity = 149/244 (61.07%), Postives = 185/244 (75.82%), Query Frame = 2 
Query:   17 MPVAELAKLTKDAAGGRFAPARDLLRLLRKEKVRRPDLVLAHGPPLLGYHRRLGHELWVVYEQVFTAAVDVPNPALADKCLAALQRQFPGSERVRRLEGMRYEAAGQYADADKLYASMLEKNPANALVAKRKVAVQMAQGKTSEAIKALNAYLADFGGDPEGWLQLAKLHLDAANYELAAFCYEELVLINPSDPLLHCRLAEIYYTMGGPEGVMRARKHFSQSADLRRAGNARALHGLCAACAT 748
            M + +L +L ++A+GG+ +P RDLLR LRKEK+RRPDL L +G  LL Y R LG ELWV++EQ+ TAA+D  +   A + L  L R+FPGS+RVRRLEGMR EA G +A A  +Y  M+E NPAN+L  KR+VAV +A+G T+ A+KALN YLA+F  D E WLQLAKLH+ A NY  AAFCYEELVL+ PSD ++HCRL E+YYTMGG E +MRARKHFSQS DL +AGNAR LHGLC  CA+
Sbjct:    1 MSLKKLPELCREASGGKLSPLRDLLRFLRKEKIRRPDLCLQYGKQLLTYGRSLGDELWVIHEQMVTAALDSGDVPTAHEHLQVLTRKFPGSQRVRRLEGMRCEAEGSFAAAAAIYEEMVEANPANSLARKRQVAVLIAKGDTAGAVKALNGYLAEFAADGEAWLQLAKLHIGALNYAAAAFCYEELVLVAPSDHVVHCRLGEVYYTMGGAENLMRARKHFSQSVDLLKAGNARGLHGLCQTCAS 244
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BLAST of mRNA_S-ischiensis_contig11.2270.1 vs. uniprot
Match: A0A6H5KPY1_9PHAE (ER membrane protein complex subunit 2 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY1_9PHAE)

HSP 1 Score: 246 bits (628), Expect = 5.680e-78
Identity = 123/209 (58.85%), Postives = 157/209 (75.12%), Query Frame = 2 
Query:   17 MPVAELAKLTKDAAGGRFAPARDLLRLLRKEKVRRPDLVLAHGPPLLGYHRRLGHELWVVYEQVFTAAVDVPNPALADKCLAALQRQFPGSERVRRLEGMRYEAAGQYADADKLYASMLEKNPANALVAKRKVAVQMAQGKTSEAIKALNAYLADFGGDPEGWLQLAKLHLDAANYELAAFCYEELVLINPSDPLLHCRLAEIYYTMGG 643
            M + +L +L ++A+GG+ +P RDLLR LRKE++RRPDL L +G  LL Y R LG ELWV++EQ+ TAA+D  +   A + L  L R+FPGS+RVRRLEGMR EA G +A A  +Y  M+E NPAN+L  KR+VAV +A+G T+ A+KALN YLA+F  D E WLQLAKLH+ A NY  AAFCYEELVL+ PSD ++HCRL E+YYTMGG
Sbjct:    1 MSLKKLPELCREASGGKLSPLRDLLRFLRKERIRRPDLCLQYGKQLLTYGRSLGDELWVIHEQMVTAALDSGDVPTAHEHLQVLTRKFPGSQRVRRLEGMRCEAEGSFAAAAAIYEEMVEANPANSLARKRQVAVLIAKGDTAGAVKALNGYLAEFAADGEAWLQLAKLHIGALNYAAAAFCYEELVLVAPSDHVVHCRLGEVYYTMGG 209
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BLAST of mRNA_S-ischiensis_contig11.2270.1 vs. uniprot
Match: A0A7S2CCR7_9STRA (ER membrane protein complex subunit 2 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CCR7_9STRA)

HSP 1 Score: 227 bits (579), Expect = 4.560e-70
Identity = 127/254 (50.00%), Postives = 163/254 (64.17%), Query Frame = 2 
Query:   77 ARDLLRLLRKEKVRRPDLVLAHGPPLLGYHRRLGHELWVVYEQVFTAAVDVPNPALADKCLAALQRQFPGSERVRRLEGMRYEAAGQYADADKLYASMLEKNPANALVAKRKVAVQMAQGKTSEAIKALNAYLADFGGDPEGWLQLAKLHLDAANYELAAFCYEELVLINPSDPLLHCRLAEIYYTMGGPEGVMRARKHFSQSADLRRAGNARALHGLCAACATLASSKAAAKLLRGKEEEVNAALHAFAAGEL 838
            A+ LL+ +R  K+R  ++V+ HG  L+     LG E W V EQVF AA+DV   +LA  CL AL  QFP S RV+RL G+  EA G+YA+A+++Y  MLE+NPAN LV KR+V V  AQ K   AIK LN YL  F  D   W +LA L+L  + YE AAFCYEELVL NP+  + HCRL EIYYT+GG   + +ARK+F+QS +L++  NARALHGL A C    + K      R    +V AALH +A+ EL
Sbjct:   26 AQALLKHIRMAKMRESEMVVRHGSKLVERQAALGDEYWSVLEQVFLAALDVDERSLAQTCLQALNEQFPESTRVKRLVGISREAMGKYAEAEEIYKGMLEENPANQLVLKRQVCVLKAQNKIPAAIKCLNNYLKQFQADANAWQELADLYLSVSKYEAAAFCYEELVLANPTSHINHCRLGEIYYTLGGKH-IAKARKYFAQSLELKKTNNARALHGLAACCHANTTFKD-----RNVRADVTAALHEYASEEL 273
