mRNA_S-ischiensis_contig11.2227.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2227.1
Unique NamemRNA_S-ischiensis_contig11.2227.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig11.2227.1 vs. uniprot
Match: A0A6H5KF81_9PHAE (Arf-GAP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KF81_9PHAE)

HSP 1 Score: 232 bits (591), Expect = 2.590e-67
Identity = 205/484 (42.36%), Postives = 236/484 (48.76%), Query Frame = 1
Query:   22 SFPFPQVCFDCPTRNPTWASATYGIFICYDCSAVHRSMGVHVTFVRSVELDKWKPHELEVMKLGGNGNARTFFRGHGVTDMGKSEQKYHSRAAQMYRTHLKKLLAE-GAQAPPSPQHKKAVDDLSCGLDRLMRDIGQGEGGGGGEEGGTGPGGEH--------PAPDQRVAALARNELSRDRPQPTQSHSAPPSAMSTPPTSQAGPGAPAPPGSSNGTPEEPTPRGVLVVSPXXXXXXX----EQLKAGGSPPTPVVTLTSKSPPKPGAKKLSAKRPGARKKLGAMKIGGGEGGGGVALSGFDEMPVAGAGXXXXXXXXXXAE----DRKMAEKLQAQENLGGGGQASAPSSRLAAAYEATAVSG--------------------------------------------------------------------AGAAADKYKDVKGIGSDMLFGAKEDDPAEVARRQQKVQQYSGSAAISSDMY 1218
            S P  +VCFDCPTRNPTWASATYGIFICYDCSAVHR+MGVHVTFVRS+ELDKWKP E+EVMK GGNGNAR+FFR HGVTDM KSEQKYHSRAAQMYR HLKK +A+ G   PP    +  VD+++ GLDRLM D+          +G T  G           P+ D   AA A  + ++  P    SH A P++ S      A    PAPP +    P EP PRG L VSP           ++ KA     TPVV L S   P P  +K  AK+                GG  V LSGF++   A   XXXXXXXXXX      D  +A KL                 RLA                                                                              +     KYK+VKGIGSDMLFGAK+DDP E ARR  K Q+YS SAAISSDMY
Sbjct:   20 SKPDNKVCFDCPTRNPTWASATYGIFICYDCSAVHRNMGVHVTFVRSIELDKWKPSEMEVMKRGGNGNARSFFRSHGVTDMEKSEQKYHSRAAQMYRAHLKKAMADPGVVTPPQSPREDPVDNVADGLDRLMEDMDGKPAASAPAKGFTNGGXXXXXXXXXXXPSVD---AAAAAAKFAQAFPS---SHPAAPTSGSAAAGGHAAADVPAPPAAPV-KPYEPKPRGSLSVSPPTAPAAAAGAVDEPKA-----TPVVRLISSKSPPPRIRKGGAKKMXXXXXXXXXXX---SGGAAVKLSGFEDTTTAXXXXXXXXXXXXXXXXXDADLALARKLXXXXXXXXXXXXXXX--RLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSFDKGKYKNVKGIGSDMLFGAKDDDPDEQARRAMKNQEYSQSAAISSDMY 486          
BLAST of mRNA_S-ischiensis_contig11.2227.1 vs. uniprot
Match: A0A835YU03_9STRA (Arf-GAP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU03_9STRA)

HSP 1 Score: 181 bits (460), Expect = 3.290e-52
Identity = 86/135 (63.70%), Postives = 105/135 (77.78%), Query Frame = 1
Query:   37 QVCFDCPTRNPTWASATYGIFICYDCSAVHRSMGVHVTFVRSVELDKWKPHELEVMKLGGNGNARTFFRGHGVTDMGKSEQKYHSRAAQMYRTHLKKLLAE----GAQAPPSPQHKKAVDD--LSCGLDRLMRDI 423
            +VCFDCPTRNPTWAS TYGIF+CYDCSAVHR+MGVH+TFVRSVELDKW+  EL+ MK GGN  AR +F+ HGV+DMGK++ KY SRAA+ YR HLK+L+AE     A    S    +  D+  ++CGLDR+MRDI
Sbjct:   27 KVCFDCPTRNPTWASVTYGIFLCYDCSAVHRNMGVHITFVRSVELDKWRQWELDSMKRGGNAAARAYFQSHGVSDMGKTDAKYRSRAAEAYRAHLKQLIAETPDPAADVWNSAHGARDADEAAIACGLDRIMRDI 161          
BLAST of mRNA_S-ischiensis_contig11.2227.1 vs. uniprot
Match: A0A4D9D0S2_9STRA (Arf-GAP domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D0S2_9STRA)

