mRNA_S-ischiensis_contig11.2254.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2254.1
Unique NamemRNA_S-ischiensis_contig11.2254.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig11.2254.1 vs. uniprot
Match: A0A835ZDA5_9STRA (Zinc/iron permease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDA5_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.230e-22
Identity = 88/176 (50.00%), Postives = 106/176 (60.23%), Query Frame = 1
Query:   13 QAWVQALSATLAISVIPTAVLPFMPASASVAGGGVQSTLLSFAVGGLLGDVLLHLLPHLFASGGHHSHADGKALDVHGEGDFXXXXXXXXXXXXXXXXX---------SHGGHSHXXXXXXEEGAHG---DEGTIHGHGWGELSIGLTIVAGYLFFFACERALRAATGNGHGHSHG 504
            QAW  AL+AT AIS++PT VLPF+PASAS  G G    +L+FAVGG+LGDV LHLLPHL A+  H  H              XXXXXXXXXXXXXXXXX           G  S        +G+ G   D   +     GELS+G+T++ G+LFFF  ER +RAATG+  GHSHG
Sbjct:   10 QAWRHALAATAAISILPTLVLPFIPASASKPGSGPLKIMLAFAVGGMLGDVFLHLLPHLMAAHAHGIHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDAHAAEGFGAQSVARFFSLADGSVGVEVDSAQVMELLTGELSVGMTVLGGFLFFFLAERLIRAATGSRDGHSHG 185          
BLAST of mRNA_S-ischiensis_contig11.2254.1 vs. uniprot
Match: D7FGP3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGP3_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 3.180e-11
Identity = 39/68 (57.35%), Postives = 44/68 (64.71%), Query Frame = 1
Query:   10 AQAWVQALSATLAISVIPTAVLPFMPASASVAGGGVQSTLLSFAVGGLLGDVLLHLLPHLFASGGHHS 213
            A  W  A  AT  IS +PT VLPF+P SA+  G  VQ  LL FAVGG++GDV LHLLPHL    GH S
Sbjct:    2 AHPWRDAAIATGLISSVPTMVLPFIPESATKPGSAVQRILLCFAVGGMMGDVFLHLLPHLLT--GHKS 67          
BLAST of mRNA_S-ischiensis_contig11.2254.1 vs. uniprot
Match: A0A6H5KFX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFX4_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 7.420e-11
Identity = 36/60 (60.00%), Postives = 41/60 (68.33%), Query Frame = 1
Query:   10 AQAWVQALSATLAISVIPTAVLPFMPASASVAGGGVQSTLLSFAVGGLLGDVLLHLLPHL 189
            A  W  A  AT  IS +PT VLPF+P SA+  G  VQ  LL FAVGG++GDV LHLLPHL
Sbjct:    2 AHPWRDAAIATGLISSVPTMVLPFIPESATKPGSAVQRILLCFAVGGMMGDVFLHLLPHL 61          
BLAST of mRNA_S-ischiensis_contig11.2254.1 vs. uniprot
Match: A0A7S2UZX1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZX1_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.020e-10
Identity = 58/179 (32.40%), Postives = 77/179 (43.02%), Query Frame = 1
Query:   28 ALSATLAISVIPTAVLPFMPASASVAGGGVQSTLLSFAVGGLLGDVLLHLLPHLFASGGHHSHADGKALDVHGEGDFXXXXXXXXXXXXXXXXXSHGGHSHXXXXXXEEGA---------------------HGDEGTIHGHGWGELSIGLTIVAGYLFFFACERALRAATGNGHGHSH 501
            A  AT  IS++PT VLPF+P ++    G +   LL+FAVGGLLGDV LHL+PHL   G  H+H    ++   G  D                   H       XXXX                         H  +     H WGE+ +GL  + G++ FF  E+ +RA      GHSH