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BLAST of mRNA_S-ischiensis_contig11.2270.1 vs. uniprot
Match: A0A0N7L4P2_PLAHL (ER membrane protein complex subunit 2 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L4P2_PLAHL)

HSP 1 Score: 213 bits (543), Expect = 1.010e-64
Identity = 115/228 (50.44%), Postives = 151/228 (66.23%), Query Frame = 2 
Query:   83 DLLRLLRKEKVRRPDLVLAHGPPLLG-YHRRLGHELWVVYEQVFTAAVDVPNPALADKCLAALQRQFPGSERVRRLEGMRYEAAGQYADADKLYASMLEKNPANALVAKRKVAVQMAQGKTSEAIKALNAYLADFGGDPEGWLQLAKLHLDAANYELAAFCYEELVLINPSDPLLHCRLAEIYYTMGGPEGVMRARKHFSQSADLRRAGNARALHGLCAACATLASSK 763
            DLL  +RKEK+R+P +V + G  L+  +HR LG ELW VYEQ F AA+D+ +  LA  CL ALQ +FPGS RV RLEGM+ E  G++A A  LYA +LE NPANALV KRK+A+  AQ KT++ I ALN +L  FG D   W +L + +L    Y  AAFCYEELVL+NP D + H RLA+IY T+GG E ++ ARKH++ S +L +  N RA   L      +A+ +
Sbjct:   22 DLLYYIRKEKLRKPQVVASIGKLLVAEHHRGLGDELWNVYEQTFIAALDLHDDELATTCLQALQTKFPGSSRVARLEGMQLEQRGEFAKALALYAELLEANPANALVLKRKIAIYKAQKKTTDVIMALNEFLRSFGTDLAAWTELGETYLSLGAYRYAAFCYEELVLLNPMDAIAHSRLADIYSTIGGLEYLLTARKHYAHSIELNKKQNLRAFLALLVCTKAIATQR 249
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BLAST of mRNA_S-ischiensis_contig11.2270.1 vs. uniprot
Match: A0A7S2GPJ3_9STRA (ER membrane protein complex subunit 2 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GPJ3_9STRA)

HSP 1 Score: 211 bits (538), Expect = 3.740e-64
Identity = 118/263 (44.87%), Postives = 167/263 (63.50%), Query Frame = 2 
Query:   53 AAGGRFAPARDLLRLLRKEKVRRPDLVLAHGPPLLG-YHRRLGHELWVVYEQVFTAAVDVPNPALADKCLAALQRQFPGSERVRRLEGMRYEAAGQYADADKLYASMLEKNPANALVAKRKVAVQMAQGKTSEAIKALNAYLADFGGDPEGWLQLAKLHLDAANYELAAFCYEELVLINPSDPLLHCRLAEIYYTMGGPEGVMRARKHFSQSADLRRAGNARALHGLCAACATLASSKAAAKLLRGKEEEVNAALHAFAAGEL 838
            A  GR AP  +L + LR  K+R+   V+  G  +L  Y   +G ELW V EQV  AA+D+ +  L+ +CL  LQ +FP S RV+RLEGM+ EA G++  A ++Y  MLE+NPAN L  KR+V V  AQG   +AI+ LN YL+ FG D   W +L ++++  + YE A FCYEEL+L NP++ + HCRL E+YYT+G P+ +  ARK+F+QS DL++ GN RA+HGL + C  + +S       R    +V +AL  +A GEL
Sbjct:    4 AETGRPAPILNLFKFLRINKLRQTRDVVRWGRVVLEKYRSHMGDELWTVLEQVMIAALDLHDTELSKECLKELQTKFPESARVKRLEGMQSEALGEWGAAKEIYKQMLEENPANTLAMKRQVCVLKAQGNYPQAIRQLNEYLSTFGADTSAWQELGEMYMAISKYEAAVFCYEELILSNPTNHIHHCRLGELYYTLG-PKHLRTARKYFAQSLDLKKDGNLRAMHGLASCCRAIMASPD-----RKTRADVTSALDDYAVGEL 260
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BLAST of mRNA_S-ischiensis_contig11.2270.1 vs. uniprot
Match: A0A7S2S8F2_9STRA (ER membrane protein complex subunit 2 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S8F2_9STRA)

HSP 1 Score: 212 bits (539), Expect = 6.280e-64
Identity = 124/254 (48.82%), Postives = 155/254 (61.02%), Query Frame = 2 
Query:   86 LLRLLRKEKVRRPDLVLAHGPPLL--GYHRRLGHELWVVYEQVFTAAVDVPNPALADKCLAALQRQFPGSERVRRLEGMRYEAAGQYADADKLYASMLEKNPANALVAKRKVAVQMAQGKTSEAIKALNAYLADFGGDPEGWLQLAKLHLDAANYELAAFCYEELVLINPSDPLLHCRLAEIYYTMGGPEGVMRARKHFSQSADLRRAGNARALHGLCAACATLASSKAAAKLLRGKEEEVNAALHAFAAGELR 841