HSP 1 Score: 174 bits (441), Expect = 7.660e-46
Identity = 85/137 (62.04%), Postives = 100/137 (72.99%), Query Frame = 1
Query:   22 SFPFPQVCFDCPTRNPTWASATYGIFICYDCSAVHRSMGVHVTFVRSVELDKWKPHELEVMKLGGNGNARTFFRGHGVTDMGKSEQKYHSRAAQMYRTHLKKLLAE------GAQAPPSPQHKKAVDDLSCGLDRLM 414
            S P  QVCFDCPTRNPTWASATYG+FICY+CSA HR++GVH+TFVRSV+LD+W P +L  M+LGGN NA  FFR HGVT  GK EQKY SRAA++Y+ HL KL+A+       A  PP P    A   + CGLD LM
Sbjct:   19 SRPENQVCFDCPTRNPTWASATYGVFICYNCSATHRALGVHITFVRSVDLDEWTPQQLLTMRLGGNSNAAQFFRRHGVTHGGKVEQKYSSRAAELYKAHLSKLVADKILMDANALEPPPPTDTVAA--VGCGLDNLM 153          
BLAST of mRNA_S-ischiensis_contig11.2227.1 vs. uniprot
Match: A0A7S3Y2V3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2V3_HETAK)

HSP 1 Score: 166 bits (420), Expect = 8.050e-43
Identity = 82/134 (61.19%), Postives = 100/134 (74.63%), Query Frame = 1
Query:   37 QVCFDCPTRNPTWASATYGIFICYDCSAVHRSMGVHVTFVRSVELDKWKPHELEVMKLGGNGNARTFFRGHGVTDMGKSEQKYHSRAAQMYRTHLKKL----LAEGAQAPPSPQHKKAVDDLSCGLDRLMRDIG 426
            + CFDCPTRNPTWASATYGIFICYDCS+VHR+MGVH+TFVRS +LD+W+P +LE MKLGGNGNA+ +FR HG T   + E+KY  R AQMY+THL KL    L+EG    P P+ K+  D    GLD L+  +G
Sbjct:    6 RTCFDCPTRNPTWASATYGIFICYDCSSVHRNMGVHITFVRSCDLDEWRPDQLERMKLGGNGNAKLYFRQHGNTGK-EGERKYTHRVAQMYKTHLDKLVNQKLSEGNNIEPEPEFKQN-DGSVDGLDALLMGLG 137          
BLAST of mRNA_S-ischiensis_contig11.2227.1 vs. uniprot
Match: A0A7S2SFF1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SFF1_9STRA)

HSP 1 Score: 157 bits (396), Expect = 9.900e-42
Identity = 76/126 (60.32%), Postives = 92/126 (73.02%), Query Frame = 1
Query:   37 QVCFDCPTRNPTWASATYGIFICYDCSAVHRSMGVHVTFVRSVELDKWKPHELEVMKLGGNGNARTFFRGHGVTDMG-KSEQKYHSRAAQMYRTHLKKLLAEGAQAPPSPQHKKAVDDLSCGLDRL 411
            ++CFDCPTRNPTWASAT+G+F+C DCSA HR MGVHVTFVRSVELD+W   +L  M++GGNGNA  FFR HGV D+  K+E+KY S AA+ Y+ HLKKLL E   APP P   + V   +   D L
Sbjct:   35 RICFDCPTRNPTWASATFGVFLCLDCSAAHRRMGVHVTFVRSVELDEWTEKQLRTMEVGGNGNAAAFFRSHGVRDLHIKTEEKYQSSAARHYKNHLKKLLEE---APPKPIETQDVGAKTGATDPL 157          
BLAST of mRNA_S-ischiensis_contig11.2227.1 vs. uniprot
Match: A0A7S2B6H1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B6H1_9STRA)

