mRNA_S-ischiensis_contig11.2219.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2219.1
Unique NamemRNA_S-ischiensis_contig11.2219.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig11.2219.1 vs. uniprot
Match: A0A6H5KCH1_9PHAE (Mitochondrial inner membrane protease ATP23 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KCH1_9PHAE)

HSP 1 Score: 215 bits (548), Expect = 1.660e-62
Identity = 103/176 (58.52%), Postives = 127/176 (72.16%), Query Frame = 1
Query:  175 KVKFMIEHIEKLGCVLPPDMFTCRPCGEAQASGGWVFDNK-VEGE-FKPQVVLCEDKPLTQTMVNHTLAHELIHAFDQCRNKVNWNNCLHHACSEIRAANTSGECGYWQEFLRGHPEWGGQQQVCVKRRAELSLKGNPACAHKVRGGLPAFVQAREYVQAAFKSCYYDTEPYDKNP 696
            KVKF+ E +EKLGC +P  MFTCRPC     SGG++   K  +G+  + +VVLC DK + QTM++HT+AHELIHA+DQCR K++  NCLH AC+EIRA+NTSGEC +  E  RGH +WGGQQ+ CVKRRAELS+K  P C+ K          A EYV +AFK CYYDTEPYDKNP
Sbjct:   43 KVKFIREKLEKLGCEMPTGMFTCRPCEGMDISGGFIPPTKGADGKPSRAEVVLCSDKGVNQTMMDHTMAHELIHAYDQCRVKLDRTNCLHVACTEIRASNTSGECSFDMEVRRGHLKWGGQQKECVKRRAELSVKATPGCSDK----------AAEYVNSAFKPCYYDTEPYDKNP 208          
BLAST of mRNA_S-ischiensis_contig11.2219.1 vs. uniprot
Match: L1ITR7_GUITC (Mitochondrial inner membrane protease ATP23 n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1ITR7_GUITC)

HSP 1 Score: 158 bits (400), Expect = 1.380e-41
Identity = 81/173 (46.82%), Postives = 103/173 (59.54%), Query Frame = 1
Query:  178 VKFMIEHIEKLGCVLPPDMFTCRPCGEAQASGGWVFDNKVEGEFKPQVVLCEDKPLTQTMVNHTLAHELIHAFDQCRNKVNWNNCLHHACSEIRAANTSGECGYWQEFLRGHPEWGGQQQVCVKRRAELSLKGNPACAHKVRGGLPAFVQAREYVQAAFKSCYYDTEPYDKNP 696
            VKFM+EH+ K GC +    F  R C E    G   FD     +    VVLCE+          T+ HELIHA+D CR  V+W NC+HHACSEIRAAN SG+C +WQE LRG+  + GQ + C+KRRA LS+  NPAC+        A   A+E V+ AF+ CY DT P+D+ P
Sbjct:   21 VKFMMEHMAKRGCPVDESFFVVRHCDEKVGGG---FDESASRQGG--VVLCENHLRNYAHTEMTMTHELIHAYDHCRAFVDWTNCVHHACSEIRAANLSGDCKWWQEILRGNTAFLGQGRACIKRRAALSVSMNPACS--------APGVAQEAVEKAFERCYADTSPFDRVP 180          
BLAST of mRNA_S-ischiensis_contig11.2219.1 vs. uniprot
Match: W7TN46_9STRA (Mitochondrial inner membrane protease ATP23 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TN46_9STRA)

HSP 1 Score: 160 bits (404), Expect = 1.490e-41
Identity = 80/177 (45.20%), Postives = 113/177 (63.84%), Query Frame = 1
Query:  175 KVKFMIEHIEKLGCVLPPD-MFTCRPCGEAQASGGWVFDNK--VEGEFKPQVVLCEDKPLTQTMVNHTLAHELIHAFDQCRNKVNWNNCLHHACSEIRAANTSGECGYWQEFLRGHPEWGGQQQVCVKRRAELSLKGNPACAHKVRGGLPAFVQAREYVQAAFKSCYYDTEPYDKNP 696
            +V+ ++  I  LGC +  D M  CR C  A A+GG++ +++   EGE++P++V+CED  L    V  TLAHEL+HA+DQCR KVNW +C H+AC+EIRA+  SGEC + +EF RG+     Q Q CV+RRAELS++   +C  +          A+E ++  FK CY DT PYDK P