            LL+ +R  K+R   LV+ +G PL+  G    LG E W V EQVF AA+D  +  LAD CL  L  QFP S RV+RL GM+ EA   Y  A ++Y  +LE NPAN L  KRK+ +  A  K   AI  LN Y+  F  D   W +LA L+L  A Y+ AAFCYEEL+L NP   LLHCRL EIYYT+G  E +  ARKHF +S +L+R  N RALHGL + C+ LAS +      R  +  VNAAL A+AA +LR
Sbjct:   29 LLKYIRTHKLRESKLVVQYGKPLVQGGGGSALGDEKWTVLEQVFIAALDTKDMDLADACLRGLHTQFPDSARVKRLVGMKSEAERDYTAALQIYDELLEANPANQLAMKRKICILRADNKVQSAIHELNEYIKRFQADASAWQELADLYLSVAKYDSAAFCYEELILHNPMSHLLHCRLGEIYYTLG-KENLTVARKHFCKSLELKRKDNPRALHGLRSCCSALASGEE-----RLADPSVNAALSAYAARDLR 276
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BLAST of mRNA_S-ischiensis_contig11.2270.1 vs. uniprot
Match: W2QL82_PHYPN (ER membrane protein complex subunit 2 n=9 Tax=Phytophthora TaxID=4783 RepID=W2QL82_PHYPN)

HSP 1 Score: 208 bits (529), Expect = 1.370e-62
Identity = 113/228 (49.56%), Postives = 148/228 (64.91%), Query Frame = 2 
Query:   83 DLLRLLRKEKVRRPDLVLAHGPPLLGYHR-RLGHELWVVYEQVFTAAVDVPNPALADKCLAALQRQFPGSERVRRLEGMRYEAAGQYADADKLYASMLEKNPANALVAKRKVAVQMAQGKTSEAIKALNAYLADFGGDPEGWLQLAKLHLDAANYELAAFCYEELVLINPSDPLLHCRLAEIYYTMGGPEGVMRARKHFSQSADLRRAGNARALHGLCAACATLASSK 763
            +LL  +RKEK+R P  V + G  L+  H   LG ELW VYEQ F AA+D+ +  LA+ CL ALQ +FPGS RV RLEGM+ E  G++A A  LYA +LE NPANALV KRK+AV  AQ KT+E + ALN +L  FG D   W +L + +L    Y  AAFCYEELVL+NP D + H RLA+IY T+GG + ++ ARKH++ S +L +  N RA   L      +A+ +
Sbjct:   24 ELLHYVRKEKLREPRAVASIGKLLVTKHSWGLGDELWGVYEQTFVAALDLHDDELAETCLKALQTKFPGSSRVARLEGMQLEQRGEFAKALVLYAELLEANPANALVLKRKIAVLKAQKKTAEVVTALNEFLKSFGTDQAAWTELGETYLSMGAYRYAAFCYEELVLLNPMDAISHSRLADIYSTIGGLDNLLTARKHYAHSIELNKKQNLRAYFSLVTCTKAIAAQR 251
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BLAST of mRNA_S-ischiensis_contig11.2270.1 vs. uniprot
Match: A0A7S2UWF6_9STRA (ER membrane protein complex subunit 2 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWF6_9STRA)

HSP 1 Score: 205 bits (522), Expect = 1.110e-61
Identity = 121/259 (46.72%), Postives = 160/259 (61.78%), Query Frame = 2 
Query:  140 HGPPLLGYHRRLGHELWVVYEQVFTAAVDVPNPALADKCLAALQRQFPGSERVRRLEGMRYEAAGQYADADKLYASMLEKNPANALVAKRKVAVQMAQGKTSEAIKALNAYLADFGGDPEGWLQLAKLHLDAANYELAAFCYEELVLINPSDPLLHCRLAEIYYTMGGP------EGV---------------MRARKHFSQSADLRRAGNARALHGLCAACATLASSKA----AAKLLRGKEEEVNAALHAFAAGELR 841
            +G  L+  +  +G E W V EQVF AA+D+ N  +A  C+ AL+ QFP S RV+RL G+++EA G+++ A+ LY +ML + P N LV KR VA Q+AQGK + AI+ALNAYL DF  D   W QL  LH   +NYE AAFCYEELVL  PS+ L H RLAE+YYT+G        EGV               + ARKHFS++ +L+R+ N RAL GL  ACA L+  K+    A+      + ++N ALH  AAGEL+
Sbjct:    2 YGVDLIQDNAGIGDERWTVMEQVFQAALDLNNNDIAQFCIKALKVQFPSSNRVQRLVGLQHEAKGEFSAAESLYKNMLAETPTNTLVFKRLVACQVAQGKKAGAIRALNAYLNDFPADAVAWQQLGDLHCAVSNYEAAAFCYEELVLTQPSNCLFHLRLAELYYTLGSVGSAPALEGVSGXXXXXXSAQVQQLVLARKHFSRALELQRSNNPRALMGLAMACAALSGGKSTKSTASSSSAASDADLNGALHQMAAGELK 260
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BLAST of mRNA_S-ischiensis_contig11.2270.1 vs. uniprot
Match: A0A067CNU6_SAPPC (ER membrane protein complex subunit 2 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CNU6_SAPPC)

HSP 1 Score: 205 bits (522), Expect = 1.410e-61
Identity = 126/269 (46.84%), Postives = 167/269 (62.08%), Query Frame = 2 
