mRNA_S-ischiensis_contig11.2169.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig11.2169.1 vs. uniprot
Match: A0A6H5L269_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L269_9PHAE) HSP 1 Score: 246 bits (628), Expect = 7.620e-72 Identity = 115/245 (46.94%), Postives = 165/245 (67.35%), Query Frame = 1
Query: 1 IVALGVLLDRYTSVFSKDAWDVGHCKTLPFSIKLKPGAQPMQKRPYRYSPLVERKLNVEIDKFLALGVVSWSKSNWGSPVVCIARKNGNVRVTCDYRSLNAQTVIPAVPFPHIDTILNSLGGSKYYTIADLTQGYFGVAIEEESIPLAAFVTSFGLFEWLRCPQGASGAPGAFVTLMQIVLRGLKKVEAFLDDIISHSGIAEGHVAGLKALFDRLREHDLKLSPSKVHIAMLEVKLLGHQVSAEG 735
I +L +L + FS D+GHC LPF I LKPG +P+++RPYR SP++ RK+ +EID+ +++G++ S SNW SP+V + +K+G++R+TC+++ LN T++P P P + ++++LGGSK +++ DL GYF AI+E SIPL A TSFGLFEW R PQG SG+P F +LM V GL+K++ +LDD+I S A HV L+ L R +E DLKLSP K HI EV LGH ++ G
Sbjct: 37 IDSLADVLVEHADRFSAHKTDLGHCTALPFRIDLKPGTRPVKQRPYRRSPVINRKIKIEIDRLVSVGILRKSTSNWASPLVAVLKKDGSLRLTCNFKRLNEATIVPVFPMPLVSDLISALGGSKVFSVLDLMSGYFQAAIDESSIPLTAVCTSFGLFEWTRTPQGCSGSPANFQSLMAKVCDGLRKIQVYLDDVIVPSLTAAEHVVQLRELLVRFKEFDLKLSPKKAHIGSAEVTFLGHLITPFG 281
BLAST of mRNA_S-ischiensis_contig11.2169.1 vs. uniprot
Match: A0A6H5JXS4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXS4_9PHAE) HSP 1 Score: 230 bits (587), Expect = 1.920e-71 Identity = 112/246 (45.53%), Postives = 164/246 (66.67%), Query Frame = 1
Query: 1 IVALGVLLDRYTSVFSKDAWDVGHCKTLPFSIKLKPGAQPMQKRPYRYSPLVERKLNVEIDKFLALGVVSWSKSNWGSPVVCIARKNGNVRVTCDYRSLNAQTVIPAVPFPHIDTILNSLGGSKYYTIADLTQGYFGVAIEEESIPLAAFVTSFGLFEWLRCPQGASGAPGAFVTLMQIVLRGLKKVEAFLDDIISHSGIAEGHVAGLKALFDRLREHDLKLSPSKVHIAMLEVKLLGHQVSAEGV 738
I+ L LL +Y FS+D D+G K PF I LKPGAQP+++RPYRYSP++ K+ +EIDK L GV+ S SNW SP+V +A+ NG VR+T +Y+ +N +VIP +P P ++ IL L +K ++ DL G+F IEE+SIP+ A +T+ GL+E++ PQG S +PG F ++MQ V GL++V F+DD+I +S HV L+ F+R+ + +LKL+P K + + V LGHQV+AEG+
Sbjct: 73 IIKLSDLLCKYEHRFSRDGTDLGQVKVDPFRIILKPGAQPVKQRPYRYSPIINEKVQIEIDKLLLAGVLRRSYSNWASPLVVVAKANGGVRLTVNYKKVNQMSVIPKLPIPVVEDILADLKSAKIFSTLDLISGFFQCCIEEDSIPITAVITATGLYEFMAMPQGLSSSPGWFHSVMQRVCDGLERVRLFIDDVIVYSRNGAEHVQDLEKFFERMTKFNLKLAPKKAQLGVKVVTFLGHQVTAEGI 318
BLAST of mRNA_S-ischiensis_contig11.2169.1 vs. uniprot
