mRNA_S-ischiensis_contig11.2215.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2215.1
Unique NamemRNA_S-ischiensis_contig11.2215.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig11.2215.1 vs. uniprot
Match: E0VFA3_PEDHC (RBR-type E3 ubiquitin transferase n=1 Tax=Pediculus humanus subsp. corporis TaxID=121224 RepID=E0VFA3_PEDHC)

HSP 1 Score: 88.6 bits (218), Expect = 1.710e-16
Identity = 46/135 (34.07%), Postives = 75/135 (55.56%), Query Frame = -3
Query:    7 REQQDSEVEALAAVFFEEEEFIAESFLDPSDDRQPRHRFRISCKPVQE---DLTLNPGG-----FRVRHLPPIYLRCSFPALYPEKEPPAFTLSCGWLDRRQLSVLCRALDRIWEAFRGGGVVYMWCELLREGCL 387
            R  Q  E+++L ++++ EE  + ++    + + Q +  F   CK  +E      L PG       +V+HLPPI LR +FP  YP K PP F +SC WL + ++S+LC+ LD +W  +    +VY+WC+ L+   L
Sbjct:    3 RSSQLDEIDSLQSIYYAEEFQVTDT---SNQNEQIQAIFWAFCKLPEEYAIKFLLVPGSHEPSYLKVKHLPPIELRLTFPKDYPSKNPPIFVISCKWLPKSKISLLCKKLDELWSEYGPVEIVYIWCDFLKNDAL 134          
BLAST of mRNA_S-ischiensis_contig11.2215.1 vs. uniprot
Match: UPI001E671457 (E3 ubiquitin-protein ligase RNF14-like isoform X1 n=3 Tax=Procambarus clarkii TaxID=6728 RepID=UPI001E671457)

HSP 1 Score: 87.4 bits (215), Expect = 4.280e-16
Identity = 50/138 (36.23%), Postives = 73/138 (52.90%), Query Frame = -3
Query:    7 EQQDSEVEALAAVFFEEEEFIAESFLDPSDD----RQPRHRFRISCKPVQEDLTLNPG--------GFRVRHLPPIYLRCSFPALYPEKEPPAFTLSCGWLDRRQLSVLCRALDRIWEAFRGGGVVYMWCELLREGCL 384
            E+QD E+ ALA+++ E    + +    P +     R       +   P    LT + G         + V HLP IYL  +FPA YP K PP+FTLSC WL+R QL+ LC+ LDR+W   +G  V++ W + L++  L
Sbjct:   29 EEQDDELLALASIYEESFTSVQDQETGPMETQDFIRGGELAIHLELPPDFTLLTRHTGENGEVQEQSYVVEHLPAIYLHFTFPATYPSKHPPSFTLSCKWLNRAQLTQLCQQLDRLWAENKGCVVMFTWAQFLKDESL 166          
BLAST of mRNA_S-ischiensis_contig11.2215.1 vs. uniprot
Match: A0A8J4Y237_CHIOP (RBR-type E3 ubiquitin transferase n=1 Tax=Chionoecetes opilio TaxID=41210 RepID=A0A8J4Y237_CHIOP)

HSP 1 Score: 85.1 bits (209), Expect = 2.610e-15
Identity = 37/67 (55.22%), Postives = 45/67 (67.16%), Query Frame = -3
Query:   16 RVRHLPPIYLRCSFPALYPEKEPPAFTLSCGWLDRRQLSVLCRALDRIWEAFRGGGVVYMWCELLRE 216
            +V HLPPI L  +FPA YP + PP FTLSC WL R QLSVLC+ LD +WE   G  + Y W + L+E
Sbjct:   74 QVEHLPPINLHFTFPAAYPSQHPPGFTLSCKWLSRAQLSVLCQKLDSLWEENEGCVITYTWAQFLKE 140          
BLAST of mRNA_S-ischiensis_contig11.2215.1 vs. uniprot
Match: A0A2P2I4I4_9CRUS (RBR-type E3 ubiquitin transferase n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A2P2I4I4_9CRUS)