Sbjct:   61 RVRELVGAISDLGCTIDIDTMVECRQCNIA-ATGGFIANHQGLKEGEYRPRIVVCEDNLLGSHYVAQTLAHELVHAYDQCRAKVNWQSCYHYACTEIRASTLSGECDFIEEFDRGNFGMRAQHQECVRRRAELSMQVAESCKDR----------AKEVIEKVFKRCYQDTAPYDKIP 226          
BLAST of mRNA_S-ischiensis_contig11.2219.1 vs. uniprot
Match: A0A835Z5N3_9STRA (Mitochondrial inner membrane protease ATP23 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5N3_9STRA)

HSP 1 Score: 152 bits (385), Expect = 2.920e-39
Identity = 79/181 (43.65%), Postives = 114/181 (62.98%), Query Frame = 1
Query:  175 KVKFMIEHIEKLGCVLPPDMFTCRPCGEAQASGGWVFD-----NKVEGEFKPQVVLCEDKPLT--QTMVNHTLAHELIHAFDQCRNKVNWNNCLHHACSEIRAANTSGECGYWQEFLRGHPEWGGQQQVCVKRRAELSLKGNPACAHKVRGGLPAFVQAREYVQAAFKSCYYDTEPYDKNP 696
            +V F+   IEK+GC LP +   CR C E+  +GG+  +     ++  G+ +P ++LCE+  +   Q +V+ TLAHEL+HAFD CR K ++ NCLHHAC+EIRA+N SGEC +  E+ RG+     QQ+ CVKRRA LSL  NP+C    +G      Q ++++ AA+  C  D EP+D NP
Sbjct:   27 RVTFLKAAIEKMGCKLPDESIECRRCDESM-TGGFTLNAEAGASQQGGKPQPTIILCEEVQIMRQQRVVDSTLAHELVHAFDACRVKADFTNCLHHACTEIRASNLSGECAWKMEWDRGNVAITRQQEKCVKRRAALSLAANPSC----KG------QEQQFIDAAWPFCSRDDEPFDANP 196          
BLAST of mRNA_S-ischiensis_contig11.2219.1 vs. uniprot
Match: M2X4K8_GALSU (Mitochondrial inner membrane protease ATP23 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2X4K8_GALSU)

HSP 1 Score: 150 bits (378), Expect = 7.410e-39
Identity = 78/170 (45.88%), Postives = 101/170 (59.41%), Query Frame = 1
Query:  187 MIEHIEKLGCVLPPDMFTCRPCGEAQASGGWVFDNKVEGEFKPQVVLCEDKPLTQTMVNHTLAHELIHAFDQCRNKVNWNNCLHHACSEIRAANTSGECGYWQEFLRGHPEWGGQQQVCVKRRAELSLKGNPACAHKVRGGLPAFVQAREYVQAAFKSCYYDTEPYDKNP 696
            M+E I K GC LP +   C+ C EA   GG+  D  V        VLC +  L+Q   N TL HEL+HAFDQCR  VNW++C HHACSEIRAA  SG+C + +EF RGH     Q Q C++RRAE+S++ NP C+          +QA+E V  A+  C+ DT P+D  P
Sbjct:    1 MLEQIRKAGCYLPEERILCQYC-EAAVGGGFQDDGSV--------VLCSNHLLSQDHANITLVHELVHAFDQCRAHVNWSDCTHHACSEIRAALLSGDCDWKREFWRGHLGLRAQFQKCIRRRAEISVRMNPNCSP---------LQAKEAVNRAWDICFADTAPFDGIP 152          
BLAST of mRNA_S-ischiensis_contig11.2219.1 vs. uniprot
Match: A0A3R7KD77_9STRA (Mitochondrial inner membrane protease ATP23 n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KD77_9STRA)

HSP 1 Score: 151 bits (382), Expect = 7.700e-39
Identity = 75/174 (43.10%), Postives = 107/174 (61.49%), Query Frame = 1
Query:  175 KVKFMIEHIEKLGCVLPPDMFTCRPCGEAQASGGWVFDNKVEGEFKPQVVLCEDKPLTQTMVNHTLAHELIHAFDQCRNKVNWNNCLHHACSEIRAANTSGECGYWQEFLRGHPEWGGQQQVCVKRRAELSLKGNPACAHKVRGGLPAFVQAREYVQAAFKSCYYDTEPYDKNP 696
            +VKF+++ +EK+GC +    F+   C E + +GG+  D+K     KP VVLC++    Q  ++ T+AHELIHA+D CRNK++WNNC HHACSEIRAA  SG+C +  EF R +     Q Q+C +RRA+LS++ N AC  KV           E ++  F +CY D  PY + P
