mRNA_S-ischiensis_contig11.2169.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2169.1
Unique NamemRNA_S-ischiensis_contig11.2169.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig11.2169.1 vs. uniprot
Match: A0A6H5L269_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L269_9PHAE)

HSP 1 Score: 246 bits (628), Expect = 7.620e-72
Identity = 115/245 (46.94%), Postives = 165/245 (67.35%), Query Frame = 1
Query:    1 IVALGVLLDRYTSVFSKDAWDVGHCKTLPFSIKLKPGAQPMQKRPYRYSPLVERKLNVEIDKFLALGVVSWSKSNWGSPVVCIARKNGNVRVTCDYRSLNAQTVIPAVPFPHIDTILNSLGGSKYYTIADLTQGYFGVAIEEESIPLAAFVTSFGLFEWLRCPQGASGAPGAFVTLMQIVLRGLKKVEAFLDDIISHSGIAEGHVAGLKALFDRLREHDLKLSPSKVHIAMLEVKLLGHQVSAEG 735
            I +L  +L  +   FS    D+GHC  LPF I LKPG +P+++RPYR SP++ RK+ +EID+ +++G++  S SNW SP+V + +K+G++R+TC+++ LN  T++P  P P +  ++++LGGSK +++ DL  GYF  AI+E SIPL A  TSFGLFEW R PQG SG+P  F +LM  V  GL+K++ +LDD+I  S  A  HV  L+ L  R +E DLKLSP K HI   EV  LGH ++  G
Sbjct:   37 IDSLADVLVEHADRFSAHKTDLGHCTALPFRIDLKPGTRPVKQRPYRRSPVINRKIKIEIDRLVSVGILRKSTSNWASPLVAVLKKDGSLRLTCNFKRLNEATIVPVFPMPLVSDLISALGGSKVFSVLDLMSGYFQAAIDESSIPLTAVCTSFGLFEWTRTPQGCSGSPANFQSLMAKVCDGLRKIQVYLDDVIVPSLTAAEHVVQLRELLVRFKEFDLKLSPKKAHIGSAEVTFLGHLITPFG 281          
BLAST of mRNA_S-ischiensis_contig11.2169.1 vs. uniprot
Match: A0A6H5JXS4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXS4_9PHAE)

HSP 1 Score: 230 bits (587), Expect = 1.920e-71
Identity = 112/246 (45.53%), Postives = 164/246 (66.67%), Query Frame = 1
Query:    1 IVALGVLLDRYTSVFSKDAWDVGHCKTLPFSIKLKPGAQPMQKRPYRYSPLVERKLNVEIDKFLALGVVSWSKSNWGSPVVCIARKNGNVRVTCDYRSLNAQTVIPAVPFPHIDTILNSLGGSKYYTIADLTQGYFGVAIEEESIPLAAFVTSFGLFEWLRCPQGASGAPGAFVTLMQIVLRGLKKVEAFLDDIISHSGIAEGHVAGLKALFDRLREHDLKLSPSKVHIAMLEVKLLGHQVSAEGV 738
            I+ L  LL +Y   FS+D  D+G  K  PF I LKPGAQP+++RPYRYSP++  K+ +EIDK L  GV+  S SNW SP+V +A+ NG VR+T +Y+ +N  +VIP +P P ++ IL  L  +K ++  DL  G+F   IEE+SIP+ A +T+ GL+E++  PQG S +PG F ++MQ V  GL++V  F+DD+I +S     HV  L+  F+R+ + +LKL+P K  + +  V  LGHQV+AEG+
Sbjct:   73 IIKLSDLLCKYEHRFSRDGTDLGQVKVDPFRIILKPGAQPVKQRPYRYSPIINEKVQIEIDKLLLAGVLRRSYSNWASPLVVVAKANGGVRLTVNYKKVNQMSVIPKLPIPVVEDILADLKSAKIFSTLDLISGFFQCCIEEDSIPITAVITATGLYEFMAMPQGLSSSPGWFHSVMQRVCDGLERVRLFIDDVIVYSRNGAEHVQDLEKFFERMTKFNLKLAPKKAQLGVKVVTFLGHQVTAEGI 318          
BLAST of mRNA_S-ischiensis_contig11.2169.1 vs. uniprot
Match: A0A6H5KLE7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLE7_9PHAE)