Query:   35 AKLTKDAAGGRFAPARDLLRLLRKEKVRRPDLVLAHGPPLLGYHRRLGHELWVVYEQVFTAAVDVPNPALADKCLAALQRQFPGSERVRRLEGMRYEAAGQYADADKLYASMLEKNPANALVAKRKVAVQMAQGKTSEAIKALNAYLADFGGDPEGWLQLAKLHLDAANYELAAFCYEELVLINPSDPLLHCRLAEIYYTMGGPEGVMRARKHFSQSADLRRAGNARALHGLCAACATLASSKAAAKLLRGKEEEVNAALHAFAAGELR 841
            AKL   A G R     +LL  +RKEK+R PD+V+  G  L+     LG  LW ++EQV  AA+D+    + D    AL+ +FP S RV RLEGM +EA G+YA AD LY  +L KNPAN LV KR+V++  AQG+T +AI  LNA L  F  D   W +L++L+L   NY+ AAFCYEEL+L+NP D L H RLAE+Y T+GG + +  ARKHF+ + DL  A + R L GL    + +AS+K A       + E+NA LH FA  +LR
Sbjct:    6 AKLAAAAHGDR-EKGLELLEFVRKEKLRVPDVVVKVGQALVA-RGGLGDALWTIHEQVLIAALDLGAMDVVDSTFLALKNKFPDSSRVLRLEGMIFEAQGKYAQADALYKDILAKNPANMLVMKRQVSLLRAQGRTEDAITKLNALLRCFQTDAGAWCELSELYLSLGNYKHAAFCYEELILLNPLDALNHTRLAELYVTIGGLDNLRTARKHFAHALDLN-AQSTRGLVGLVMCTSAIASTKTARP--EKDDRELNARLHQFALQKLR 269
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BLAST of mRNA_S-ischiensis_contig11.2270.1 vs. uniprot
Match: A0A8K1CN06_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CN06_PYTOL)

HSP 1 Score: 204 bits (518), Expect = 6.520e-61
Identity = 114/265 (43.02%), Postives = 163/265 (61.51%), Query Frame = 2 
Query:   35 AKLTKDAAGGRFAPARDLLRLLRKEKVRRPDLVLAHGPPLL-GYHRRLGHELWVVYEQVFTAAVDVPNPALADKCLAALQRQFPGSERVRRLEGMRYEAAGQYADADKLYASMLEKNPANALVAKRKVAVQMAQGKTSEAIKALNAYLADFGGDPEGWLQLAKLHLDAANYELAAFCYEELVLINPSDPLLHCRLAEIYYTMGGPEGVMRARKHFSQSADLRRAGNARALHGLCAACATLASSKAAAKLLRGKEEEVNAALHAFA 826
            A LT     G +A    LL  +RKEK+R P +V+  G  LL  +  RLG ++W +YEQV  AA+D     LA+KCLAAL+ +FP S R  RLEGM +E  G+YA A+++Y  +L+ NPANAL+ KR++A    Q KT E I +LN  L +F  D   W +L + HL    Y  AAFCYEELV++NP D  LH RLA+IY T+GG + +  ARKH+ +S +L ++ N RA   L +    +A+ ++  +    +++E+N  +H FA
Sbjct:    8 AHLTLAEKSGGYANYVQLLATIRKEKLRVPRVVVRFGRELLENFKWRLGADIWTIYEQVLIAALDEYENELAEKCLAALKAKFPKSARAGRLEGMIFEQRGEYAKAEEIYEEILKTNPANALIMKRRIAALKGQKKTQEVIASLNELLRNFPTDQAAWTELGETHLSIGAYRYAAFCYEELVMLNPMDSFLHNRLADIYSTIGGVDNLRVARKHYCRSIELNKSMNVRAYAALLSTTRAIAAHRSNQRNNDAEDQELNDRVHKFA 272
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJ58_ECTSI1.500e-9761.07ER membrane protein complex subunit 2 n=1 Tax=Ecto... [more]
A0A6H5KPY1_9PHAE5.680e-7858.85ER membrane protein complex subunit 2 n=1 Tax=Ecto... [more]
A0A7S2CCR7_9STRA4.560e-7050.00ER membrane protein complex subunit 2 n=1 Tax=Flor... [more]
A0A0N7L4P2_PLAHL1.010e-6450.44ER membrane protein complex subunit 2 n=1 Tax=Plas... [more]
A0A7S2GPJ3_9STRA3.740e-6444.87ER membrane protein complex subunit 2 n=1 Tax=Dict... [more]
A0A7S2S8F2_9STRA6.280e-6448.82ER membrane protein complex subunit 2 n=1 Tax=Rhiz... [more]
W2QL82_PHYPN1.370e-6249.56ER membrane protein complex subunit 2 n=9 Tax=Phyt... [more]
A0A7S2UWF6_9STRA1.110e-6146.72ER membrane protein complex subunit 2 n=1 Tax=Fibr... [more]
A0A067CNU6_SAPPC1.410e-6146.84ER membrane protein complex subunit 2 n=2 Tax=Sapr... [more]
A0A8K1CN06_PYTOL6.520e-6143.02Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:2425811..2431277 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score301.6
Seed ortholog evalue3.8e-79