Sbjct:   38 RVKFLVDIMEKMGCKMETGFFSSVDC-EGKINGGFHLDDK----RKPGVVLCQNHIPDQEWMDRTVAHELIHAYDHCRNKIDWNNCEHHACSEIRAAALSGDCNWKYEFFRKNFNVNQQHQICTRRRAKLSIEQNGACKGKVD----------ECIEKVFDTCYRDVSPYREIP 196          
BLAST of mRNA_S-ischiensis_contig11.2219.1 vs. uniprot
Match: A0A7S3DJI5_9EUKA (Mitochondrial inner membrane protease ATP23 n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3DJI5_9EUKA)

HSP 1 Score: 151 bits (381), Expect = 1.430e-38
Identity = 77/178 (43.26%), Postives = 104/178 (58.43%), Query Frame = 1
Query:  178 VKFMIEHIEKLGCVLPPDMFTCRPCGEAQASGGWVFDNK-----VEGEFKPQVVLCEDKPLTQTMVNHTLAHELIHAFDQCRNKVNWNNCLHHACSEIRAANTSGECGYWQEFLRGHPEWGGQQQVCVKRRAELSLKGNPACAHKVRGGLPAFVQAREYVQAAFKSCYYDTEPYDKNP 696
            V F+++  EK GC        C  CG   A+GG++ DN+      + +   Q+V+CE+ PL+Q   N+TL+HELIHA D CR K+NW++   HACSEIRA+N SGEC +WQE  RG+     Q Q CVKRRA LS+  NP+C  K          A   V+  F  C+ DT P+D+ P
Sbjct:   39 VDFLLQAFEKAGCGALS--IECSNCGSMAATGGFIADNERHLDPSKADKPRQIVMCENVPLSQGRFNNTLSHELIHAIDDCRAKMNWSDLRQHACSEIRASNLSGECKFWQEVFRGNFGIKKQHQACVKRRAALSVAMNPSCKDKE--------MAEMVVEEVFPQCFEDTVPFDRVP 206          
BLAST of mRNA_S-ischiensis_contig11.2219.1 vs. uniprot
Match: A0A225W3F1_9STRA (Mitochondrial inner membrane protease ATP23 n=12 Tax=Phytophthora TaxID=4783 RepID=A0A225W3F1_9STRA)

HSP 1 Score: 150 bits (380), Expect = 1.510e-38
Identity = 75/174 (43.10%), Postives = 107/174 (61.49%), Query Frame = 1
Query:  175 KVKFMIEHIEKLGCVLPPDMFTCRPCGEAQASGGWVFDNKVEGEFKPQVVLCEDKPLTQTMVNHTLAHELIHAFDQCRNKVNWNNCLHHACSEIRAANTSGECGYWQEFLRGHPEWGGQQQVCVKRRAELSLKGNPACAHKVRGGLPAFVQAREYVQAAFKSCYYDTEPYDKNP 696
            +VKF+++ +EK+GC L P  F+   C E + +GG+  D+    E KP VVLC++    Q  ++ T+AHELIHAFD CRNK++WN C HHACSEIRAA  SG+C +  EF R +     Q Q+C +RRA+LS++ N AC  +         +A E +   F +CY D  P+ + P
Sbjct:   38 RVKFLVDAMEKMGCSLQPGFFSSVNC-EGKINGGFHLDD----EGKPGVVLCQNHIPDQEWMDRTMAHELIHAFDHCRNKIDWNKCEHHACSEIRAAALSGDCNWKYEFFRKNFNVNKQHQLCTRRRAKLSIEQNEACKGR---------RADECIDKVFDNCYRDWSPFREIP 197          
BLAST of mRNA_S-ischiensis_contig11.2219.1 vs. uniprot
Match: A0A8H7PCQ1_MORIS (Mitochondrial inner membrane protease ATP23 (Fragment) n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7PCQ1_MORIS)

HSP 1 Score: 150 bits (379), Expect = 7.370e-38
Identity = 74/174 (42.53%), Postives = 107/174 (61.49%), Query Frame = 1
Query:  175 KVKFMIEHIEKLGCVLPPDMFTCRPCGEAQASGGWVFDNKVEGEFKPQ--VVLCEDKPLTQTMVNHTLAHELIHAFDQCRNKVNWNNCLHHACSEIRAANTSGECGYWQEFLRGHPEWGGQQQVCVKRRAELSLKGNPACAHKVRGGLPAFVQAREYVQAAFKSCYYDTEPYDK 690
             V+FM+E+++K+GC +  + F C PC E ++ G           F PQ  ++LC+++  ++     T+ HE+IH FD CR KV+W+NC HHACSEIRAA+ SG+C + +E  RG   +  Q Q CVKRRA LS++ NPACA +   G      A   V + F+SC+ DT PYD+