HSP 1 Score: 161 bits (408), Expect = 2.350e-41
Identity = 80/132 (60.61%), Postives = 99/132 (75.00%), Query Frame = 1
Query:   37 QVCFDCPTRNPTWASATYGIFICYDCSAVHRSMGVHVTFVRSVELDKWKPHELEVMKLGGNGNARTFFRGHGVTDMG-KSEQKYHSRAAQMYRTHLKKLLA--EGAQAPPSPQHKKAVDDLSCGLDRLMRDI 423
            +VCFDC +RNPTWASAT+GIFIC DCSA HR MGVH+TFVRSVELD+W P +L++MK+GGN NA TFFR HGV DM  K EQKY S AA+ Y+ HLKKL++  +  + P  PQ K +VD     +D L+ D+
Sbjct:   25 KVCFDCSSRNPTWASATFGIFICLDCSASHRRMGVHITFVRSVELDEWTPDQLKMMKVGGNENAGTFFRSHGVRDMHIKHEQKYVSSAARQYKNHLKKLMSTEDVEEVPEEPQRKPSVD-----IDSLLLDV 151          
BLAST of mRNA_S-ischiensis_contig11.2227.1 vs. uniprot
Match: A0A7S1CBA6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CBA6_9STRA)

HSP 1 Score: 144 bits (362), Expect = 9.700e-38
Identity = 69/137 (50.36%), Postives = 95/137 (69.34%), Query Frame = 1
Query:   22 SFPFPQVCFDCPTRNPTWASATYGIFICYDCSAVHRSMGVHVTFVRSVELDKWKPHELEVMKLGGNGNARTFFRGHGVTDM--GKSEQKYHSRAAQMYRTHLKKLLAEGAQAPPSPQHKKAVDDLSC-GLDRLMRDI 423
            + P   VCFDC  RNP+WASAT+G+FIC  CSA HR MGVH++FVRS +LDKW P ++E+M++GGN NA  FF+  G +D   GK E+KYHSRAA +Y+ HL++L+ + +  P SP+   A +  +  GLD L   +
Sbjct:   16 ALPGNNVCFDCGARNPSWASATFGVFICIGCSATHRRMGVHISFVRSCDLDKWTPDQMELMRIGGNANAAKFFKTKGWSDATGGKHEEKYHSRAANLYKQHLQRLV-QTSSTPASPEAASAPEGFTIDGLDDLELSV 151          
BLAST of mRNA_S-ischiensis_contig11.2227.1 vs. uniprot
Match: A0A7S1CAZ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CAZ9_9STRA)

HSP 1 Score: 144 bits (362), Expect = 9.700e-38
Identity = 68/132 (51.52%), Postives = 94/132 (71.21%), Query Frame = 1
Query:   37 QVCFDCPTRNPTWASATYGIFICYDCSAVHRSMGVHVTFVRSVELDKWKPHELEVMKLGGNGNARTFFRGHGVTDM--GKSEQKYHSRAAQMYRTHLKKLLAEGAQAPPSPQHKKAVDDLSC-GLDRLMRDI 423
            +VCFDC  RNP+WASAT+G+FIC  CSA HR MGVH++FVRS +LDKW P ++E+M++GGN NA  FF+  G +D   GK E+KYHSRAA +Y+ HL++L+ + +  P SP+   A +  +  GLD L   +
Sbjct:   21 RVCFDCGARNPSWASATFGVFICIGCSATHRRMGVHISFVRSCDLDKWTPDQMELMRIGGNANAAKFFKTKGWSDATGGKHEEKYHSRAANLYKQHLQRLV-QTSSTPASPEAASAPEGFTIDGLDDLELSV 151          
BLAST of mRNA_S-ischiensis_contig11.2227.1 vs. uniprot
Match: A0A444EK15_ENSVE (Arf-GAP domain-containing protein n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A444EK15_ENSVE)