Seed eggNOG ortholog2880.D8LJ58
Preferred nameEMC2
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005789,GO:0006457,GO:0008150,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0022406,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0032991,GO:0034975,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0051179,GO:0051640,GO:0051641,GO:0071840,GO:0072546,GO:0098796,GO:0098827,GO:0140056,GO:1990456
EggNOG free text desc.protein folding in endoplasmic reticulum
EggNOG OGsKOG3060@1,KOG3060@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-02_004860.1
Exons6
Model size843
Cds size825
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815611.0712948-UTR-S-ischiensis_contig11:2425810..24258261622815611.0712948-UTR-S-ischiensis_contig11:2425810..2425826Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 2425811..2425826 +
1695739802.5474696-UTR-S-ischiensis_contig11:2425810..24258261695739802.5474696-UTR-S-ischiensis_contig11:2425810..2425826Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 2425811..2425826 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815611.0830781-CDS-S-ischiensis_contig11:2425826..24259221622815611.0830781-CDS-S-ischiensis_contig11:2425826..2425922Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2425827..2425922 +
1695739802.560696-CDS-S-ischiensis_contig11:2425826..24259221695739802.560696-CDS-S-ischiensis_contig11:2425826..2425922Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2425827..2425922 +
1622815611.0964274-CDS-S-ischiensis_contig11:2426099..24261921622815611.0964274-CDS-S-ischiensis_contig11:2426099..2426192Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2426100..2426192 +
1695739802.5730877-CDS-S-ischiensis_contig11:2426099..24261921695739802.5730877-CDS-S-ischiensis_contig11:2426099..2426192Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2426100..2426192 +
1622815611.1104486-CDS-S-ischiensis_contig11:2426861..24270681622815611.1104486-CDS-S-ischiensis_contig11:2426861..2427068Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2426862..2427068 +
1695739802.5857015-CDS-S-ischiensis_contig11:2426861..24270681695739802.5857015-CDS-S-ischiensis_contig11:2426861..2427068Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2426862..2427068 +
1622815611.120912-CDS-S-ischiensis_contig11:2428345..24284801622815611.120912-CDS-S-ischiensis_contig11:2428345..2428480Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2428346..2428480 +
1695739802.5947728-CDS-S-ischiensis_contig11:2428345..24284801695739802.5947728-CDS-S-ischiensis_contig11:2428345..2428480Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2428346..2428480 +
1622815611.1312754-CDS-S-ischiensis_contig11:2429774..24298661622815611.1312754-CDS-S-ischiensis_contig11:2429774..2429866Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2429775..2429866 +
1695739802.6126895-CDS-S-ischiensis_contig11:2429774..24298661695739802.6126895-CDS-S-ischiensis_contig11:2429774..2429866Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2429775..2429866 +
