mRNA_S-ischiensis_contig11.2249.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2249.1
Unique NamemRNA_S-ischiensis_contig11.2249.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:2256220..2256690 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size451
Cds size450
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815579.1411564-CDS-S-ischiensis_contig11:2256219..22562861622815579.1411564-CDS-S-ischiensis_contig11:2256219..2256286Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2256220..2256286 +
1695739782.465016-CDS-S-ischiensis_contig11:2256219..22562861695739782.465016-CDS-S-ischiensis_contig11:2256219..2256286Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2256220..2256286 +
1622815579.151983-CDS-S-ischiensis_contig11:2256307..22566901622815579.151983-CDS-S-ischiensis_contig11:2256307..2256690Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2256308..2256690 +
1695739782.4737391-CDS-S-ischiensis_contig11:2256307..22566901695739782.4737391-CDS-S-ischiensis_contig11:2256307..2256690Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2256308..2256690 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2249.1prot_S-ischiensis_contig11.2249.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 2256220..2256690 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2249.1

>prot_S-ischiensis_contig11.2249.1 ID=prot_S-ischiensis_contig11.2249.1|Name=mRNA_S-ischiensis_contig11.2249.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=150bp
MSASPNVAGVAPRWGDACGGDSGGGGGGSGGGGAAHNAPGGPKISAEGQA
GGSRSGGGGWEAVPASGSSGVSNKSRDGGGRSGGSGGAGEELPHDDDPAA
SPSAGNSPRAGGGPYAPPAVGRTKGKKVVQVQQAACERAPGHDSAAVHGG
back to top

mRNA from alignment at S-ischiensis_contig11:2256220..2256690+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2249.1 ID=mRNA_S-ischiensis_contig11.2249.1|Name=mRNA_S-ischiensis_contig11.2249.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=471bp|location=Sequence derived from alignment at S-ischiensis_contig11:2256220..2256690+ (Schizocladia ischiensis KU_0333)
ATGTCTGCAAGCCCCAATGTTGCGGGTGTTGCTCCCCGGTGGGGTGATGC
TTGCGGTGGCGACAGCGGTGACGGCGGCGGTAGCGGAGGCGGCGGCGGCG
GCGGCAGCGGCGGCGGCGGCGCCGCGCACAACGCTCCGGGCGGGCCCAAG
ATTTCTGCCGAGGGGCAGGCTGGTGGCAGCAGATCCGGGGGGGGCGGCTG
GGAGGCGGTGCCGGCCAGCGGCAGCAGCGGCGTCAGCAACAAAAGCAGAG
ACGGCGGCGGCAGGAGTGGCGGGTCCGGGGGCGCTGGCGAGGAGCTCCCC
CACGATGATGACCCCGCTGCCAGCCCCTCGGCGGGCAACTCGCCCAGGGC
GGGGGGAGGGCCCTATGCGCCCCCGGCGGTGGGCCGCACGAAGGGCAAGA
AGGTGGTCCAGGTGCAGCAGGCCGCCTGCGAGCGAGCGCCGGGTCACGAT
TCTGCCGCCGTCCATGGTGGC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig11:2256220..2256690+

>mRNA_S-ischiensis_contig11.2249.1 ID=mRNA_S-ischiensis_contig11.2249.1|Name=mRNA_S-ischiensis_contig11.2249.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=900bp|location=Sequence derived from alignment at S-ischiensis_contig11:2256220..2256690+ (Schizocladia ischiensis KU_0333)
ATGTCTGCAAGCCCCAATGTTGCGGGTGTTGCTCCCCGGTGGGGTGATGC
TTGCGGTGGCGACAGCGATGTCTGCAAGCCCCAATGTTGCGGGTGTTGCT
CCCCGGTGGGGTGATGCTTGCGGTGGCGACAGCGGCGGCGGCGGCGGCGG
CAGCGGCGGCGGCGGCGCCGCGCACAACGCTCCGGGCGGGCCCAAGATTT
CTGCCGAGGGGCAGGCTGGTGGCAGCAGATCCGGGGGGGGCGGCTGGGAG
GCGGTGCCGGCCAGCGGCAGCAGCGGCGTCAGCAACAAAAGCAGAGACGG
CGGCGGCAGGAGTGGCGGGTCCGGGGGCGCTGGCGAGGAGCTCCCCCACG
ATGATGACCCCGCTGCCAGCCCCTCGGCGGGCAACTCGCCCAGGGCGGGG
GGAGGGCCCTATGCGCCCCCGGCGGTGGGCCGCACGAAGGGCAAGAAGGT
GGTCCAGGTGCAGCAGGCCGCCTGCGAGCGAGCGCCGGGTCACGATTCTG
CCGCCGTCCATGGTGGCGCGGCGGCGGCGGCGGCAGCGGCGGCGGCGGCG
CCGCGCACAACGCTCCGGGCGGGCCCAAGATTTCTGCCGAGGGGCAGGCT
GGTGGCAGCAGATCCGGGGGGGGCGGCTGGGAGGCGGTGCCGGCCAGCGG
CAGCAGCGGCGTCAGCAACAAAAGCAGAGACGGCGGCGGCAGGAGTGGCG
GGTCCGGGGGCGCTGGCGAGGAGCTCCCCCACGATGATGACCCCGCTGCC
AGCCCCTCGGCGGGCAACTCGCCCAGGGCGGGGGGAGGGCCCTATGCGCC
CCCGGCGGTGGGCCGCACGAAGGGCAAGAAGGTGGTCCAGGTGCAGCAGG
CCGCCTGCGAGCGAGCGCCGGGTCACGATTCTGCCGCCGTCCATGGTGGC
back to top