HSP 1 Score: 144 bits (363), Expect = 1.180e-37
Identity = 71/125 (56.80%), Postives = 86/125 (68.80%), Query Frame = 1
Query:   40 VCFDCPTRNPTWASATYGIFICYDCSAVHRSMGVHVTFVRSVELDKWKPHELEVMKLGGNGNARTFFRGHGVTDMGKSEQKYHSRAAQMYRTHLKKLLAEG-AQAPPSPQHKKAVDDLSCGLDRL 411
            +CFDC  +NPTWAS TYGIF+C DCSAVHRS+GVHV+FVRS  LD W P +L+VM  GGN  A+ FF+ HG TD GK E KY SRAA++YR  L K +A+  A+A   P    A    S  +DRL
Sbjct:    1 MCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHVSFVRSTNLDSWNPEQLKVMVFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYRQILSKEVAKSFAEANVLPSSPVATSHTSDAVDRL 125          
BLAST of mRNA_S-ischiensis_contig11.2227.1 vs. uniprot
Match: A0A7S3HR90_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HR90_9STRA)

HSP 1 Score: 149 bits (377), Expect = 3.970e-37
Identity = 74/132 (56.06%), Postives = 95/132 (71.97%), Query Frame = 1
Query:   37 QVCFDCPTRNPTWASATYGIFICYDCSAVHRSMGVHVTFVRSVELDKWKPHELEVMKLGGNGNARTFFRGHGVTD--MGKSEQKYHSRAAQMYRTHLKKLLAEGAQAPPSPQHKKAVDDLSC-GLDRLMRDI 423
            +VCFDC  RNP+WAS TYG+FIC DCSAVHR +GVH+TFVRS +LD+W   +L++M++ GNGNAR FF+ HGVTD  MG SE+KY S+AA  Y  HL+KLL +G Q   S    + V+D    GLD L+  +
Sbjct:   27 KVCFDCSARNPSWASVTYGVFICLDCSAVHRRLGVHITFVRSCDLDEWTQEQLDIMRVSGNGNAREFFKKHGVTDAQMG-SEKKYSSKAAPEYLKHLQKLLHDGPQTLRSRSRSEDVNDNHAKGLDGLINSL 157          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2227.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KF81_9PHAE2.590e-6742.36Arf-GAP domain-containing protein n=2 Tax=Ectocarp... [more]
A0A835YU03_9STRA3.290e-5263.70Arf-GAP domain-containing protein n=1 Tax=Tribonem... [more]
A0A4D9D0S2_9STRA7.660e-4662.04Arf-GAP domain-containing protein n=2 Tax=Monodops... [more]
A0A7S3Y2V3_HETAK8.050e-4361.19Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2SFF1_9STRA9.900e-4260.32Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2B6H1_9STRA2.350e-4160.61Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1CBA6_9STRA9.700e-3850.36Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S1CAZ9_9STRA9.700e-3851.52Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A444EK15_ENSVE1.180e-3756.80Arf-GAP domain-containing protein n=1 Tax=Ensete v... [more]
A0A7S3HR90_9STRA3.970e-3756.06Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:2126043..2127430 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score240.4
Seed ortholog evalue1.5e-60
Seed eggNOG ortholog2880.D8LT65
Preferred nameARFGAP2
KEGG koko:K11855,ko:K12493,ko:K16682
KEGG Pathwayko04144,ko04390,ko04391,ko04392,map04144,map04390,map04391,map04392
GOsGO:0001654,GO:0001745,GO:0002790,GO:0003674,GO:0005096,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005793,GO:0005794,GO:0005798,GO:0005829,GO:0005886,GO:0006810,GO:0006886,GO:0006888,GO:0006890,GO:0006900,GO:0006901,GO:0006903,GO:0006996,GO:0007275,GO:0007423,GO:0008047,GO:0008104,GO:0008150,GO:0008565,GO:0009306,GO:0009653,GO:0009887,GO:0009987,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0030117,GO:0030120,GO:0030126,GO:0030135,GO:0030137,GO:0030234,GO:0030659,GO:0030660,GO:0030662,GO:0030663,GO:0030695,GO:0031090,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0032940,GO:0032991,GO:0033036,GO:0034613,GO:0035964,GO:0042886,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0044093,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046903,GO:0046907,GO:0048193,GO:0048194,GO:0048199,GO:0048200,GO:0048205,GO:0048475,GO:0048513,GO:0048592,GO:0048731,GO:0048749,GO:0048856,GO:0050790,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0060589,GO:0061024,GO:0065007,GO:0065009,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0090596,GO:0097708,GO:0098588,GO:0098772,GO:0098796,GO:0098805
EggNOG free text desc.GTPase activator activity
EggNOG OGsCOG5347@1,KOG0706@2759
EC3.4.19.12
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko03019,ko03036,ko04121,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionArf GTPase activating protein
Ec32 orthologEc-12_005420.1
Exons2
Model size1221
Cds size1221
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815607.9034302-CDS-S-ischiensis_contig11:2126042..21261831622815607.9034302-CDS-S-ischiensis_contig11:2126042..2126183Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2126043..2126183 -
1695739800.3834574-CDS-S-ischiensis_contig11:2126042..21261831695739800.3834574-CDS-S-ischiensis_contig11:2126042..2126183Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2126043..2126183 -
1622815607.9146264-CDS-S-ischiensis_contig11:2126350..21274301622815607.9146264-CDS-S-ischiensis_contig11:2126350..2127430Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2126351..2127430 -
1695739800.3964453-CDS-S-ischiensis_contig11:2126350..21274301695739800.3964453-CDS-S-ischiensis_contig11:2126350..2127430Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2126351..2127430 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2227.1prot_S-ischiensis_contig11.2227.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 2126043..2127430 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2227.1