HSP 1 Score: 82.4 bits (202), Expect = 2.270e-14
Identity = 45/131 (34.35%), Postives = 74/131 (56.49%), Query Frame = -3
Query:    7 EQQDSEVEALAAVFFEEEEFIAESFLDPSDDRQPRHRFRISCKPVQEDLTLNPGGFR-----VRHLPPIYLRCSFPALYPEKEPPAFTLSCGWLDRRQLSVLCRALDRIWEAFRGGGVVYMWCELLREGCL 384
            E QD E+  L++++   EEF   S  +  D++       +    + + +TL     R     V++LPPIYL   +P+ YP   PP +TL+C W+ R QLS++C+ LDR+WE  +G  ++Y W + ++E CL
Sbjct:    4 EAQDDELLVLSSIY---EEFFHRSTAE-GDNKGGELMIHLD---LTDSITLTAVNGRGRQEQVQYLPPIYLHFWYPSDYPSAAPPVYTLTCKWITRPQLSLVCQELDRLWEENKGDVILYTWSQYIKEECL 127          
BLAST of mRNA_S-ischiensis_contig11.2215.1 vs. uniprot
Match: A0A6J8BE21_MYTCO (RBR-type E3 ubiquitin transferase n=2 Tax=Mytilus TaxID=6548 RepID=A0A6J8BE21_MYTCO)

HSP 1 Score: 80.5 bits (197), Expect = 8.670e-14
Identity = 49/131 (37.40%), Postives = 71/131 (54.20%), Query Frame = -3
Query:   16 EQQDSEVEALAAVFFEEEEFIAESFLDPSDD-RQPRHRFRISCKPVQEDLTLNPGG-------FRVRHLPPIYLRCSFPALYPEKEPPAFTLSCGWLDRRQLSVLCRALDRIWEAFRGGGVVYMWCELLRE 384
            EQQ+ E+ AL +++        E+ L  SDD  +P  +F +S   + E+ ++             V+HLPPI L    P  YP   PP FTLSC WL+R+QLS LC+ LD IWE  +   VV++W   L++
Sbjct:    5 EQQEDELLALTSIY-------DETVLSVSDDTEEPGGQFLVSSH-IPENFSIKSLSKDNKTEEHVVKHLPPIALNFQLPKDYPSVNPPQFTLSCKWLNRKQLSKLCQRLDEIWEENKPCVVVFLWTSFLQD 127          
BLAST of mRNA_S-ischiensis_contig11.2215.1 vs. uniprot
Match: A0A8B8D7N6_CRAVI (RBR-type E3 ubiquitin transferase n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8D7N6_CRAVI)

HSP 1 Score: 79.3 bits (194), Expect = 2.160e-13
Identity = 44/127 (34.65%), Postives = 68/127 (53.54%), Query Frame = -3
Query:   22 REQQDSEVEALAAVFFEEEEFIAESFLDP----SDDRQPRHRFRISCKPVQEDLTLNPGGFR-VRHLPPIYLRCSFPALYPEKEPPAFTLSCGWLDRRQLSVLCRALDRIWEAFRGGGVVYMWCELL 387
            +EQQD E+ AL+++F E    I +   D     S +      F ++      +  + P  +  ++HLPP+ L    P  YP + PP FTLSC WL+R+QLS+LC  LD +WE  +G  +++ W   L
Sbjct:    5 KEQQDDELLALSSIFDETVISIVQDSNDCGGQFSANLHLPENFMLAVITDSTNDEIKPEEYHNLKHLPPLVLDFQLPPNYPSESPPKFTLSCKWLNRKQLSLLCEKLDELWEEDKGSVILFTWTNFL 131          
BLAST of mRNA_S-ischiensis_contig11.2215.1 vs. uniprot
Match: UPI00112C1C9F (E3 ubiquitin-protein ligase RNF14 isoform X1 n=1 Tax=Rhinatrema bivittatum TaxID=194408 RepID=UPI00112C1C9F)