Sbjct:   85 NVRFMLENLQKVGCAMKKEDFKCMPCDETRSGG-----------FSPQDGILLCQNRFFSKKHQEDTMVHEMIHMFDNCRFKVDWSNCKHHACSEIRAASLSGDCRWTREVRRGFYTFTKQHQACVKRRAILSVRQNPACADE---GC-----AERAVHSVFESCFADTRPYDE 239          
BLAST of mRNA_S-ischiensis_contig11.2219.1 vs. uniprot
Match: M4B1W1_HYAAE (Mitochondrial inner membrane protease ATP23 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B1W1_HYAAE)

HSP 1 Score: 148 bits (374), Expect = 1.020e-37
Identity = 74/174 (42.53%), Postives = 105/174 (60.34%), Query Frame = 1
Query:  175 KVKFMIEHIEKLGCVLPPDMFTCRPCGEAQASGGWVFDNKVEGEFKPQVVLCEDKPLTQTMVNHTLAHELIHAFDQCRNKVNWNNCLHHACSEIRAANTSGECGYWQEFLRGHPEWGGQQQVCVKRRAELSLKGNPACAHKVRGGLPAFVQAREYVQAAFKSCYYDTEPYDKNP 696
            +VKF+++ IEK GC + P  F+   C E+  +GG+  D+    E KP VVLC++    Q  ++ T+AHELIHAFD CRNK++WN C HH CSE+RAA  SG+C +  EF R +     Q Q+C +RRA+LS++ N AC  +          A E ++  F SCY D  P+ + P
Sbjct:   38 RVKFLVDAIEKGGCKIEPGFFSSIHC-ESDINGGFHLDD----EGKPGVVLCQNHIPDQEWMDRTMAHELIHAFDHCRNKIDWNKCEHHTCSEVRAAALSGDCNWKYEFFRKNFNVSKQHQICTRRRAKLSVEQNEACKGR----------ADECIEQVFDSCYRDWSPFREIP 196          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KCH1_9PHAE1.660e-6258.52Mitochondrial inner membrane protease ATP23 n=2 Ta... [more]
L1ITR7_GUITC1.380e-4146.82Mitochondrial inner membrane protease ATP23 n=1 Ta... [more]
W7TN46_9STRA1.490e-4145.20Mitochondrial inner membrane protease ATP23 n=2 Ta... [more]
A0A835Z5N3_9STRA2.920e-3943.65Mitochondrial inner membrane protease ATP23 n=1 Ta... [more]
M2X4K8_GALSU7.410e-3945.88Mitochondrial inner membrane protease ATP23 n=1 Ta... [more]
A0A3R7KD77_9STRA7.700e-3943.10Mitochondrial inner membrane protease ATP23 n=4 Ta... [more]
A0A7S3DJI5_9EUKA1.430e-3843.26Mitochondrial inner membrane protease ATP23 n=1 Ta... [more]
A0A225W3F1_9STRA1.510e-3843.10Mitochondrial inner membrane protease ATP23 n=12 T... [more]
A0A8H7PCQ1_MORIS7.370e-3842.53Mitochondrial inner membrane protease ATP23 (Fragm... [more]
M4B1W1_HYAAE1.020e-3742.53Mitochondrial inner membrane protease ATP23 n=1 Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:2067105..2072259 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score206.5
Seed ortholog evalue1e-50
Seed eggNOG ortholog2880.D8LT69
KEGG koko:K12492,ko:K18156
KEGG Pathwayko04144,map04144
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0016020,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464
EggNOG free text desc.metalloendopeptidase activity
EggNOG OGsKOG3314@1,KOG3314@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03029,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPeptidase M76, ATP23