Sbjct:   10 AFGATALISIVPTLVLPFVPLNSKNINGRLHRVLLAFAVGGLLGDVFLHLIPHLMGGGHAHAHDHAPSVLPSGTEDLVADLLDSHDLRRKLQVDDHDHXXXHHXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHIWQLLFDPHIWGEVGVGLYCLGGFVLFFILEKLMRA------GHSH 182          
BLAST of mRNA_S-ischiensis_contig11.2254.1 vs. uniprot
Match: W7TT21_9STRA (Zinc transporter n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TT21_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 7.070e-10
Identity = 55/174 (31.61%), Postives = 75/174 (43.10%), Query Frame = 1
Query:    7 PAQAWVQALSATLAISVIPTAVLPFMPASASVAG-----GGVQSTLLSFAVGGLLGDVLLHLLPHLF-------ASGGHHSHADGKALDVHGEGDFXXXXXXXXXXXXXXXXXSHGGHSHXXXXXXEEGAHGDEGTIHGHGWGELSIGLTIVAGYLFFFACERALRAATGNGHG 492
            PA  W +A  AT  IS+ PT +LPF+P  + V G       +   LLSFA GGLLG+V LH LPHL        +S GHH H+ G A  +                        H           ++G  GDEG         L + + ++AG+L FF  E+ ++   G   G
Sbjct:   69 PAGEWAKAFGATAVISIFPTLILPFIPLVSFVDGVPSLHEDLHRLLLSFATGGLLGEVFLHSLPHLLERHDHFGSSHGHHHHSVGTACTL-----------DKTKAECCREEQEH---------HEKDGVRGDEGEA-------LRVSMHVLAGFLLFFISEKVVKLLLGEEDG 215          
BLAST of mRNA_S-ischiensis_contig11.2254.1 vs. uniprot
Match: A0A058ZBN5_FONAL (Uncharacterized protein n=1 Tax=Fonticula alba TaxID=691883 RepID=A0A058ZBN5_FONAL)

HSP 1 Score: 60.8 bits (146), Expect = 9.730e-8
Identity = 60/161 (37.27%), Postives = 77/161 (47.83%), Query Frame = 1
Query:   28 ALSATLAISVIPTAVLPFMPASASVAG--GGVQST--------LLSFAVGGLLGDVLLHLLPHLFASGGHHSHADGKALDVHGEGDFXXXXXXXXXXXXXXXXXSHGGHSHXXXXXXEEGAHGDEGTIHGHGWGELSIGLTIVAGYLFFFACERALRAATG 480
            AL A   +S+ P  +L F+P   SV     G ++         LL FA+GGL+GDV LHLLPH FA   H  H D      HG                     SHGGH  XXXXXX     GD G    H  G L++GL ++AG + FF  E+ +R ++G
Sbjct:  152 ALVAIAIVSIFPHTILQFIPFDTSVPKEVDGSEAPPASRWLRLLLGFAIGGLMGDVFLHLLPHAFAPHSHGDHGD------HGHS------------------HSHGGHGXXXXXXX-----GDHGAEDPHQQG-LAVGLALLAGIVVFFLIEKIMRISSG 282          
BLAST of mRNA_S-ischiensis_contig11.2254.1 vs. uniprot
Match: A0A0D2WPY0_CAPO3 (Catsup protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WPY0_CAPO3)

HSP 1 Score: 58.5 bits (140), Expect = 6.150e-7
Identity = 33/63 (52.38%), Postives = 43/63 (68.25%), Query Frame = 1
Query:   16 AWVQALSATLAISVIPTAVLPFMP---ASASVAGGGVQSTLLSFAVGGLLGDVLLHLLPHLFA 195
            AW+ AL +T  IS++P A+L F+P   A+++     +   LLSFA GGLLGDV LHLLPH FA
Sbjct:  200 AWIHALGSTALISILPIALLFFIPLDKAASATHASPLLKVLLSFAAGGLLGDVFLHLLPHSFA 262          
BLAST of mRNA_S-ischiensis_contig11.2254.1 vs. uniprot
Match: A0A8H7Q5V9_9FUNG (Uncharacterized protein n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7Q5V9_9FUNG)

HSP 1 Score: 57.8 bits (138), Expect = 9.720e-7
Identity = 35/72 (48.61%), Postives = 42/72 (58.33%), Query Frame = 1
Query:    7 PAQAWVQALSATLAISVIPTAVLPFMPASASVAGGGVQSTLLSFAVGGLLGDVLLHLLPHLFASGGHHSHAD 222