HSP 1 Score: 79.3 bits (194), Expect = 2.270e-13
Identity = 50/130 (38.46%), Postives = 69/130 (53.08%), Query Frame = -3
Query:   16 REQQDSEVEALAAVFFEEEEFIAESF----LDPSDDRQPRHRFRISCKPVQEDLTLNPGGFR--VRHLPPIYLRCSFPALYPEKEPPAFTLSCGWLDRRQLSVLCRALDRIWEAFRGGGVVYMWCELLRE 387
            RE Q+ E+ ALA+++ E+E   AE+     +    +  P  R  +S         LN   F   V  LPP+ L    PA YP   PPAFTLSC WL R QL+ LC+ LD +W+  RG  V++ W + L+E
Sbjct:    6 REAQEDELLALASIYPEDEFKRAETAQGGEIRVCLELPPNFRIFVSGNAA---TNLNNDDFEDSVCFLPPVVLNFELPADYPSASPPAFTLSCKWLSRIQLTALCKQLDNLWDENRGCVVLFAWMQFLKE 132          
BLAST of mRNA_S-ischiensis_contig11.2215.1 vs. uniprot
Match: A0A5N5T8F4_9CRUS (RBR-type E3 ubiquitin transferase n=1 Tax=Armadillidium nasatum TaxID=96803 RepID=A0A5N5T8F4_9CRUS)

HSP 1 Score: 79.0 bits (193), Expect = 3.200e-13
Identity = 32/69 (46.38%), Postives = 48/69 (69.57%), Query Frame = -3
Query:    7 VRHLPPIYLRCSFPALYPEKEPPAFTLSCGWLDRRQLSVLCRALDRIWEAFRGGGVVYMWCELLREGCL 213
            +RHLPP++L  +FP  YP ++PP +TLSC W++R QLS LC+ LD +WE   G  V++ W + L++  L
Sbjct:   69 IRHLPPLHLYFTFPHNYPSEDPPEYTLSCKWINRSQLSYLCKRLDALWEENVGNEVMFTWAQCLKDETL 137          
BLAST of mRNA_S-ischiensis_contig11.2215.1 vs. uniprot
Match: K1R3Z9_CRAGI (RBR-type E3 ubiquitin transferase n=2 Tax=Crassostrea gigas TaxID=29159 RepID=K1R3Z9_CRAGI)

HSP 1 Score: 78.6 bits (192), Expect = 4.530e-13
Identity = 42/127 (33.07%), Postives = 68/127 (53.54%), Query Frame = -3
Query:   22 REQQDSEVEALAAVFFEEEEFIAESFLDPSDDRQPR----HRFRISCKPVQEDLTLNPGGFR-VRHLPPIYLRCSFPALYPEKEPPAFTLSCGWLDRRQLSVLCRALDRIWEAFRGGGVVYMWCELL 387
            +EQQ+ E+ AL++++ +    + +   D       R      F+++    + D  + P  F  ++HLPP+ L    P  YP   PP FTLSC WL+R+QLS+LC  LD +WE  +G  +++ W   L
Sbjct:   81 KEQQEDELLALSSIYDDTVISLVQDDNDCGGQFSARLHFPENFQLAVITDKTDDEIKPEEFHTLKHLPPLILDFQLPPDYPSDNPPQFTLSCKWLNRKQLSLLCAKLDELWEEDKGSVILFTWTNFL 207          
BLAST of mRNA_S-ischiensis_contig11.2215.1 vs. uniprot
Match: A0A210QAL9_MIZYE (RBR-type E3 ubiquitin transferase n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210QAL9_MIZYE)