Ec32 orthologEc-12_005480.1
Exons5
Model size1924
Cds size516
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815607.4220886-UTR-S-ischiensis_contig11:2067104..20683261622815607.4220886-UTR-S-ischiensis_contig11:2067104..2068326Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 2067105..2068326 -
1695739800.0404415-UTR-S-ischiensis_contig11:2067104..20683261695739800.0404415-UTR-S-ischiensis_contig11:2067104..2068326Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 2067105..2068326 -
1622815607.4883487-UTR-S-ischiensis_contig11:2072073..20722591622815607.4883487-UTR-S-ischiensis_contig11:2072073..2072259Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 2072074..2072259 -
1695739800.1034746-UTR-S-ischiensis_contig11:2072073..20722591695739800.1034746-UTR-S-ischiensis_contig11:2072073..2072259Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 2072074..2072259 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815607.4323766-CDS-S-ischiensis_contig11:2068326..20684011622815607.4323766-CDS-S-ischiensis_contig11:2068326..2068401Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2068327..2068401 -
1695739800.0566869-CDS-S-ischiensis_contig11:2068326..20684011695739800.0566869-CDS-S-ischiensis_contig11:2068326..2068401Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2068327..2068401 -
1622815607.4430697-CDS-S-ischiensis_contig11:2068728..20688181622815607.4430697-CDS-S-ischiensis_contig11:2068728..2068818Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2068729..2068818 -
1695739800.0670989-CDS-S-ischiensis_contig11:2068728..20688181695739800.0670989-CDS-S-ischiensis_contig11:2068728..2068818Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2068729..2068818 -
1622815607.4526637-CDS-S-ischiensis_contig11:2071215..20712991622815607.4526637-CDS-S-ischiensis_contig11:2071215..2071299Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2071216..2071299 -
1695739800.0758493-CDS-S-ischiensis_contig11:2071215..20712991695739800.0758493-CDS-S-ischiensis_contig11:2071215..2071299Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2071216..2071299 -
1622815607.4650433-CDS-S-ischiensis_contig11:2071699..20718341622815607.4650433-CDS-S-ischiensis_contig11:2071699..2071834Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2071700..2071834 -
1695739800.0853455-CDS-S-ischiensis_contig11:2071699..20718341695739800.0853455-CDS-S-ischiensis_contig11:2071699..2071834Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2071700..2071834 -
1622815607.4785674-CDS-S-ischiensis_contig11:2071941..20720731622815607.4785674-CDS-S-ischiensis_contig11:2071941..2072073Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2071942..2072073 -