            P  A V +L AT  IS+ P  +L F+P     +     +TL+SFAVGGLLGDV LHLLPH F    H  H D
Sbjct:   13 PGNAMVNSLLATAYISIFPNLLLYFVPPDIDTSS---LNTLVSFAVGGLLGDVFLHLLPHAFLGEHHDEHVD 81          
BLAST of mRNA_S-ischiensis_contig11.2254.1 vs. uniprot
Match: A0A1X2IR36_9FUNG (Zinc/iron permease n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2IR36_9FUNG)

HSP 1 Score: 57.8 bits (138), Expect = 9.910e-7
Identity = 37/78 (47.44%), Postives = 46/78 (58.97%), Query Frame = 1
Query:    7 PAQAWVQALSATLAISVIPTAVLPFMPASASVAGGGVQSTLLSFAVGGLLGDVLLHLLPHLFASGGHHSHADGKALDV 240
            P  A V +L AT  IS+ P  +L F+P     A     +TL+SFAVGGLLGDV LHLLPH F  G H+ H     ++V
Sbjct:   14 PGSAMVNSLLATAYISIFPNLLLYFVPPDIDTAS---LNTLVSFAVGGLLGDVFLHLLPHAFL-GEHNDHDHAAVVEV 87          
BLAST of mRNA_S-ischiensis_contig11.2254.1 vs. uniprot
Match: A0A8H7PXW8_MORIS (Uncharacterized protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7PXW8_MORIS)

HSP 1 Score: 55.8 bits (133), Expect = 4.540e-6
Identity = 36/75 (48.00%), Postives = 44/75 (58.67%), Query Frame = 1
Query:    7 PAQAWVQALSATLAISVIPTAVLPFMPASASVAGGGVQSTLLSFAVGGLLGDVLLHLLPHLFASGGHHSHADGKA 231
            P  A V +L AT  IS+ P  +L F+P     +     +TL+SFAVGGLLGDV LHLLPH F   G H+   G A
Sbjct:   13 PGSAMVNSLLATCYISIFPNLLLYFVPPDIDTSS---LNTLVSFAVGGLLGDVFLHLLPHAFL--GEHNEGSGPA 82          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZDA5_9STRA1.230e-2250.00Zinc/iron permease n=1 Tax=Tribonema minus TaxID=3... [more]
D7FGP3_ECTSI3.180e-1157.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KFX4_9PHAE7.420e-1160.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2UZX1_9STRA1.020e-1032.40Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
W7TT21_9STRA7.070e-1031.61Zinc transporter n=2 Tax=Monodopsidaceae TaxID=425... [more]
A0A058ZBN5_FONAL9.730e-837.27Uncharacterized protein n=1 Tax=Fonticula alba Tax... [more]
A0A0D2WPY0_CAPO36.150e-752.38Catsup protein n=1 Tax=Capsaspora owczarzaki (stra... [more]
A0A8H7Q5V9_9FUNG9.720e-748.61Uncharacterized protein n=1 Tax=Umbelopsis vinacea... [more]
A0A1X2IR36_9FUNG9.910e-747.44Zinc/iron permease n=1 Tax=Absidia repens TaxID=90... [more]
A0A8H7PXW8_MORIS4.540e-648.00Uncharacterized protein n=1 Tax=Mortierella isabel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:2280323..2280951 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score68.6
Seed ortholog evalue3.3e-09
Seed eggNOG ortholog7029.ACYPI004908-PA
Preferred nameCatsup
KEGG koko:K14713
KEGG TC2.A.5.4.3,2.A.5.4.4,2.A.5.4.7
