mRNA_S-ischiensis_contig11.2242.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2242.1
Unique NamemRNA_S-ischiensis_contig11.2242.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:2230708..2231565 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size859
Cds size648
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815583.9086096-CDS-S-ischiensis_contig11:2230707..22313551622815583.9086096-CDS-S-ischiensis_contig11:2230707..2231355Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2230708..2231355 +
1695739784.94945-CDS-S-ischiensis_contig11:2230707..22313551695739784.94945-CDS-S-ischiensis_contig11:2230707..2231355Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2230708..2231355 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815583.9201746-UTR-S-ischiensis_contig11:2231355..22315651622815583.9201746-UTR-S-ischiensis_contig11:2231355..2231565Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 2231356..2231565 +
1695739784.9634678-UTR-S-ischiensis_contig11:2231355..22315651695739784.9634678-UTR-S-ischiensis_contig11:2231355..2231565Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 2231356..2231565 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2242.1prot_S-ischiensis_contig11.2242.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 2230708..2231355 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2242.1

>prot_S-ischiensis_contig11.2242.1 ID=prot_S-ischiensis_contig11.2242.1|Name=mRNA_S-ischiensis_contig11.2242.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=216bp
PAVCLELFPVTVVAPVGRCVPPRGGIIGGRDCARCHGGGRLPCVRRNPAI
HSPPKRSHAPEPRGRLQQVPRAVGQHLFLPLPPEPTGLGGRSGTGDCGAT
NCRIRGPGGRRAAQDTIWRAELDSSNVVQVHFLTLRRCRGMCRAFAQDGR
TGLLLRGACAAGLVVQVRERPHVYSCSGHLLLVLQAFQHLFLLKELSSPP
LKLHPVLAQLAVDVA*
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mRNA from alignment at S-ischiensis_contig11:2230708..2231565+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2242.1 ID=mRNA_S-ischiensis_contig11.2242.1|Name=mRNA_S-ischiensis_contig11.2242.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=858bp|location=Sequence derived from alignment at S-ischiensis_contig11:2230708..2231565+ (Schizocladia ischiensis KU_0333)
CCGGCGGTGTGCCTTGAGCTCTTCCCTGTCACCGTCGTCGCCCCAGTCGG
GCGGTGTGTCCCCCCCCGGGGCGGCATCATCGGCGGTCGGGACTGTGCTC
GGTGCCACGGCGGCGGCCGCTTGCCTTGCGTCCGCCGGAACCCCGCAATC
CATTCCCCGCCAAAACGCAGCCATGCGCCCGAACCGCGGGGAAGACTGCA
GCAGGTTCCTCGGGCTGTTGGCCAACACCTGTTCCTGCCCCTGCCCCCAG
AACCAACCGGTCTGGGGGGCCGGAGTGGCACTGGCGATTGCGGGGCCACG
AATTGTCGGATTCGTGGCCCCGGCGGCCGCCGCGCCGCACAAGACACTAT
CTGGAGAGCCGAGCTTGACTCCAGCAATGTCGTCCAAGTACACTTTCTGA
CCCTTCGACGCTGCCGGGGGATGTGCCGTGCCTTTGCCCAGGACGGGAGG
ACTGGCTTGCTCTTGCGGGGAGCATGTGCTGCTGGGCTCGTCGTACAGGT
CCGAGAGAGACCTCATGTATACAGCTGCTCGGGACACCTGCTGCTCGTGC
TCCAAGCATTCCAGCATCTCTTCCTGCTCAAGGAATTGAGCTCGCCACCG
CTGAAGCTGCATCCCGTGCTCGCGCAGCTTGCGGTCGACGTTGCTTAGAA
CAGAGTCGGAAGTCCCCTCCTCTGTGGGGCTCCTTCCCACCCCGTCAGCC
CCGTCCTCCGACGCCCTTGCACTTTCCTCGACCTTTTCATGCTTTCCTCG
CCGGTGAGGCGTAGGAATCTGTTTTCTTGCCCGCAGGCCCACACGGGGAC
AGCCGGCGTAAGCCCTCCTCGCAATGTCGAGTCTCTTGGAACTGGGACTT
GTTTTAAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:2230708..2231565+

>mRNA_S-ischiensis_contig11.2242.1 ID=mRNA_S-ischiensis_contig11.2242.1|Name=mRNA_S-ischiensis_contig11.2242.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1296bp|location=Sequence derived from alignment at S-ischiensis_contig11:2230708..2231565+ (Schizocladia ischiensis KU_0333)
CCGGCGGTGTGCCTTGAGCTCTTCCCTGTCACCGTCGTCGCCCCAGTCGG
GCGGTGTGTCCCCCCCCGGGGCGGCATCATCGGCGGTCGGGACTGTGCTC
GGTGCCACGGCGGCGGCCGCTTGCCTTGCGTCCGCCGGAACCCCGCAATC
CATTCCCCGCCAAAACGCAGCCATGCGCCCGAACCGCGGGGAAGACTGCA
GCAGGTTCCTCGGGCTGTTGGCCAACACCTGTTCCTGCCCCTGCCCCCAG
AACCAACCGGTCTGGGGGGCCGGAGTGGCACTGGCGATTGCGGGGCCACG
AATTGTCGGATTCGTGGCCCCGGCGGCCGCCGCGCCGCACAAGACACTAT
CTGGAGAGCCGAGCTTGACTCCAGCAATGTCGTCCAAGTACACTTTCTGA
CCCTTCGACGCTGCCGGGGGATGTGCCGTGCCTTTGCCCAGGACGGGAGG
ACTGGCTTGCTCTTGCGGGGAGCATGTGCTGCTGGGCTCGTCGTACAGGT
CCGAGAGAGACCTCATGTATACAGCTGCTCGGGACACCTGCTGCTCGTGC
TCCAAGCATTCCAGCATCTCTTCCTGCTCAAGGAATTGAGCTCGCCACCG
CTGAAGCTGCATCCCGTGCTCGCGCAGCTTGCGGTCGACGTTGCTTAGCC
GGCGGTGTGCCTTGAGCTCTTCCCTGTCACCGTCGTCGCCCCAGTCGGGC
GGTGTGTCCCCCCCCGGGGCGGCATCATCGGCGGTCGGGACTGTGCTCGG
TGCCACGGCGGCGGCCGCTTGCCTTGCGTCCGCCGGAACCCCGCAATCCA
TTCCCCGCCAAAACGCAGCCATGCGCCCGAACCGCGGGGAAGACTGCAGC
AGGTTCCTCGGGCTGTTGGCCAACACCTGTTCCTGCCCCTGCCCCCAGAA
CCAACCGGTCTGGGGGGCCGGAGTGGCACTGGCGATTGCGGGGCCACGAA
TTGTCGGATTCGTGGCCCCGGCGGCCGCCGCGCCGCACAAGACACTATCT
GGAGAGCCGAGCTTGACTCCAGCAATGTCGTCCAAGTACACTTTCTGACC
CTTCGACGCTGCCGGGGGATGTGCCGTGCCTTTGCCCAGGACGGGAGGAC
TGGCTTGCTCTTGCGGGGAGCATGTGCTGCTGGGCTCGTCGTACAGGTCC
GAGAGAGACCTCATGTATACAGCTGCTCGGGACACCTGCTGCTCGTGCTC
CAAGCATTCCAGCATCTCTTCCTGCTCAAGGAATTGAGCTCGCCACCGCT
GAAGCTGCATCCCGTGCTCGCGCAGCTTGCGGTCGACGTTGCTTAG
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