1695739800.0941608-CDS-S-ischiensis_contig11:2071941..20720731695739800.0941608-CDS-S-ischiensis_contig11:2071941..2072073Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2071942..2072073 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2219.1prot_S-ischiensis_contig11.2219.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 2068327..2072073 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2219.1

>prot_S-ischiensis_contig11.2219.1 ID=prot_S-ischiensis_contig11.2219.1|Name=mRNA_S-ischiensis_contig11.2219.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=172bp
MIEHIEKLGCVLPPDMFTCRPCGEAQASGGWVFDNKVEGEFKPQVVLCED
KPLTQTMVNHTLAHELIHAFDQCRNKVNWNNCLHHACSEIRAANTSGECG
YWQEFLRGHPEWGGQQQVCVKRRAELSLKGNPACAHKVRGGLPAFVQARE
YVQAAFKSCYYDTEPYDKNPW*
back to top

mRNA from alignment at S-ischiensis_contig11:2067105..2072259-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2219.1 ID=mRNA_S-ischiensis_contig11.2219.1|Name=mRNA_S-ischiensis_contig11.2219.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=5155bp|location=Sequence derived from alignment at S-ischiensis_contig11:2067105..2072259- (Schizocladia ischiensis KU_0333)
GAGGGAACGGCTGACCGCAAGCGGTGTGAGGGCATGCTGGAAACGGGACT GAACCGATGTACGTCCAGAGGCAGGGTCCCGTGCCCTCCCGGCATCCGTG GGTATCCATGCGGCGTCTGTTGACCCCCGGGCGCGTGCTGGGCTCTTGGA TCGTGTTTTCCACCCGCAGGTGGGAAGGTGAAGTTCATGATCGAGCACAT CGAGAAGCTGGGGTGCGTGCTACCCCCGGACATGTTTACATGTCGTCCGT GCGGGGAGGCTCAGGCCAGTGGCGGCTGGGTGTTCGACAACAAGGTGGAA GGGGAGTTCAAGCCACAGGTCAGCGGAGCCCGCCGCCGCAAGCTACAAAA CTGCGGCCGTCGGCTCGCAATGGCGTACACTTTTAGTGGCACTTGATGGC GGACCCCGACCCCCGGCCGAAACAGGTAGTCCTTTGCGAAGACAAGCCGC TCACCCAGACCATGGTGAACCACACACTGGCCCACGAGCTCATACACGCC TTTGACCAGTGCAGAAACAAGGTCAACTGGAACAACTGCCTGCACCATGC CTGCAGTGAGGTGCGTCGCCGTTTGTGTGCCATGGCGACCCTCGTGCCTG CCGGTGGCGTGGTGCTTCACGTCCGTCGCGTCCAGCTGCGGTGCAAACTC GTTGGCTGTGCCAGCATTGCGCAGATATTGGCCGGCGGTTGGCGGGCCGC TGGATAAATCGGACGGTGCCCCATTTCCATCAAGCAAATCGCCAGTGCCA CGCACGTACTCAAGGTGCTGTGACCCACATAGTGTAGTCAGCCCTTGAAG CTCGAAGTATTTAGCTTTCTCTGTATTACTCGGAGTATGTGGCTCTGACA TGGGAGGAGGGCACGTGGTCGATTCTGATGCCCCGGCCGGCGTCTCCACT TCCCACATTTCGTTTCCCGGCGAACGCCTCCCTTCCCTCCCCCCCCCGGG GGAAGATCAGATCCGGGCAGCAAACACCAGCGGGGAGTGCGGGTACTGGC AGGAGTTCCTGAGGGGGCACCCGGAGTGGGGAGGCCAGCAACAGGTGCAG TACCCTCCCCCGCGATCATGTCTGTCCCTATCCCTTTTACAGCTGGCCAG CGATCCACGAGAAGGAGCAAAGACGAGGATCGTTCAGGCCCAGGGCATGC ACAGAGACGGGAGTACACACAGTACCCTCCCCCGCGATCATATCTTTCCC TATCCCTTGTATTGCTAAGGGCCCGGGAAGAGATGGCACGGTCAATGGTC TCTGGTGACGGGAAGTTCTGATAGATGTGAGCACTTCGAAGTACTTCGCA GTACTTATGTACTGGACATCCTTGACCCGTAGACTAGAGGACAATGATGC GCTCATCCCAAGCTAAGCTTCTGCCAAGCGCACCTACAGTGGTTACTTAT