Match: A0A6H5KLE7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLE7_9PHAE) HSP 1 Score: 230 bits (587), Expect = 3.560e-71 Identity = 112/246 (45.53%), Postives = 164/246 (66.67%), Query Frame = 1
Query: 1 IVALGVLLDRYTSVFSKDAWDVGHCKTLPFSIKLKPGAQPMQKRPYRYSPLVERKLNVEIDKFLALGVVSWSKSNWGSPVVCIARKNGNVRVTCDYRSLNAQTVIPAVPFPHIDTILNSLGGSKYYTIADLTQGYFGVAIEEESIPLAAFVTSFGLFEWLRCPQGASGAPGAFVTLMQIVLRGLKKVEAFLDDIISHSGIAEGHVAGLKALFDRLREHDLKLSPSKVHIAMLEVKLLGHQVSAEGV 738
I+ L LL +Y FS+D D+G K PF I LKPGAQP+++RPYRYSP++ K+ +EIDK L GV+ S SNW SP+V +A+ NG VR+T +Y+ +N +VIP +P P ++ IL L +K ++ DL G+F IEE+SIP+ A +T+ GL+E++ PQG S +PG F ++MQ V GL++V F+DD+I +S HV L+ F+R+ + +LKL+P K + + V LGHQV+AEG+
Sbjct: 94 IIKLSDLLCKYEHRFSRDGTDLGQVKVDPFRIILKPGAQPVKQRPYRYSPIINEKVQIEIDKLLLAGVLRRSYSNWASPLVVVAKANGGVRLTVNYKKVNQMSVIPKLPIPVVEDILADLKSAKIFSTLDLISGFFQCCIEEDSIPITAVITATGLYEFMAMPQGLSSSPGWFHSVMQRVCDGLERVRLFIDDVIVYSRNGAEHVQDLEKFFERMTKFNLKLAPKKAQLGVKVVTFLGHQVTAEGI 339
BLAST of mRNA_S-ischiensis_contig11.2169.1 vs. uniprot
Match: A0A6H5KIC8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIC8_9PHAE) HSP 1 Score: 206 bits (523), Expect = 4.490e-61 Identity = 103/243 (42.39%), Postives = 156/243 (64.20%), Query Frame = 1
Query: 10 LGVLLDRYTSVFSKDAWDVGHCKTLPFSIKLKPGAQPMQKRPYRYSPLVERKLNVEIDKFLALGVVSWSKSNWGSPVVCIARKNGNVRVTCDYRSLNAQTVIPAVPFPHIDTILNSLGGSKYYTIADLTQGYFGVAIEEESIPLAAFVTSFGLFEWLRCPQGASGAPGAFVTLMQIVLRGLKKVEAFLDDIISHSGIAEGHVAGLKALFDRLREHDLKLSPSKVHIAMLEVKLLGHQVSAEGV 738
LG ++ ++ FSK D+G PF I LK GA P++++PYRYSP++ K+ +E+DK L GV+ S SNW SP+V +A+ NG VR+T +Y +N +VIP +P P ++ IL L SK ++ DL G+F +IE++SIP+ A +T GL+E+L QG S +PG F ++M V GL++V F+DD+I S HV L+ F+R+ + +LKL+P K ++ + V LGHQV+AEG+
Sbjct: 127 LGDIVCKFEHRFSKGGSDLGRVTVDPFRIILKTGAHPVRQKPYRYSPVMNEKVQIEVDKLLLAGVLRRSYSNWASPLVVVAKANGGVRLTVNYNRINKISVIPTLPIPIVEDILAELDESKIFSTLDLVSGFFQCSIEKDSIPITAVITPTGLYEFLSVLQGLSSSPGWFHSVMARVCDGLERVRVFIDDVIVFSRDEAEHVRDLERFFERMVKFNLKLAPKKTNLGVKVVTFLGHQVTAEGI 369
BLAST of mRNA_S-ischiensis_contig11.2169.1 vs. uniprot
Match: A0A6H5L4V5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4V5_9PHAE) HSP 1 Score: 206 bits (523), Expect = 1.470e-58 Identity = 99/239 (41.42%), Postives = 148/239 (61.92%), Query Frame = 1