>prot_S-ischiensis_contig11.2227.1 ID=prot_S-ischiensis_contig11.2227.1|Name=mRNA_S-ischiensis_contig11.2227.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=407bp
MQGLSSPSFPFPQVCFDCPTRNPTWASATYGIFICYDCSAVHRSMGVHVT
FVRSVELDKWKPHELEVMKLGGNGNARTFFRGHGVTDMGKSEQKYHSRAA
QMYRTHLKKLLAEGAQAPPSPQHKKAVDDLSCGLDRLMRDIGQGEGGGGG
EEGGTGPGGEHPAPDQRVAALARNELSRDRPQPTQSHSAPPSAMSTPPTS
QAGPGAPAPPGSSNGTPEEPTPRGVLVVSPPPPPAGAEQLKAGGSPPTPV
VTLTSKSPPKPGAKKLSAKRPGARKKLGAMKIGGGEGGGGVALSGFDEMP
VAGAGATAAAAAEQEAEDRKMAEKLQAQENLGGGGQASAPSSRLAAAYEA
TAVSGAGAAADKYKDVKGIGSDMLFGAKEDDPAEVARRQQKVQQYSGSAA
ISSDMYF
back to top

mRNA from alignment at S-ischiensis_contig11:2126043..2127430-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2227.1 ID=mRNA_S-ischiensis_contig11.2227.1|Name=mRNA_S-ischiensis_contig11.2227.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1388bp|location=Sequence derived from alignment at S-ischiensis_contig11:2126043..2127430- (Schizocladia ischiensis KU_0333)
ATGCAAGGCCTTTCGTCTCCCTCTTTCCCCTTCCCGCAGGTGTGCTTTGA CTGCCCCACGCGCAACCCGACCTGGGCGTCGGCGACGTACGGCATCTTCA TCTGCTACGACTGCTCGGCCGTGCACCGCTCGATGGGGGTCCATGTGACC TTCGTGCGCAGCGTGGAGCTGGACAAGTGGAAGCCGCACGAGCTTGAGGT GATGAAGCTAGGGGGCAACGGCAACGCGCGCACCTTCTTCCGCGGCCACG GGGTGACGGACATGGGCAAGTCGGAGCAGAAATACCACTCCCGCGCCGCG CAGATGTACCGCACGCACCTCAAGAAGCTCCTCGCGGAGGGCGCGCAGGC CCCGCCCTCCCCCCAGCACAAGAAGGCGGTCGACGACTTGTCGTGCGGGC TGGACCGCCTGATGCGGGACATCGGGCAGGGCGAGGGGGGCGGCGGCGGG GAGGAGGGAGGGACGGGCCCTGGCGGAGAACATCCCGCGCCCGACCAGCG CGTTGCAGCCCTGGCCCGCAACGAGCTGTCCCGTGACCGCCCACAGCCCA CCCAGTCCCACTCCGCCCCGCCCTCTGCCATGAGCACGCCCCCCACCAGC CAGGCCGGCCCCGGCGCCCCGGCCCCGCCGGGGTCCTCCAACGGCACTCC CGAGGAGCCCACACCCCGCGGTGTGCTTGTCGTGTCCCCTCCTCCGCCGC CGGCGGGGGCGGAGCAGCTCAAGGCAGGCGGGTCGCCGCCGACGCCGGTG GTGACGCTCACCTCCAAATCCCCGCCCAAGCCGGGGGCCAAGAAGCTGAG CGCCAAGAGGCCCGGGGCCCGAAAGAAGCTGGGCGCGATGAAGATTGGCG GCGGCGAGGGGGGTGGTGGTGTCGCACTCTCGGGCTTCGACGAGATGCCC GTGGCCGGGGCTGGGGCCACCGCCGCCGCCGCCGCCGAGCAGGAGGCCGA GGACCGGAAAATGGCGGAGAAGCTCCAAGCGCAGGAGAACTTGGGAGGCG GTGGGCAGGCGTCCGCCCCCTCGTCCCGGCTCGCGGCGGCGTACGAAGCC ACGGCGGTTTCGGGCGCGGGCGCCGCTGCTGTGACCGCCAATGCCTCCCG GCAGGGCAAGCCCCCCGCCGCGGGGTCCATGTACCGCTCCGCGAATGACA CAGGGGCAGGGGCGGGGTCGTCCATGTACGGGAATGGGCACGGGCCGGGC TACCGGGGGCTCGTGGGGGCAGGGGGCTGGGGGAAGCGTTTGACAAGGAT AAGTACAAGGACGTGAAGGGGATCGGGTCCGATATGCTGTTTGGAGCCAA GGAGGATGACCCGGCGGAGGTGGCGCGACGGCAGCAGAAGGTGCAGCAGT ATAGCGGCTCGGCGGCCATTAGCAGCGACATGTACTTT
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig11:2126043..2127430-