HSP 1 Score: 77.4 bits (189), Expect = 1.010e-12
Identity = 33/70 (47.14%), Postives = 44/70 (62.86%), Query Frame = -3
Query:    4 VRHLPPIYLRCSFPALYPEKEPPAFTLSCGWLDRRQLSVLCRALDRIWEAFRGGGVVYMWCELLREGCLQ 213
            V+ LPP+ L    PA YP   PP FTLSC WL+R+QL+ LC  LD IWE  +G  +++MW   L E  ++
Sbjct:   70 VKFLPPVILNFQLPADYPSCSPPQFTLSCKWLNRKQLTALCHKLDEIWEENKGNEILFMWTSFLAEETME 139          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2215.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
E0VFA3_PEDHC1.710e-1634.07RBR-type E3 ubiquitin transferase n=1 Tax=Pediculu... [more]
UPI001E6714574.280e-1636.23E3 ubiquitin-protein ligase RNF14-like isoform X1 ... [more]
A0A8J4Y237_CHIOP2.610e-1555.22RBR-type E3 ubiquitin transferase n=1 Tax=Chionoec... [more]
A0A2P2I4I4_9CRUS2.270e-1434.35RBR-type E3 ubiquitin transferase n=1 Tax=Hirondel... [more]
A0A6J8BE21_MYTCO8.670e-1437.40RBR-type E3 ubiquitin transferase n=2 Tax=Mytilus ... [more]
A0A8B8D7N6_CRAVI2.160e-1334.65RBR-type E3 ubiquitin transferase n=1 Tax=Crassost... [more]
UPI00112C1C9F2.270e-1338.46E3 ubiquitin-protein ligase RNF14 isoform X1 n=1 T... [more]
A0A5N5T8F4_9CRUS3.200e-1346.38RBR-type E3 ubiquitin transferase n=1 Tax=Armadill... [more]
K1R3Z9_CRAGI4.530e-1333.07RBR-type E3 ubiquitin transferase n=2 Tax=Crassost... [more]
A0A210QAL9_MIZYE1.010e-1247.14RBR-type E3 ubiquitin transferase n=1 Tax=Mizuhope... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:2046422..2047155 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size735
Cds size573
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815583.6949558-CDS-S-ischiensis_contig11:2046421..20469941622815583.6949558-CDS-S-ischiensis_contig11:2046421..2046994Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2046422..2046994 +
1695739784.825802-CDS-S-ischiensis_contig11:2046421..20469941695739784.825802-CDS-S-ischiensis_contig11:2046421..2046994Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2046422..2046994 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815583.7053077-UTR-S-ischiensis_contig11:2046994..20471551622815583.7053077-UTR-S-ischiensis_contig11:2046994..2047155Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 2046995..2047155 +
1695739784.8346345-UTR-S-ischiensis_contig11:2046994..20471551695739784.8346345-UTR-S-ischiensis_contig11:2046994..2047155Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 2046995..2047155 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2215.1prot_S-ischiensis_contig11.2215.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 2046422..2046994 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2215.1

>prot_S-ischiensis_contig11.2215.1 ID=prot_S-ischiensis_contig11.2215.1|Name=mRNA_S-ischiensis_contig11.2215.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=191bp
FLETPLPQQLAPHVHHAPPPKRLPDSVQSSTEDRELPAVQPPTREGERRG
LFFRVQGRKGASQVDGWKVPHSEPSGIEGEILLHRLARNPEAVARLAVIR
RVKERFCYEFLLFEEHRRQSLNFAVLLLTARLHQFGAIFHGGEAARRVGP
LGAWYMRGDKRGGSTSVPKVDFCPSPRRLPGEAARLQLSN*
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mRNA from alignment at S-ischiensis_contig11:2046422..2047155+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2215.1 ID=mRNA_S-ischiensis_contig11.2215.1|Name=mRNA_S-ischiensis_contig11.2215.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=734bp|location=Sequence derived from alignment at S-ischiensis_contig11:2046422..2047155+ (Schizocladia ischiensis KU_0333)
TTCTTGGAGACACCCCTCCCGCAGCAGCTCGCACCACATGTACACCACGC CCCCCCCCCGAAACGCCTCCCAGATTCTGTCCAGAGCTCTACAGAGGACC GAGAGCTGCCTGCGGTCCAGCCACCCACACGAGAGGGTGAACGCCGGGGG CTCTTTTTCCGGGTACAGGGCAGGAAAGGAGCATCGCAGGTAGATGGGTG GAAGGTGCCGCACTCGGAACCCTCCGGGATTGAGGGTGAGATCCTCCTGC ACCGGCTTGCAAGAAATCCGGAAGCGGTGGCGAGGCTGGCGGTCATCCGA CGGGTCAAGGAAAGATTCTGCTATGAATTCCTCCTCTTCGAAGAACACCG CCGCCAGAGCCTCAACTTCGCTGTCTTGCTGCTCACGGCACGACTCCACC AGTTCGGGGCCATCTTCCATGGTGGTGAGGCGGCCCGACGTGTAGGGCCC TTGGGAGCTTGGTACATGCGGGGGGACAAAAGGGGCGGTTCAACCAGCGT GCCCAAGGTAGATTTTTGCCCTTCCCCCCGCAGGTTGCCTGGCGAAGCGG CCCGACTGCAACTCTCTAATTGAAAGCTCTTGAGCTCTTTTTCGGCCCTT TACATATATATCGGGGGACAGGAGGGCCTCATAAGAATGAGGGGACCTCC GTGCGCATCTGGAACGGGGGCCAGCAAGAGCACAGCTGCAGCGTTTGTGC CCCGCGGGTACTCGACTGTTGAGTGCACCCCGTC
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:2046422..2047155+