GOsGO:0000003,GO:0000041,GO:0001667,GO:0002064,GO:0002065,GO:0002066,GO:0003006,GO:0003674,GO:0005215,GO:0005385,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006810,GO:0006811,GO:0006812,GO:0006829,GO:0006873,GO:0006875,GO:0006882,GO:0006928,GO:0006950,GO:0007276,GO:0007281,GO:0007292,GO:0007297,GO:0007298,GO:0008021,GO:0008150,GO:0008324,GO:0009636,GO:0009888,GO:0009987,GO:0010035,GO:0010038,GO:0010043,GO:0010312,GO:0010631,GO:0010632,GO:0012505,GO:0015075,GO:0015318,GO:0016477,GO:0019222,GO:0019725,GO:0019953,GO:0022412,GO:0022414,GO:0022857,GO:0022890,GO:0030001,GO:0030003,GO:0030133,GO:0030154,GO:0030234,GO:0030334,GO:0030424,GO:0030707,GO:0030855,GO:0031323,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0033238,GO:0034220,GO:0036477,GO:0040011,GO:0040012,GO:0042069,GO:0042221,GO:0042592,GO:0042995,GO:0043005,GO:0043025,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044297,GO:0044422,GO:0044424,GO:0044432,GO:0044444,GO:0044446,GO:0044456,GO:0044464,GO:0044703,GO:0045202,GO:0046873,GO:0046915,GO:0046916,GO:0048468,GO:0048471,GO:0048477,GO:0048609,GO:0048856,GO:0048869,GO:0048870,GO:0048878,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050801,GO:0050896,GO:0051171,GO:0051179,GO:0051234,GO:0051239,GO:0051270,GO:0051674,GO:0051704,GO:0055065,GO:0055069,GO:0055076,GO:0055080,GO:0055082,GO:0055085,GO:0060429,GO:0065007,GO:0065008,GO:0065009,GO:0070382,GO:0070838,GO:0071577,GO:0072503,GO:0072507,GO:0072509,GO:0072511,GO:0080090,GO:0090130,GO:0090132,GO:0097038,GO:0097458,GO:0097501,GO:0097708,GO:0098655,GO:0098660,GO:0098662,GO:0098754,GO:0098771,GO:0098772,GO:0098793,GO:0099503,GO:0120025,GO:1990359,GO:2000026,GO:2000145,GO:2000274
EggNOG free text desc.ZIP Zinc transporter
EggNOG OGs38FZT@33154,3BEK2@33208,3CS6P@33213,3E7M0@33342,3SGD1@50557,41W02@6656,COG0428@1,KOG2693@2759
COG Functional cat.P
Best tax levelParaneoptera
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categorysignal peptide
Exons2
Model size510
Cds size510
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815609.6762397-CDS-S-ischiensis_contig11:2280322..22805211622815609.6762397-CDS-S-ischiensis_contig11:2280322..2280521Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2280323..2280521 +
1695739801.583772-CDS-S-ischiensis_contig11:2280322..22805211695739801.583772-CDS-S-ischiensis_contig11:2280322..2280521Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2280323..2280521 +
1622815609.6909125-CDS-S-ischiensis_contig11:2280640..22809511622815609.6909125-CDS-S-ischiensis_contig11:2280640..2280951Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2280641..2280951 +
1695739801.5989177-CDS-S-ischiensis_contig11:2280640..22809511695739801.5989177-CDS-S-ischiensis_contig11:2280640..2280951Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2280641..2280951 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2254.1prot_S-ischiensis_contig11.2254.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 2280323..2280951 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2254.1

