mRNA_S-ischiensis_contig11.2222.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2222.1
Unique NamemRNA_S-ischiensis_contig11.2222.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:2099185..2099973 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size790
Cds size762
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815583.8367577-UTR-S-ischiensis_contig11:2099184..20992111622815583.8367577-UTR-S-ischiensis_contig11:2099184..2099211Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 2099185..2099211 +
1695739784.8753476-UTR-S-ischiensis_contig11:2099184..20992111695739784.8753476-UTR-S-ischiensis_contig11:2099184..2099211Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 2099185..2099211 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815583.849599-CDS-S-ischiensis_contig11:2099211..20999731622815583.849599-CDS-S-ischiensis_contig11:2099211..2099973Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2099212..2099973 +
1695739784.884788-CDS-S-ischiensis_contig11:2099211..20999731695739784.884788-CDS-S-ischiensis_contig11:2099211..2099973Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2099212..2099973 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2222.1prot_S-ischiensis_contig11.2222.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 2099212..2099973 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2222.1

>prot_S-ischiensis_contig11.2222.1 ID=prot_S-ischiensis_contig11.2222.1|Name=mRNA_S-ischiensis_contig11.2222.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=254bp
MQHNYGYTGAGESPPRSPWKSYAGFAYEHAEESLPEELEGHSARMYQHQI
PQPVDPRAHGFPHPAHQDRHHHQHPRHHLQAPPHHPHIAGPPRPPGRSGR
PPHHAPPPPPQLQQQHHHLHHHNSHQLHQQPRQQPRQQHQQHDESLQHHL
RAQGRGFSLKVHAAEFVPGKRASGPGSTSPWGELKPHAREFVPGGDSKSS
KRNNLPTSASSGDLKAHAPEFIPGGSAVEASGTAAAAAAIPAEDEGERGR
KDGE
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mRNA from alignment at S-ischiensis_contig11:2099185..2099973+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2222.1 ID=mRNA_S-ischiensis_contig11.2222.1|Name=mRNA_S-ischiensis_contig11.2222.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=789bp|location=Sequence derived from alignment at S-ischiensis_contig11:2099185..2099973+ (Schizocladia ischiensis KU_0333)
CTCTTTTGTACAGCGCTTGCAGCTGTGATGCAGCATAACTACGGCTACAC
AGGTGCAGGGGAGAGTCCACCCCGGAGCCCATGGAAGTCTTATGCGGGGT
TTGCGTACGAGCATGCGGAAGAGAGTTTGCCAGAGGAGTTAGAGGGACAC
AGCGCGCGGATGTATCAGCACCAAATCCCACAGCCCGTGGACCCGCGCGC
CCACGGTTTCCCACACCCCGCCCACCAAGATCGACACCACCACCAACATC