>mRNA_S-ischiensis_contig11.2215.1 ID=mRNA_S-ischiensis_contig11.2215.1|Name=mRNA_S-ischiensis_contig11.2215.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1146bp|location=Sequence derived from alignment at S-ischiensis_contig11:2046422..2047155+ (Schizocladia ischiensis KU_0333)
TTCTTGGAGACACCCCTCCCGCAGCAGCTCGCACCACATGTACACCACGC
CCCCCCCCCGAAACGCCTCCCAGATTCTGTCCAGAGCTCTACAGAGGACC
GAGAGCTGCCTGCGGTCCAGCCACCCACACGAGAGGGTGAACGCCGGGGG
CTCTTTTTCCGGGTACAGGGCAGGAAAGGAGCATCGCAGGTAGATGGGTG
GAAGGTGCCGCACTCGGAACCCTCCGGGATTGAGGGTGAGATCCTCCTGC
ACCGGCTTGCAAGAAATCCGGAAGCGGTGGCGAGGCTGGCGGTCATCCGA
CGGGTCAAGGAAAGATTCTGCTATGAATTCCTCCTCTTCGAAGAACACCG
CCGCCAGAGCCTCAACTTCGCTGTCTTGCTGCTCACGGCACGACTCCACC
AGTTCGGGGCCATCTTCCATGGTGGTGAGGCGGCCCGACGTGTAGGGCCC
TTGGGAGCTTGGTACATGCGGGGGGACAAAAGGGGCGGTTCAACCAGCGT
GCCCAAGGTAGATTTTTGCCCTTCCCCCCGCAGGTTGCCTGGCGAAGCGG
CCCGACTGCAACTCTCTAATTGATTCTTGGAGACACCCCTCCCGCAGCAG
CTCGCACCACATGTACACCACGCCCCCCCCCCGAAACGCCTCCCAGATTC
TGTCCAGAGCTCTACAGAGGACCGAGAGCTGCCTGCGGTCCAGCCACCCA
CACGAGAGGGTGAACGCCGGGGGCTCTTTTTCCGGGTACAGGGCAGGAAA
GGAGCATCGCAGGTAGATGGGTGGAAGGTGCCGCACTCGGAACCCTCCGG
GATTGAGGGTGAGATCCTCCTGCACCGGCTTGCAAGAAATCCGGAAGCGG
TGGCGAGGCTGGCGGTCATCCGACGGGTCAAGGAAAGATTCTGCTATGAA
TTCCTCCTCTTCGAAGAACACCGCCGCCAGAGCCTCAACTTCGCTGTCTT
GCTGCTCACGGCACGACTCCACCAGTTCGGGGCCATCTTCCATGGTGGTG
AGGCGGCCCGACGTGTAGGGCCCTTGGGAGCTTGGTACATGCGGGGGGAC
AAAAGGGGCGGTTCAACCAGCGTGCCCAAGGTAGATTTTTGCCCTTCCCC
CCGCAGGTTGCCTGGCGAAGCGGCCCGACTGCAACTCTCTAATTGA
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