1622815611.141761-CDS-S-ischiensis_contig11:2431075..24312771622815611.141761-CDS-S-ischiensis_contig11:2431075..2431277Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2431076..2431277 +
1695739802.6287124-CDS-S-ischiensis_contig11:2431075..24312771695739802.6287124-CDS-S-ischiensis_contig11:2431075..2431277Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2431076..2431277 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2270.1prot_S-ischiensis_contig11.2270.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 2425827..2431277 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2270.1

>prot_S-ischiensis_contig11.2270.1 ID=prot_S-ischiensis_contig11.2270.1|Name=mRNA_S-ischiensis_contig11.2270.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=275bp
MPVAELAKLTKDAAGGRFAPARDLLRLLRKEKVRRPDLVLAHGPPLLGYH
RRLGHELWVVYEQVFTAAVDVPNPALADKCLAALQRQFPGSERVRRLEGM
RYEAAGQYADADKLYASMLEKNPANALVAKRKVAVQMAQGKTSEAIKALN
AYLADFGGDPEGWLQLAKLHLDAANYELAAFCYEELVLINPSDPLLHCRL
AEIYYTMGGPEGVMRARKHFSQSADLRRAGNARALHGLCAACATLASSKA
AAKLLRGKEEEVNAALHAFAAGELR
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mRNA from alignment at S-ischiensis_contig11:2425811..2431277+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2270.1 ID=mRNA_S-ischiensis_contig11.2270.1|Name=mRNA_S-ischiensis_contig11.2270.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=5467bp|location=Sequence derived from alignment at S-ischiensis_contig11:2425811..2431277+ (Schizocladia ischiensis KU_0333)
CGCCCGCTCCGACAACATGCCGGTCGCGGAGCTCGCCAAGCTCACCAAGG
ATGCGGCTGGCGGGCGATTCGCGCCCGCCAGGGATTTGTTGAGGCTCTTG
CGGAAGGAGAAGGTGCGGCGCCCCCGCATGGGGCCTTTCCAGGCTTGGCT
CTATTGTGGCTTGACTTGAGTAGAGCAATGAACACCTCCCTGGTGACTGC
CGGCGCAAGGCATTTTCGCGTTTTCTCCCCAGGGTCAAGCCTGCTGGCAT
GCTGACCCTTGAAGTGTGCGCGTCTTCCCGGGCACACAGGTCCGGCGACC
AGATCTGGTGCTGGCGCACGGGCCGCCGCTGCTGGGGTACCACAGACGAC
TGGGCCACGAGCTATGGGTCGTCTACGAGCAGGTCCGCCGGATGTTGACT
ACTGCCACCGCCCAGCATGTAACCAGGACAGTTTCTTCTGCAGTAGAAGC
CCGGGGCGCGCGGGCCACCCGGCATGTACGCAGCAGGACAGTTTTTCTGT
GGCACAAGTCCAAGTACAGTGCTGTTGCTTTCGACCCAAACCCTGCGTTG
TTCTTGTGGCGTTGTTCTGTAAATTACGGCGTGTCGTGGCCCTGGGCGAA
GCGATTTCCACGATACTTCGAAGCACGTGTTATGTGCGTGGGTCCATGCA
TGTCGGTGAGCGTGCGGGTGGGCCGGGGGGGGGGTGGGGGGTTGAGCTCG
CATTGCACTTGTCATACTTAGCCTGGAGACGGTTAACCGCAGAAGATGTA
CGAGTACTCGTACTGTGCACTTTTTGAAGGTGGTCATTGTCAAGGTTTGG
TTCAACGGTCGTCGATGATGCGTCGTGCGCGTTGGACTACGCACTGCACT
CCTTCAGACATGAAACAACTTTTTAAATTCCATTTCGCAAACACAATGTA
AGCACACCCCGAAGGCATTGGCGCGCCATGCTGTGCCGGAGCAACGGTAC
TGTACACTGTGCATTCATTCCTTGTCTTGATCGCCGCCGGCAGTGATCAC
ATGGTCAGTCGTCATACGTATGCACCTCCACACCCACTTTGTCGTTTTCA
GGTGTTTACAGCGGCTGTGGACGTGCCCAATCCGGCCCTTGCCGACAAGT
GCCTGGCCGCGCTGCAGCGCCAGTTCCCGGGCAGCGAGCGCGTGCGGCGC
CTGGAAGGCATGCGCTATGAGGCGGCCGGGCAGTATGCCGACGCGGACAA
ACTCTACGCCTCCATGCTTGAGAAGAACCCCGCCAATGCCCTCGTCGCAA
AAAGAAAGGTGGGTGGTGGTGGTGGTGGTGGTGGTGAGGTCTATGAGGTC
TGTGAGGGGTTGCCTTGCCAGAGGCATGCGCAGAGGGAGGGTCAGGGAGG
GCGGGAGGATGCACGGCTTGCCCCTAGGGACGAGTAGAGGCTTGCTTCCC
GGGTGCGGGCCTCGGGCATGTGTTTCACAAGTACTATATAGTATGTGCCC
CCTCCCACCCTGGCTCTGCCAGGGGAGGAAGGGGTCCTGCTCCGTCTCGA
CCGAGGCGTGTGGTCAATGGTCTCGGGACTACGGCAAGCACCGCGTGAGT