>mRNA_S-ischiensis_contig11.2227.1 ID=mRNA_S-ischiensis_contig11.2227.1|Name=mRNA_S-ischiensis_contig11.2227.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2442bp|location=Sequence derived from alignment at S-ischiensis_contig11:2126043..2127430- (Schizocladia ischiensis KU_0333)
ATGCAAGGCCTTTCGTCTCCCTCTTTCCCCTTCCCGCAGGTGTGCTTTGA
CTGCCCCACGCGCAACCCGACCTGGGCGTCGGCGACGTACGGCATCTTCA
TCTGCTACGACTGCTCGGCCGTGCACCGCTCGATGGGGGTCCATGTGACC
TTCGTGCGCAGCGTGGAGCTGGACAAGTGGAAGCCGCACGAGCTTGAGGT
GATGAAGCTAGGGGGCAACGGCAACGCGCGCACCTTCTTCCGCGGCCACG
GGGTGACGGACATGGGCAAGTCGGAGCAGAAATACCACTCCCGCGCCGCG
CAGATGTACCGCACGCACCTCAAGAAGCTCCTCGCGGAGGGCGCGCAGGC
CCCGCCCTCCCCCCAGCACAAGAAGGCGGTCGACGACTTGTCGTGCGGGC
TGGACCGCCTGATGCGGGACATCGGGCAGGGCGAGGGGGGCGGCGGCGGG
GAGGAGGGAGGGACGGGCCCTGGCGGAGAACATCCCGCGCCCGACCAGCG
CGTTGCAGCCCTGGCCCGCAACGAGCTGTCCCGTGACCGCCCACAGCCCA
CCCAGTCCCACTCCGCCCCGCCCTCTGCCATGAGCACGCCCCCCACCAGC
CAGGCCGGCCCCGGCGCCCCGGCCCCGCCGGGGTCCTCCAACGGCACTCC
CGAGGAGCCCACACCCCGCGGTGTGCTTGTCGTGTCCCCTCCTCCGCCGC
CGGCGGGGGCGGAGCAGCTCAAGGCAGGCGGGTCGCCGCCGACGCCGGTG
GTGACGCTCACCTCCAAATCCCCGCCCAAGCCGGGGGCCAAGAAGCTGAG
CGCCAAGAGGCCCGGGGCCCGAAAGAAGCTGGGCGCGATGAAGATTGGCG
GCGGCGAGGGGGGTGGTGGTGTCGCACTCTCGGGCTTCGACGAGATGCCC
GTGGCCGGGGCTGGGGCCACCGCCGCCGCCGCCGCCGAGCAGGAGGCCGA
GGACCGGAAAATGGCGGAGAAGCTCCAAGCGCAGGAGAACTTGGGAGGCG
GTGGGCAGGCGTCCGCCCCCTCGTCCCGGCTCGCGGCGGCGTACGAAGCC
ACGGCGGTTTCGGGCGCGGGCGCCGCTGCTATGCAAGGCCTTTCGTCTCC