Query: 22 LDRYTSVFSKDAWDVGHCKTLPFSIKLKPGAQPMQKRPYRYSPLVERKLNVEIDKFLALGVVSWSKSNWGSPVVCIARKNGNVRVTCDYRSLNAQTVIPAVPFPHIDTILNSLGGSKYYTIADLTQGYFGVAIEEESIPLAAFVTSFGLFEWLRCPQGASGAPGAFVTLMQIVLRGLKKVEAFLDDIISHSGIAEGHVAGLKALFDRLREHDLKLSPSKVHIAMLEVKLLGHQVSAEGV 738
L Y+ VFS D G C +PF++ + G +P+ RPYR +PL+++K++ +D++LA GV+ S S W SP+V I +K+G+VR+T +Y+ LNA + P P +D IL+SL K ++I DL + + +E+++PL AF T LFEWLR PQGA+ +P FV ++ V+ GL++V A+LDD+I GHV L F RLR+++LKLSP K + LGH +S GV
Sbjct: 25 LVEYSDVFSTSKTDFGSCNIMPFTLSVPAGTKPVASRPYRINPLMQKKVDAVLDQYLAAGVIQHSTSPWASPLVVILKKDGSVRITVNYKRLNALVDLDGQPLPRVDGILDSLYTGKVFSIFDLNSAFHQIVCDEDTVPLTAFCTPTQLFEWLRMPQGANASPSWFVKVINRVVHGLERVLAYLDDVICFDEEPLGHVLNLIEFFKRLRQYNLKLSPGKARVGATHANFLGHTISPAGV 263
BLAST of mRNA_S-ischiensis_contig11.2169.1 vs. uniprot
Match: A0A6H5KQF4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQF4_9PHAE) HSP 1 Score: 195 bits (495), Expect = 2.840e-58 Identity = 98/220 (44.55%), Postives = 144/220 (65.45%), Query Frame = 1
Query: 10 LGVLLDRYTSVFSKDAWDVGHCKTLPFSIKLKPGAQPMQKRPYRYSPLVERKLNVEIDKFLALGVVSWSKSNWGSPVVCIARKNGNVRVTCDYRSLNAQTVIPAVPFPHIDTILNSLGGSKYYTIADLTQGYFGVAIEEESIPLAAFVTSFGLFEWLRCPQGASGAPGAFVTLMQIVLRGLKKVEAFLDDIISHSGIAEGHVAGLKALFDRLREHDLKLS 669
LG LL ++ FSK D+G PF + LKPGAQP+++RPYRYSP+++ + +EIDK L GV+ S SNW SP+V +A+ NG VR+T +Y+ +N +VIP +P ++ IL L SK ++ DL G+F +IEE+SIP+ A +TS GL+E+L PQG S +PG F ++M V GL++V F+DD+I S HV L+ F+R+ + +LKL+
Sbjct: 53 LGDLLCKFERRFSKGGSDLGRVTVDPFRVILKPGAQPVRQRPYRYSPVMKENVQIEIDKLLLAGVLRRSYSNWASPLVVVAKANGGVRLTVNYKRINKMSVIPTLPIRIVEDILAELDKSKIFSTLDLVSGFFQCSIEEDSIPITAVITSTGLYEFLSVPQGLSSSPGWFHSVMARVCGGLERVRLFIDDVIVFSRDGAEHVRDLERFFERMVKFNLKLA 272
BLAST of mRNA_S-ischiensis_contig11.2169.1 vs. uniprot
Match: A0A6H5K8H1_9PHAE (RT_RNaseH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8H1_9PHAE) HSP 1 Score: 200 bits (508), Expect = 6.520e-58 Identity = 100/242 (41.32%), Postives = 143/242 (59.09%), Query Frame = 1
Query: 1 IVALGVLLDRYTSVFSKDAWDVGHCKTLPFSIKLKPGAQPMQKRPYRYSPLVERKLNVEIDKFLALGVVSWSKSNWGSPVVCIARKNGNVRVTCDYRSLNAQTVIPAVPFPHIDTILNSLGGSKYYTIADLTQGYFGVAIEEESIPLAAFVTSFGLFEWLRCPQGASGAPGAFVTLMQIVLRGLKKVEAFLDDIISHSGIAEGHVAGLKALFDRLREHDLKLSPSKVHIAMLEVKLLGHQVS 726