CCCGCCACCATCTCCAGGCCCCCCCTCACCACCCGCACATTGCGGGCCCA
CCACGCCCACCTGGCCGATCAGGTCGCCCTCCTCACCACGCCCCGCCGCC
GCCGCCGCAGCTGCAGCAGCAGCATCACCACCTTCACCACCACAATTCCC
ACCAGCTGCATCAGCAGCCGCGGCAGCAGCCGCGGCAGCAGCACCAGCAG
CACGACGAAAGCCTGCAGCACCACCTCCGGGCCCAGGGTCGCGGTTTCTC
CCTGAAGGTTCACGCGGCCGAGTTCGTGCCCGGAAAGCGTGCGTCTGGGC
CCGGGTCCACCTCGCCATGGGGGGAGCTGAAGCCGCACGCACGGGAGTTT
GTGCCAGGGGGGGACAGCAAAAGCAGCAAACGGAATAATCTCCCTACGTC
TGCTTCGTCAGGGGACCTCAAGGCGCACGCGCCCGAGTTCATCCCGGGGG
GCTCCGCTGTCGAGGCATCTGGCACGGCGGCGGCGGCGGCGGCAATACCG
GCGGAAGACGAGGGAGAGAGGGGGCGCAAGGACGGCGAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:2099185..2099973+

>mRNA_S-ischiensis_contig11.2222.1 ID=mRNA_S-ischiensis_contig11.2222.1|Name=mRNA_S-ischiensis_contig11.2222.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1524bp|location=Sequence derived from alignment at S-ischiensis_contig11:2099185..2099973+ (Schizocladia ischiensis KU_0333)
ATGCAGCATAACTACGGCTACACAGGTGCAGGGGAGAGTCCACCCCGGAG
CCCATGGAAGTCTTATGCGGGGTTTGCGTACGAGCATGCGGAAGAGAGTT
TGCCAGAGGAGTTAGAGGGACACAGCGCGCGGATGTATCAGCACCAAATC
CCACAGCCCGTGGACCCGCGCGCCCACGGTTTCCCACACCCCGCCCACCA
AGATCGACACCACCACCAACATCCCCGCCACCATCTCCAGGCCCCCCCTC
ACCACCCGCACATTGCGGGCCCACCACGCCCACCTGGCCGATCAGGTCGC
CCTCCTCACCACGCCCCGCCGCCGCCGCCGCAGCTGCAGCAGCAGCATCA
CCACCTTCACCACCACAATTCCCACCAGCTGCATCAGCAGCCGCGGCAGC
AGCCGCGGCAGCAGCACCAGCAGCACGACGAAAGCCTGCAGCACCACCTC
CGGGCCCAGGGTCGCGGTTTCTCCCTGAAGGTTCACGCGGCCGAGTTCGT
GCCCGGAAAGCGTGCGTCTGGGCCCGGGTCCACCTCGCCATGGGGGGAGC
TGAAGCCGCACGCACGGGAGTTTGTGCCAGGGGGGGACAGCAAAAGCAGC
AAACGGAATAATCTCCCTACGTCTGCTTCGTCAGGGGACCTCAAGGCGCA
CGCGCCCGAGTTCATCCCGGGGGGCTCCGCTGTCGAGGCATCTGGCACGG
CGGCGGCGGCGGCGGCAATACCGGCGGAAGACGAGGGAGAGAGGGGGCGC
AAGGACGGCGAGATGCAGCATAACTACGGCTACACAGGTGCAGGGGAGAG
TCCACCCCGGAGCCCATGGAAGTCTTATGCGGGGTTTGCGTACGAGCATG
CGGAAGAGAGTTTGCCAGAGGAGTTAGAGGGACACAGCGCGCGGATGTAT
CAGCACCAAATCCCACAGCCCGTGGACCCGCGCGCCCACGGTTTCCCACA
CCCCGCCCACCAAGATCGACACCACCACCAACATCCCCGCCACCATCTCC
AGGCCCCCCCTCACCACCCGCACATTGCGGGCCCACCACGCCCACCTGGC
CGATCAGGTCGCCCTCCTCACCACGCCCCGCCGCCGCCGCCGCAGCTGCA
GCAGCAGCATCACCACCTTCACCACCACAATTCCCACCAGCTGCATCAGC
AGCCGCGGCAGCAGCCGCGGCAGCAGCACCAGCAGCACGACGAAAGCCTG
CAGCACCACCTCCGGGCCCAGGGTCGCGGTTTCTCCCTGAAGGTTCACGC
GGCCGAGTTCGTGCCCGGAAAGCGTGCGTCTGGGCCCGGGTCCACCTCGC
CATGGGGGGAGCTGAAGCCGCACGCACGGGAGTTTGTGCCAGGGGGGGAC
AGCAAAAGCAGCAAACGGAATAATCTCCCTACGTCTGCTTCGTCAGGGGA
CCTCAAGGCGCACGCGCCCGAGTTCATCCCGGGGGGCTCCGCTGTCGAGG
CATCTGGCACGGCGGCGGCGGCGGCGGCAATACCGGCGGAAGACGAGGGA
GAGAGGGGGCGCAAGGACGGCGAG
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