TGTAGGTGTACTGCCGTCCCCTAGCTCAAGTGAATGCTTTTGTTGAAGTA CTACAAGTACAGTATTACTCATTGCATCTGCTCGCACAATACTAGCCGTG GGGAGACGCCACTGCGATGGATGGGGCTTTGCGGCGTAGAGAGCGGGACG GTGTACTGGCAACCAGGGCAGAGTCTCTCTATGGTCAGATGATCCAATCA CCCTCGGAACCAGGATTGAAGAGGTGTTTGCAAGGGAAACTCGGGCACAG GACGCGTGTTCCTGTTTCTGTCCGAAACCGTGCTGTTGCGGGCAAGTAGG ATGCTGCGGGGATCATGCGGGGACAGGAGCCGGACCACCAAGTGTGGTGT GTGCGCAGAGGAGGATGAGACAGTACAACGCGTTATGCTTGAGTTACCCC ACTACAATTCCGCCAGGATGAGACTACACACTACTTACGGTCTCCGAATG TACCTGCGCTGATACCCATTCAAGTAGCTACGAAATTTTTAACAGTGCAC CCAGAGGAAAGCAGATTACGTCGCTTCTGCATTCCTCAGGTGAGACTGAC TGCGCTGTGGCCCGAGGAAACCCAGAGCAAGGTAGAGTCTACGGTTCGAG ATTTTCTTGTGTCTGTGTGGTGATCGCGGTTGGACCGTGTGGGTAGGGTA GATGGTGACCTTGTATATCCCCCCCCCATGCCCCGGCATGGCGGGGGACC CCCTTCCTCTGCTGAAGCTCGGTCCGGCAGGGGACGCCCCCACCCCGCCC TGACTCTCACGAGTCAGGAGCGGGGGTGGTATGGACCCAACCACTCCCGC TCCATGCACGGGGGGGTGGTCCCTCCCTCCCACCCTGGCTTGCCAGGGGC AAGAGGGAGATTGCTCCGTCGTCAACGGGTGTGGTCAATGGTCTAGGGAC TACGGCAAGCACAACGTGGGTACATATACAGTATTGTACTTGTACAGTAT TGTACTTTGAGGTAGTGGTATACGAGTATACATGAACATTGAAGTGCTGT ATATATCCTTCCGGAAGTACTCAGGTCGTGCTGGCCGTAGTCCCGAGAAA GACCATTGACCGCACGCCTGGACCGACTACAGTATACACGGAGCAGTGAT ATGTACTGTATGTGCTCACGTCGGCCAATAGACTGGGGCTACGGCAAGCA CAGCTTGAGCACACACATACACCTATAATTCGAAATACATATTGCTCACT CTGGCTCGCTGTAGTAGCATGCATACCTATGTACCATGGACTCCATTGGC TTGTCTTGCGACATAACCTTGCGTGCATTGCCGACAGCCCCAAGTCAAAA CTTCGGGTTGGCCCTCCGACAGGAGTAGCTATTTAGCCGTGGACTCTGCT TGCTGTACTACAGTAGTAGTCGTACTCTACTCTAAGGGTTCAAAAGGAGA ATGTTGGCGAGACCTGGCCCGCCCCCCCGAAGCTTTTTTCCGGTCTTATT AACTCCTTGCCAACCCTAAGTCTCCTGTCGGAGTACGTAGCATGTCTGTA TGTACTCGTACAATGATTTGATGTGAGAATGGCCATATGTATTGCAGCCC AGCGTCCTTAGCAAACGCGGAGACGGTGCTCCGTCCTGTAGGGCCTACCC CGTGGGAATGGCCCATTGCTGCTGCTCTAATTGCGGTCAAGCTGTGATGT GATGTCAAACTACAGTGCTTTTGTGTGCACATCACATCACAAGTCACACC ACATCACACACACTGTGTGCACATCACATCACAAATCACACCACATCACA CACACAACAGCTACAGCAGGGACTCGTGAGTACCCCCCCCCCCCGTACCT ACTTGCTGTAGATGTGTTCCCTGTGGCACACGTGTTAGTGATGCGGCCCC ATCAAGTCACTCATGTGCGCCGTGGACACCCCCTAGCACAACAACTACTA GTACGAGAACAGTCAATCTCACACACGTGCGATTGCACCCCGTTGCGAAG TACAATTTATATGAATCACCCCCTACACCACCTTTCCCGCCCTGCCCCGC CCTCTCTGGCCGCCCCTTCCTGCCCCGCTCGTTGTCCCCAGGTGTGCGTG AAACGGCGGGCTGAGCTGTCCCTCAAGGGCAACCCGGCCTGTGCACACAA GGTGCGTGGTGGCCTACCAGCATTCGTACAGGTACTACTACTAGTACTGC ACCTTTCCGGGATCGTGGGAAGAATGCTATTGTACAGGTTCTTCAAAGTA TGTACTCGTTGGGTTGTCTCGCGACATAGCCTTGCGTGCTTAGCCGCCGG CCCTCTACTGAGCCGACGGTTTGGCATGCACAGGACACGGGGTAATTCTA TCCGACATGAGTAGAGTCTACACACACACACACACGCACTGTTCGAATTC TTCCAAGTATATGCTGTATCCATGAGTATATGCTGTATCCATGGGTCAAA CGGCTATGGCAAGCAACTCATCACTGCCCCCCCCGCCATGCCTCCCGTCA ACTTGCAGGCTCGCGAGTACGTGCAAGCCGCTTTCAAGTCATGCTACTAC GACACAGAACCCTACGACAAGAACCCGTGGTAGCTATATATAGCAGGTGC