mRNA_S-ischiensis_contig11.2170.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2170.1
Unique NamemRNA_S-ischiensis_contig11.2170.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:1762898..1763387 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size490
Cds size345
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2170.1prot_S-ischiensis_contig11.2170.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 1762957..1763301 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815583.3553839-UTR-S-ischiensis_contig11:1762897..17629561622815583.3553839-UTR-S-ischiensis_contig11:1762897..1762956Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 1762898..1762956 +
1695739784.6784317-UTR-S-ischiensis_contig11:1762897..17629561695739784.6784317-UTR-S-ischiensis_contig11:1762897..1762956Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 1762898..1762956 +
1622815583.3812442-UTR-S-ischiensis_contig11:1763301..17633871622815583.3812442-UTR-S-ischiensis_contig11:1763301..1763387Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 1763302..1763387 +
1695739784.6970956-UTR-S-ischiensis_contig11:1763301..17633871695739784.6970956-UTR-S-ischiensis_contig11:1763301..1763387Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 1763302..1763387 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815583.3675573-CDS-S-ischiensis_contig11:1762956..17633011622815583.3675573-CDS-S-ischiensis_contig11:1762956..1763301Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1762957..1763301 +
1695739784.6875784-CDS-S-ischiensis_contig11:1762956..17633011695739784.6875784-CDS-S-ischiensis_contig11:1762956..1763301Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1762957..1763301 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2170.1

>prot_S-ischiensis_contig11.2170.1 ID=prot_S-ischiensis_contig11.2170.1|Name=mRNA_S-ischiensis_contig11.2170.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=115bp
MAFRLVLKTYSERGMKKTWMWRRPCQRWCNYCTTTPSDLLQDTVLTGTTQ
GELQATSLKTSIVARPYSSPGEICVRKGRKGVGGGVQETVATICNCTYTL
ACVDTSKYHSGKPK*
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mRNA from alignment at S-ischiensis_contig11:1762898..1763387+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2170.1 ID=mRNA_S-ischiensis_contig11.2170.1|Name=mRNA_S-ischiensis_contig11.2170.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=490bp|location=Sequence derived from alignment at S-ischiensis_contig11:1762898..1763387+ (Schizocladia ischiensis KU_0333)
TTGCATTCTCCAATAATACTGTACTGCCACGTACAGTACAGTGGTCATTT
CAAGAGTGGATGGCCTTCCGACTGGTGCTAAAAACATACTCTGAAAGGGG
GATGAAAAAGACATGGATGTGGAGGCGCCCTTGCCAACGATGGTGCAACT
ACTGTACTACAACCCCGTCTGATTTGCTGCAAGACACAGTATTAACAGGA
ACAACGCAGGGCGAACTGCAGGCCACGTCACTAAAGACCTCAATAGTGGC
CCGTCCTTATAGCTCGCCAGGGGAAATTTGTGTGAGGAAGGGGAGAAAAG
GAGTAGGGGGAGGAGTTCAAGAAACAGTAGCAACCATCTGCAACTGCACG
TATACTCTAGCATGCGTTGATACTTCAAAGTACCACTCCGGCAAGCCGAA
GTGAGGGCTAGTAAGTAGTATACATCGAAGTATTATCTTACTACTAAGGC
ACAAACAAAGCATGTGGGGGCGAGGACCGGGAGAATGGTA
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:1762898..1763387+

>mRNA_S-ischiensis_contig11.2170.1 ID=mRNA_S-ischiensis_contig11.2170.1|Name=mRNA_S-ischiensis_contig11.2170.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=690bp|location=Sequence derived from alignment at S-ischiensis_contig11:1762898..1763387+ (Schizocladia ischiensis KU_0333)
ATGGCCTTCCGACTGGTGCTAAAAACATACTCTGAAAGGGGGATGAAAAA
GACATGGATGTGGAGGCGCCCTTGCCAACGATGGTGCAACTACTGTACTA
CAACCCCGTCTGATTTGCTGCAAGACACAGTATTAACAGGAACAACGCAG
GGCGAACTGCAGGCCACGTCACTAAAGACCTCAATAGTGGCCCGTCCTTA
TAGCTCGCCAGGGGAAATTTGTGTGAGGAAGGGGAGAAAAGGAGTAGGGG
GAGGAGTTCAAGAAACAGTAGCAACCATCTGCAACTGCACGTATACTCTA
GCATGCGTTGATACTTCAAAGTACCACTCCGGCAAGCCGAAGTGAATGGC
CTTCCGACTGGTGCTAAAAACATACTCTGAAAGGGGGATGAAAAAGACAT
GGATGTGGAGGCGCCCTTGCCAACGATGGTGCAACTACTGTACTACAACC
CCGTCTGATTTGCTGCAAGACACAGTATTAACAGGAACAACGCAGGGCGA
ACTGCAGGCCACGTCACTAAAGACCTCAATAGTGGCCCGTCCTTATAGCT
CGCCAGGGGAAATTTGTGTGAGGAAGGGGAGAAAAGGAGTAGGGGGAGGA
GTTCAAGAAACAGTAGCAACCATCTGCAACTGCACGTATACTCTAGCATG
CGTTGATACTTCAAAGTACCACTCCGGCAAGCCGAAGTGA
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