>prot_S-ischiensis_contig11.2254.1 ID=prot_S-ischiensis_contig11.2254.1|Name=mRNA_S-ischiensis_contig11.2254.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=170bp
MAPAQAWVQALSATLAISVIPTAVLPFMPASASVAGGGVQSTLLSFAVGG
LLGDVLLHLLPHLFASGGHHSHADGKALDVHGEGDFHGDEHSHGEDHFHG
DGHSHGGHSHGGHTHGEEGAHGDEGTIHGHGWGELSIGLTIVAGYLFFFA
CERALRAATGNGHGHSHGG*
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mRNA from alignment at S-ischiensis_contig11:2280323..2280951+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2254.1 ID=mRNA_S-ischiensis_contig11.2254.1|Name=mRNA_S-ischiensis_contig11.2254.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=629bp|location=Sequence derived from alignment at S-ischiensis_contig11:2280323..2280951+ (Schizocladia ischiensis KU_0333)
ATGGCGCCAGCGCAAGCATGGGTGCAAGCTCTGAGCGCTACGTTGGCAAT CAGCGTGATCCCCACAGCTGTGCTCCCCTTTATGCCCGCCAGCGCCAGCG TTGCAGGGGGTGGGGTCCAGTCAACGCTGCTGTCATTCGCCGTCGGCGGG TTGCTCGGGGATGTTCTACTGCACCTTCTGCCCCATCTGTTCGCCTCCGG TGAGTTCACTGGGCCCAAGTAAAAGTGTCGAAATGCGCCCCGAAGAGGAG CACGGAGGGGCCCGTGCACTCACCTCGGCATCCCCGCCTGCCCCGCCCCC CGCGCGCGCTGGCAACAGGGGGGCACCACTCCCATGCTGATGGCAAGGCG CTCGACGTGCATGGCGAGGGGGACTTTCATGGGGATGAGCACTCCCACGG GGAGGACCACTTTCACGGGGATGGCCACTCCCACGGCGGGCACTCTCACG GCGGACACACGCACGGAGAGGAGGGCGCCCACGGCGACGAGGGCACAATA CACGGGCACGGGTGGGGGGAGCTGTCCATCGGGTTGACGATCGTGGCCGG GTACCTGTTTTTTTTCGCGTGTGAGCGGGCGCTCCGCGCTGCCACGGGCA ACGGCCACGGGCACTCGCATGGGGGGTAg
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:2280323..2280951+

>mRNA_S-ischiensis_contig11.2254.1 ID=mRNA_S-ischiensis_contig11.2254.1|Name=mRNA_S-ischiensis_contig11.2254.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1020bp|location=Sequence derived from alignment at S-ischiensis_contig11:2280323..2280951+ (Schizocladia ischiensis KU_0333)
ATGGCGCCAGCGCAAGCATGGGTGCAAGCTCTGAGCGCTACGTTGGCAAT
CAGCGTGATCCCCACAGCTGTGCTCCCCTTTATGCCCGCCAGCGCCAGCG
TTGCAGGGGGTGGGGTCCAGTCAACGCTGCTGTCATTCGCCGTCGGCGGG
TTGCTCGGGGATGTTCTACTGCACCTTCTGCCCCATCTGTTCGCCTCCGA
TGGCGCCAGCGCAAGCATGGGTGCAAGCTCTGAGCGCTACGTTGGCAATC
AGCGTGATCCCCACAGCTGTGCTCCCCTTTATGCCCGCCAGCGCCAGCGT
TGCAGGGGGTGGGGTCCAGTCAACGCTGCTGTCATTCGCCGTCGGCGGGT
TGCTCGGGGATGTTCTACTGCACCTTCTGCCCCATCTGTTCGCCTCCGGG
GGGCACCACTCCCATGCTGATGGCAAGGCGCTCGACGTGCATGGCGAGGG
GGACTTTCATGGGGATGAGCACTCCCACGGGGAGGACCACTTTCACGGGG
ATGGCCACTCCCACGGCGGGCACTCTCACGGCGGACACACGCACGGAGAG
GAGGGCGCCCACGGCGACGAGGGCACAATACACGGGCACGGGTGGGGGGA
GCTGTCCATCGGGTTGACGATCGTGGCCGGGTACCTGTTTTTTTTCGCGT
GTGAGCGGGCGCTCCGCGCTGCCACGGGCAACGGCCACGGGCACTCGCAT
GGGGGGTAgGGGGGCACCACTCCCATGCTGATGGCAAGGCGCTCGACGTG
CATGGCGAGGGGGACTTTCATGGGGATGAGCACTCCCACGGGGAGGACCA
CTTTCACGGGGATGGCCACTCCCACGGCGGGCACTCTCACGGCGGACACA
CGCACGGAGAGGAGGGCGCCCACGGCGACGAGGGCACAATACACGGGCAC
GGGTGGGGGGAGCTGTCCATCGGGTTGACGATCGTGGCCGGGTACCTGTT
TTTTTTCGCGTGTGAGCGGGCGCTCCGCGCTGCCACGGGCAACGGCCACG
GGCACTCGCATGGGGGGTAg
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