TCGAATACTGTATGTAGTGTGCGTACAGTAGACACAGCACAGTACTCGTA CGTTGCGTTACCTTCATTCACATCACATTTGCCGATCTGCCTGGTTTGAC TCGGCCCCGGGGCGGCTGAGAGAGTGCGCGCTGCTACTGATGCACTTGGA AGCACGGCACAATGCGCAGGCACATCAGTACTTTAGGGCGCCTGCTTGCT TTGGGCAAGTTAGGAGACAAAAGAGACTACAGTACTGTACTGCACGTGCT CAGTACATAGATAGATGCCGCCTTTATTCCCTAGTCTCAGGTGTGCAAGT CCATCGGTTGGGGGCACCGCCGCATTACCTTAGATTGGTGCGGAGACCCG CTCCGCTGACCGCCGACGTCACCTGGCCCGCGCTCCCCGCTGCCAGCTCC CATAGCCTGTAAAACGTACTTCGAAGTAGGTGGCTGCGACCCTTGGCGGG GGAAACCTGGATAGGCCTTGCCGGGGAAACATGCGCAAATGGGTTCGCTG CTGCTCCTGTTAAACACGGGGCGTTGGGGTGGACCGGTTTGCTGTCAAAA TGCCTCTGCGTCCCAGCCTGAGGGAGGCAAGCAGCACCTTTGCCATCGAC CTTCCAGAGAGCAATCTCCGCCTTTGACCTTGTTGATCGCTCTCTGGACG GGTGATGGGTGAGTGCATGGTGCTGCTTGCCTCCCTGGGACGCAGAGGCA TTCGGGCGGCAAACCATCGACGTGAAAGCCCTGTTTTATAACAGGAGCAC GCCAACCCACTGCGCCCATGCTTCCCGGGCGAGCCTATCCAGGTCACTTC AGTTCCCCTGCGAATTGGTGAAGCCACCTGGCAGTGTGTTTGACGTCGGC GCACAGGCCAGCAGGACGGCGGCCGTGTGAGTGTGAGGAGAGTCCTTTGT ACGGAATACATGGCCTCAATGCATGGATTCCTTGGCACTTGAAGTAGTGC TGTGCGCGTGCTCTATGTGCAAGCACTTGCTTGTACAGTGTGTTTTGGTC TGTGTGCAAGTACAGTATGAGTATGCACTACAGTACGTCTTGCAGTATAC ATATACGAGTATGAATCACTACAGTACGCACCGCTTGATCGGACAGCCCC CCCAAGTCTCATCCGGCTCTACATGGTAGTAACCCTTCTCCTGGGTAAAG TCAGACGCCTCCATGCACGCCGGTGATGGACATCCGCCCGCGGAGTGACC CACAC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig11:2067105..2072259-

>mRNA_S-ischiensis_contig11.2219.1 ID=mRNA_S-ischiensis_contig11.2219.1|Name=mRNA_S-ischiensis_contig11.2219.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1032bp|location=Sequence derived from alignment at S-ischiensis_contig11:2067105..2072259- (Schizocladia ischiensis KU_0333)
ATGATCGAGCACATCGAGAAGCTGGGGTGCGTGCTACCCCCGGACATGTT
TACATGTCGTCCGTGCGGGGAGGCTCAGGCCAGTGGCGGCTGGGTGTTCG
ACAACAAGGTGGAAGGGGAGTTCAAGCCACAGATGATCGAGCACATCGAG
AAGCTGGGGTGCGTGCTACCCCCGGACATGTTTACATGTCGTCCGTGCGG
GGAGGCTCAGGCCAGTGGCGGCTGGGTGTTCGACAACAAGGTGGAAGGGG
AGTTCAAGCCACAGGTAGTCCTTTGCGAAGACAAGCCGCTCACCCAGACC
ATGGTGAACCACACACTGGCCCACGAGCTCATACACGCCTTTGACCAGTG
CAGAAACAAGGTCAACTGGAACAACTGCCTGCACCATGCCTGCAGTGAGG
TAGTCCTTTGCGAAGACAAGCCGCTCACCCAGACCATGGTGAACCACACA
CTGGCCCACGAGCTCATACACGCCTTTGACCAGTGCAGAAACAAGGTCAA
CTGGAACAACTGCCTGCACCATGCCTGCAGTGAGATCCGGGCAGCAAACA
CCAGCGGGGAGTGCGGGTACTGGCAGGAGTTCCTGAGGGGGCACCCGGAG
TGGGGAGGCCAGCAACAGATCCGGGCAGCAAACACCAGCGGGGAGTGCGG
GTACTGGCAGGAGTTCCTGAGGGGGCACCCGGAGTGGGGAGGCCAGCAAC
AGGTGTGCGTGAAACGGCGGGCTGAGCTGTCCCTCAAGGGCAACCCGGCC
TGTGCACACAAGGTGCGTGGTGGCCTACCAGCATTCGTACAGGTGTGCGT
GAAACGGCGGGCTGAGCTGTCCCTCAAGGGCAACCCGGCCTGTGCACACA
AGGTGCGTGGTGGCCTACCAGCATTCGTACAGGCTCGCGAGTACGTGCAA
GCCGCTTTCAAGTCATGCTACTACGACACAGAACCCTACGACAAGAACCC
GTGGTAGGCTCGCGAGTACGTGCAAGCCGCTTTCAAGTCATGCTACTACG
ACACAGAACCCTACGACAAGAACCCGTGGTAG
back to top