ATGTACTCATTGGTTTGTCTTGCGACATAACCGTGCGTGCATTGCCGACA
GCCCTAAGTCGAAACTTCGGGTTTGCCCTCCGACAGGAGTAGCTATTAGG
CCATGGACTCTCACATCCCAACTAGGCCGGGACGGAGCATGCCGGGTATA
TATATATATATATATATGCGACTGGTTGTGGGCCAGTACACTTTCTTCCT
GGACCAACCGTCCAGCCCCCGCAGGGTAGTTGTCCTTCTGGCCATTTACC
TCGCGTCCCTGCTATGACGGGACGGAGCGTGCCAGGCTATCACTGGCCAG
GTGTGGGTTGCACAATGATCCTGACTTGCCGTTGCACCCTTGAGGCTACG
GGATTTTACCAGTGCCCCCCTGCTTGGGCGGGCAAGCTGGGGATGGCTAT
TGTGAGCTCTGGGGGGGAGAAGAACGCGGTGCAACCCGGTACCATAATTC
TTGTGCATATGTTTGCGAGAGGCCCATTTCGCGGGAACGTCGGGGCCCCC
AAGGGGATTCGAAACCGCGACCTTCGGGCTGTGAGCCCATTCCTGGACCG
CCCGACTAAACGAGCACAAGATGACGATGGCGTATGTATGTGTGTATGCA
CGTTGGACAGGGGACACCCCGCCCTGTGCACGCCACCGACCGTCGGCCCA
GTTTACCACTTGCTGGACCGCCGGCCAGCCCCCACAGGGTACTTGGGCCT
TTTGGACGTTGGCCGCGCGTCCCTGCTCCGCCGGGACGGAGCATACCGGG
TTCTCGCCTCTTTGGCCAGGCGATATGTGCAGTACCTCTAGACATGTACT
GACGCTGTCCTTGCCCTACAGTAGCCCAGACAAACCTTTGGCTTCACGCC
CTCTTCCGAGGAAGGGTTAAAGCGGGTTGACTGTGAAGAGACTCAAGAGA
GTGCTGCAACAGTACTCAAGTACTCACATGCTGAGCTCGCTAAAAACTGG
ATCGGGGCTGGGGCCTGGGCCTGGCACGGGGGCAGGTGGCAGTCCAGATG
GCGCAGGGCAAGACGTCCGAGGCGATCAAGGCCCTGAACGCGTATCTCGC
GGACTTTGGGGGGGACCCGGAGGGCTGGCTGCAGCTGGCTAAGCTGCACT
TGGACGCCGCCAACTACGAGGTTGGTGTCTGCGTGTTCATCCATGTGGTG
AAATGGTGTGGTGATTCATACAAATTGTAGCGAGGTACAATCGCACGTGT
GTGAGATTGACTGTTCTCGTATTAGTAGTTGTCCCATTTCAGAATTGAGT
GTTCTTATGTTAGTGATTGTCGCATCAAGGCACTAAGAACAAGGAGGGGT
GAACGGTGTGACGTAATGCGATGTGTACTCACGTTGTGCTTTGCCGCAGT
CCCCGAGACCATTGACCACGCGCCGTTTGACGGCGGAGCAAGCCCTGGCA
AGCCAGGGTGGGAGGGAGGGACCACCCCCTTGCTCACGGCGGGGGGGTGG
TTGGGTCCATACTTACCCCGCCCACTCCTGACTCGTGACGTGATGTGATG
AGCGCTCAAGTGTGCTTTGGTTTGACGTCACATCGCATCGCATCACACTC
CCCCGTGTCCGGCGTTGGGGGGCGACGGACGAGTGCAGGCGTGTGCGTGG
GGCTGCCCCCCCCGCTCTGTCGTTTTTCTGCCAGTGTTTTGAGCGTTGGG
CGCCTCCTCTGCTTGTGGACGTGATTCTGTTTCTCTGTGGCGGTGTGTGT
GTGTGTGTGCGTGTGTGCGTGCGTGCGCGCGCGTGTGTGCGTGCGTGTGG
TGTACATACTGGTAGTACTTGTACTCGAGTTGCAATGTGGGTGACACTCT
AACACCCCTCCCTGTGTGTGCACCAAGTACCATGCTTGTCAAGCTTGTGA
CACGTGTTGTTTTTCGCTCCCAGTGTTCAGCAAGCCCAAAGTTTCGACTT
TGGGCTGTCGGCAGTGCACGCAAGCCTTGTCACAAGAAAGCCAATGAGTA
CAGATAGACAGTGTGTTTTCCGTGTGTTGGGCCTCAGCCATGCTTGTGTC
TTGTGTTGCTGTGGTGGGTGTGCGTGCGCGATTCCATGTCAAGTGAACTC
CTCTACAGTGGTGCGCTGTACAGCAGTTTGGCATCACATCACATCACATC
ACAGCAGTGTCGGAAATGTGATGCATGTGTCTTCGTGCGCTATCCTCCGT
CTTGTCCGAGGCATATGGTCAATGGTCTCGGGACTACGGCAAGCACAACG
TGAGTACATGTACTACGTAGTATATACTCTACTGTCGATGACATTGCGTT
GCATCACATGGCGCCGCGTGACCATGAACATTCGGCCGCCACCCCTGGCG
CCGTCCTGCCCTCCTGCGTGTCTCGTCCGCTGCCCGCTTGCCTCCCGCTG
CATGGCCCGGGTTGTCCCGCTGCGTGGGACGGGGCTGTGATTCATATACA
TTGTAACGGGGCAGCTGGCGGCCTTCTGCTACGAGGAGCTGGTGCTTATC
AACCCCTCGGACCCGCTGCTGCATTGCCGCCTCGCGGAGATCTACTACAC
CATGGGGTGCGTGCACGAGAGTGATATATATATATATATACTACGTAGTA
TGTGCTCATGCTGTGCTTGATACCAAGTATATTGCTGCTGTACAAGTAGC
GCTACAGTACTGCTCGGACTACTTGGAAGTGCTTTGCGTTATGTGATTGC
TGTACTCGAGAAGTACTACATACATAGTACAGGTATTCCGGAGAACTGCG
GCTCGCTGAGCCCGGTTCCCGGTTGCAGTCCGGCTTTTTCGCCCGAAACT
TCTGTGCCTGTGTGTGCATTCCGCGCGCTACTTACTCTTCAGGCGAAGTC
GGCAAAGCGCTCGGCGGTGGATATAGAGTGCGTACTCACGTCTCTGTGCA
TGCCCTGGACCCGAACGATCCTCGTCTTTGCTCCTTCTCGTGGATTGCTG
GCCAGCTGTAGCTTTCGCCATTGGCCACGCGTCCAGAGTACATTGCCAAG
TGCTGTGAAGTACTTCTCCTGGGAACGAACAACGATTTATGGGGCGAGAA