I +L +L + FS D+GHC TLPF I LKPG +P+++RPYR SP++ RK+ +EID+ ++ G++ SNW SP+V + +++G++R+TC++ N T++P P P + ++++LGGSK +++ DL GYF AI+E SIPL A TSFGL EW R PQG SG+P F +LM A L+ L R E DLKLSP K HI EV LGH ++
Sbjct: 37 IDSLADVLVEHADWFSAHKTDLGHCTTLPFRIDLKPGTRPVKQRPYRRSPVINRKIKIEIDRLVSCGILRKFTSNWASPLVAVLKEDGSLRLTCNFTRSNEATIVPVFPMPLVSDLISALGGSKVFSVLDLMSGYFQAAIDESSIPLTAVCTSFGLSEWTRTPQGYSGSPANFQSLM----------------------------AKLRELLVRFTEFDLKLSPKKAHIGSAEVTFLGHLIT 250
BLAST of mRNA_S-ischiensis_contig11.2169.1 vs. uniprot
Match: A0A6H5L052_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L052_9PHAE) HSP 1 Score: 199 bits (507), Expect = 9.580e-57 Identity = 99/243 (40.74%), Postives = 146/243 (60.08%), Query Frame = 1
Query: 10 LGVLLDRYTSVFSKDAWDVGHCKTLPFSIKLKPGAQPMQKRPYRYSPLVERKLNVEIDKFLALGVVSWSKSNWGSPVVCIARKNGNVRVTCDYRSLNAQTVIPAVPFPHIDTILNSLGGSKYYTIADLTQGYFGVAIEEESIPLAAFVTSFGLFEWLRCPQGASGAPGAFVTLMQIVLRGLKKVEAFLDDIISHSGIAEGHVAGLKALFDRLREHDLKLSPSKVHIAMLEVKLLGHQVSAEGV 738
LG +L Y VFS D G C PF + + PG+ P+ RPYR +P V ++++ +D++LA G++ S S + S +V I +K+G VR+T +YR LN + +P P ID L+ L Y++ D+ + + + E+IPL AFVTS GLFEWL+ PQG+S APG F ++ V++ L V ++LDD+I HV ++ALF+RLR H+LKL+P K I E LGH +S +GV
Sbjct: 274 LGNVLCEYHDVFSSSPTDFGSCSLFPFKLAVPPGSAPVTSRPYRVNPPVAKQVDAILDQYLAAGLIQHSTSPYSSALVVILKKSGGVRITVNYRKLNKLCTLSQLPIPRIDDTLDKLLKGHTYSLFDMKSSFHQITVHRETIPLTAFVTSCGLFEWLKMPQGSSAAPGWFCKVVNEVIKNLHGVASYLDDLIVFDNNPAFHVDTMRALFERLRTHNLKLTPPKATIGTTEANFLGHTISPDGV 516
BLAST of mRNA_S-ischiensis_contig11.2169.1 vs. uniprot
Match: A0A6H5JUZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUZ4_9PHAE) HSP 1 Score: 204 bits (518), Expect = 2.190e-56 Identity = 98/246 (39.84%), Postives = 149/246 (60.57%), Query Frame = 1
Query: 1 IVALGVLLDRYTSVFSKDAWDVGHCKTLPFSIKLKPGAQPMQKRPYRYSPLVERKLNVEIDKFLALGVVSWSKSNWGSPVVCIARKNGNVRVTCDYRSLNAQTVIPAVPFPHIDTILNSLGGSKYYTIADLTQGYFGVAIEEESIPLAAFVTSFGLFEWLRCPQGASGAPGAFVTLMQIVLRGLKKVEAFLDDIISHSGIAEGHVAGLKALFDRLREHDLKLSPSKVHIAMLEVKLLGHQVSAEGV 738
I LG +L Y VFS D G C PF + + PG+ P+ RPYR +P V ++++ +D++LA G++ S S + SP+V I +K+G VR+T +YR LN + +P P +D L+ L + Y++ D+ + + + ++IPL AFVTS GLFEWL+ PQG+S APG F ++ V++ L V ++LDD+I HV ++ALF+RLR H+LKL+P K + E LGH +S +GV