CTCTTTCCCCTTCCCGCAGGTGTGCTTTGACTGCCCCACGCGCAACCCGA
CCTGGGCGTCGGCGACGTACGGCATCTTCATCTGCTACGACTGCTCGGCC
GTGCACCGCTCGATGGGGGTCCATGTGACCTTCGTGCGCAGCGTGGAGCT
GGACAAGTGGAAGCCGCACGAGCTTGAGGTGATGAAGCTAGGGGGCAACG
GCAACGCGCGCACCTTCTTCCGCGGCCACGGGGTGACGGACATGGGCAAG
TCGGAGCAGAAATACCACTCCCGCGCCGCGCAGATGTACCGCACGCACCT
CAAGAAGCTCCTCGCGGAGGGCGCGCAGGCCCCGCCCTCCCCCCAGCACA
AGAAGGCGGTCGACGACTTGTCGTGCGGGCTGGACCGCCTGATGCGGGAC
ATCGGGCAGGGCGAGGGGGGCGGCGGCGGGGAGGAGGGAGGGACGGGCCC
TGGCGGAGAACATCCCGCGCCCGACCAGCGCGTTGCAGCCCTGGCCCGCA
ACGAGCTGTCCCGTGACCGCCCACAGCCCACCCAGTCCCACTCCGCCCCG
CCCTCTGCCATGAGCACGCCCCCCACCAGCCAGGCCGGCCCCGGCGCCCC
GGCCCCGCCGGGGTCCTCCAACGGCACTCCCGAGGAGCCCACACCCCGCG
GTGTGCTTGTCGTGTCCCCTCCTCCGCCGCCGGCGGGGGCGGAGCAGCTC
AAGGCAGGCGGGTCGCCGCCGACGCCGGTGGTGACGCTCACCTCCAAATC
CCCGCCCAAGCCGGGGGCCAAGAAGCTGAGCGCCAAGAGGCCCGGGGCCC
GAAAGAAGCTGGGCGCGATGAAGATTGGCGGCGGCGAGGGGGGTGGTGGT
GTCGCACTCTCGGGCTTCGACGAGATGCCCGTGGCCGGGGCTGGGGCCAC
CGCCGCCGCCGCCGCCGAGCAGGAGGCCGAGGACCGGAAAATGGCGGAGA
AGCTCCAAGCGCAGGAGAACTTGGGAGGCGGTGGGCAGGCGTCCGCCCCC
TCGTCCCGGCTCGCGGCGGCGTACGAAGCCACGGCGGTTTCGGGCGCGGG
CGCCGCTGCTGATAAGTACAAGGACGTGAAGGGGATCGGGTCCGATATGC
TGTTTGGAGCCAAGGAGGATGACCCGGCGGAGGTGGCGCGACGGCAGCAG
AAGGTGCAGCAGTATAGCGGCTCGGCGGCCATTAGCAGCGACATGTACTT
TGATAAGTACAAGGACGTGAAGGGGATCGGGTCCGATATGCTGTTTGGAG
CCAAGGAGGATGACCCGGCGGAGGTGGCGCGACGGCAGCAGAAGGTGCAG
CAGTATAGCGGCTCGGCGGCCATTAGCAGCGACATGTACTTT
back to top