ACGCCTCCGACAACCGCAGTACTTACGCTGTGCGTGACAGAAGCATCTCC
GCCCGCTTCTGCCCACCGGCCCGCCTGACGGCGGCCGGCCCGTGCTCGCT
GAGCCGCCAGTGCCTAAGTACCTGCCTGCCACAGCGTCGCCCACCCTGAC
TACTGAACTTCCAAGGAACCGGTGTTCATACGTTGTACGTATACTAAGTG
AGCACACATTGTGCTTGCCGTAGTCCCTAGATCATTGGCCATTGAGAGTT
GAACTCAGCCCGTCAAAACTTCGCGTGCGTGTGCACCTTCCCCCCCCCCG
GTCCAGGGACGGACGCCTATAAATCCCTCCGCGCCCGGCGCCCATCCGTG
CACAGTGATGGAATATCTAGGCAAATCAACCTGTTTGTCGACAGTACTGA
TGTATTTTGAGCGGTAGATAGGTGGCGAGTTCCAGGCCCCGTGCCAAAAG
GCTCGTCCCGAAACAGGACTCAACGAAGCCCTTCTTCCCCTAGCAGAACG
AAAAGAAAGCAAAAAATAAAGAAGGGGCGGGGTGATGAGGAAAGGGAAGA
GGCGCAGGGAAGTACTGATCTATATATCCACCTATAGTCGATATTCGATA
GTTTGACCCACACTAAATCCAAGTACAAGTAGTCAGTAATGCCACCCTCA
AAATCAGTTGAGCCCGATAGCTATCTACTCGTACTGATCGATATTCCATG
ACTGGTGCGCTGCAGGGGCCCCGAGGGCGTGATGCGGGCGCGGAAGCACT
TCTCACAGTCCGCGGACCTGCGGCGGGCCGGGAACGCGCGCGCGCTGCAC
GGGCTGTGCGCGGCGTGCGCCACCCTGGCTTCCAGCAAGGCGGCGGCCAA
GCTGCTGCGGGGCAAGGAGGAGGAGGTGAACGCTGCGCTGCACGCCTTCG
CGGCCGGGGAACTCCGT
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:2425811..2431277+

>mRNA_S-ischiensis_contig11.2270.1 ID=mRNA_S-ischiensis_contig11.2270.1|Name=mRNA_S-ischiensis_contig11.2270.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1650bp|location=Sequence derived from alignment at S-ischiensis_contig11:2425811..2431277+ (Schizocladia ischiensis KU_0333)
ATGCCGGTCGCGGAGCTCGCCAAGCTCACCAAGGATGCGGCTGGCGGGCG
ATTCGCGCCCGCCAGGGATTTGTTGAGGCTCTTGCGGAAGGAGAAGATGC
CGGTCGCGGAGCTCGCCAAGCTCACCAAGGATGCGGCTGGCGGGCGATTC
GCGCCCGCCAGGGATTTGTTGAGGCTCTTGCGGAAGGAGAAGGTCCGGCG
ACCAGATCTGGTGCTGGCGCACGGGCCGCCGCTGCTGGGGTACCACAGAC
GACTGGGCCACGAGCTATGGGTCGTCTACGAGCAGGTCCGGCGACCAGAT
CTGGTGCTGGCGCACGGGCCGCCGCTGCTGGGGTACCACAGACGACTGGG
CCACGAGCTATGGGTCGTCTACGAGCAGGTGTTTACAGCGGCTGTGGACG
TGCCCAATCCGGCCCTTGCCGACAAGTGCCTGGCCGCGCTGCAGCGCCAG
TTCCCGGGCAGCGAGCGCGTGCGGCGCCTGGAAGGCATGCGCTATGAGGC
GGCCGGGCAGTATGCCGACGCGGACAAACTCTACGCCTCCATGCTTGAGA
AGAACCCCGCCAATGCCCTCGTCGCAAAAAGAAAGGTGTTTACAGCGGCT
GTGGACGTGCCCAATCCGGCCCTTGCCGACAAGTGCCTGGCCGCGCTGCA
GCGCCAGTTCCCGGGCAGCGAGCGCGTGCGGCGCCTGGAAGGCATGCGCT
ATGAGGCGGCCGGGCAGTATGCCGACGCGGACAAACTCTACGCCTCCATG
CTTGAGAAGAACCCCGCCAATGCCCTCGTCGCAAAAAGAAAGGTGGCAGT
CCAGATGGCGCAGGGCAAGACGTCCGAGGCGATCAAGGCCCTGAACGCGT
ATCTCGCGGACTTTGGGGGGGACCCGGAGGGCTGGCTGCAGCTGGCTAAG
CTGCACTTGGACGCCGCCAACTACGAGGTGGCAGTCCAGATGGCGCAGGG
CAAGACGTCCGAGGCGATCAAGGCCCTGAACGCGTATCTCGCGGACTTTG
GGGGGGACCCGGAGGGCTGGCTGCAGCTGGCTAAGCTGCACTTGGACGCC
GCCAACTACGAGCTGGCGGCCTTCTGCTACGAGGAGCTGGTGCTTATCAA
CCCCTCGGACCCGCTGCTGCATTGCCGCCTCGCGGAGATCTACTACACCA
TGGGCTGGCGGCCTTCTGCTACGAGGAGCTGGTGCTTATCAACCCCTCGG
ACCCGCTGCTGCATTGCCGCCTCGCGGAGATCTACTACACCATGGGGGGC
CCCGAGGGCGTGATGCGGGCGCGGAAGCACTTCTCACAGTCCGCGGACCT
GCGGCGGGCCGGGAACGCGCGCGCGCTGCACGGGCTGTGCGCGGCGTGCG
CCACCCTGGCTTCCAGCAAGGCGGCGGCCAAGCTGCTGCGGGGCAAGGAG
GAGGAGGTGAACGCTGCGCTGCACGCCTTCGCGGCCGGGGAACTCCGTGG
GCCCCGAGGGCGTGATGCGGGCGCGGAAGCACTTCTCACAGTCCGCGGAC
CTGCGGCGGGCCGGGAACGCGCGCGCGCTGCACGGGCTGTGCGCGGCGTG
CGCCACCCTGGCTTCCAGCAAGGCGGCGGCCAAGCTGCTGCGGGGCAAGG
AGGAGGAGGTGAACGCTGCGCTGCACGCCTTCGCGGCCGGGGAACTCCGT
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