Sbjct: 233 ITQLGDVLCEYHDVFSSSPTDFGSCSLFPFKLTVPPGSAPVTSRPYRVNPPVAKQVDAILDQYLAAGLIQHSTSPYSSPLVVIPKKSGGVRITVNYRKLNKLCALSQLPIPRVDDTLDKLLKGRIYSLFDMKSSFHQITVHRDTIPLTAFVTSSGLFEWLKMPQGSSAAPGWFCKVVNEVIKNLHGVASYLDDLIVFDDNPASHVDTMRALFERLRTHNLKLTPPKATVGATEADFLGHTISPDGV 478
BLAST of mRNA_S-ischiensis_contig11.2169.1 vs. uniprot
Match: A0A6H5JK47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK47_9PHAE) HSP 1 Score: 203 bits (516), Expect = 4.290e-56 Identity = 97/239 (40.59%), Postives = 147/239 (61.51%), Query Frame = 1
Query: 22 LDRYTSVFSKDAWDVGHCKTLPFSIKLKPGAQPMQKRPYRYSPLVERKLNVEIDKFLALGVVSWSKSNWGSPVVCIARKNGNVRVTCDYRSLNAQTVIPAVPFPHIDTILNSLGGSKYYTIADLTQGYFGVAIEEESIPLAAFVTSFGLFEWLRCPQGASGAPGAFVTLMQIVLRGLKKVEAFLDDIISHSGIAEGHVAGLKALFDRLREHDLKLSPSKVHIAMLEVKLLGHQVSAEGV 738
L Y+ VFS D G C +PF++ + G +P+ RPYR +PL+++K++ +D++LA G++ S S W SP+V I +K+G+VR+T +Y+ LNA + P P +D IL+SL K ++I DL + + ++E++PL AF T LFEWLR PQGA+ +P FV ++ V+ GL +V A+LDD+I GHV + F RLR+++LKLSP K + LGH +S GV
Sbjct: 725 LFEYSDVFSTSKTDFGSCNIMPFTLSVPAGTKPVASRPYRINPLMQKKVDAVLDQYLAAGLIQHSTSPWASPLVVIPKKDGSVRITVNYKRLNALVDLDGQPLPRVDGILDSLYTGKVFSIFDLNSAFHQIVCDDETVPLTAFCTPTQLFEWLRMPQGANASPSWFVKVINRVVHGLDRVLAYLDDVICFDEEPLGHVLNMIEFFKRLRQYNLKLSPGKARVGATHANFLGHTISPAGV 963 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig11.2169.1 >prot_S-ischiensis_contig11.2169.1 ID=prot_S-ischiensis_contig11.2169.1|Name=mRNA_S-ischiensis_contig11.2169.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=246bp IVALGVLLDRYTSVFSKDAWDVGHCKTLPFSIKLKPGAQPMQKRPYRYSPback to top mRNA from alignment at S-ischiensis_contig11:1753610..1754347+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig11.2169.1 ID=mRNA_S-ischiensis_contig11.2169.1|Name=mRNA_S-ischiensis_contig11.2169.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=738bp|location=Sequence derived from alignment at S-ischiensis_contig11:1753610..1754347+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig11:1753610..1754347+ >mRNA_S-ischiensis_contig11.2169.1 ID=mRNA_S-ischiensis_contig11.2169.1|Name=mRNA_S-ischiensis_contig11.2169.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1476bp|location=Sequence derived from alignment at S-ischiensis_contig11:1753610..1754347+ (Schizocladia ischiensis KU_0333)back to top |