HSP 1 Score: 230 bits (587), Expect = 3.560e-71
Identity = 112/246 (45.53%), Postives = 164/246 (66.67%), Query Frame = 1
Query:    1 IVALGVLLDRYTSVFSKDAWDVGHCKTLPFSIKLKPGAQPMQKRPYRYSPLVERKLNVEIDKFLALGVVSWSKSNWGSPVVCIARKNGNVRVTCDYRSLNAQTVIPAVPFPHIDTILNSLGGSKYYTIADLTQGYFGVAIEEESIPLAAFVTSFGLFEWLRCPQGASGAPGAFVTLMQIVLRGLKKVEAFLDDIISHSGIAEGHVAGLKALFDRLREHDLKLSPSKVHIAMLEVKLLGHQVSAEGV 738
            I+ L  LL +Y   FS+D  D+G  K  PF I LKPGAQP+++RPYRYSP++  K+ +EIDK L  GV+  S SNW SP+V +A+ NG VR+T +Y+ +N  +VIP +P P ++ IL  L  +K ++  DL  G+F   IEE+SIP+ A +T+ GL+E++  PQG S +PG F ++MQ V  GL++V  F+DD+I +S     HV  L+  F+R+ + +LKL+P K  + +  V  LGHQV+AEG+
Sbjct:   94 IIKLSDLLCKYEHRFSRDGTDLGQVKVDPFRIILKPGAQPVKQRPYRYSPIINEKVQIEIDKLLLAGVLRRSYSNWASPLVVVAKANGGVRLTVNYKKVNQMSVIPKLPIPVVEDILADLKSAKIFSTLDLISGFFQCCIEEDSIPITAVITATGLYEFMAMPQGLSSSPGWFHSVMQRVCDGLERVRLFIDDVIVYSRNGAEHVQDLEKFFERMTKFNLKLAPKKAQLGVKVVTFLGHQVTAEGI 339          
BLAST of mRNA_S-ischiensis_contig11.2169.1 vs. uniprot
Match: A0A6H5KIC8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIC8_9PHAE)

HSP 1 Score: 206 bits (523), Expect = 4.490e-61
Identity = 103/243 (42.39%), Postives = 156/243 (64.20%), Query Frame = 1
Query:   10 LGVLLDRYTSVFSKDAWDVGHCKTLPFSIKLKPGAQPMQKRPYRYSPLVERKLNVEIDKFLALGVVSWSKSNWGSPVVCIARKNGNVRVTCDYRSLNAQTVIPAVPFPHIDTILNSLGGSKYYTIADLTQGYFGVAIEEESIPLAAFVTSFGLFEWLRCPQGASGAPGAFVTLMQIVLRGLKKVEAFLDDIISHSGIAEGHVAGLKALFDRLREHDLKLSPSKVHIAMLEVKLLGHQVSAEGV 738
            LG ++ ++   FSK   D+G     PF I LK GA P++++PYRYSP++  K+ +E+DK L  GV+  S SNW SP+V +A+ NG VR+T +Y  +N  +VIP +P P ++ IL  L  SK ++  DL  G+F  +IE++SIP+ A +T  GL+E+L   QG S +PG F ++M  V  GL++V  F+DD+I  S     HV  L+  F+R+ + +LKL+P K ++ +  V  LGHQV+AEG+
Sbjct:  127 LGDIVCKFEHRFSKGGSDLGRVTVDPFRIILKTGAHPVRQKPYRYSPVMNEKVQIEVDKLLLAGVLRRSYSNWASPLVVVAKANGGVRLTVNYNRINKISVIPTLPIPIVEDILAELDESKIFSTLDLVSGFFQCSIEKDSIPITAVITPTGLYEFLSVLQGLSSSPGWFHSVMARVCDGLERVRVFIDDVIVFSRDEAEHVRDLERFFERMVKFNLKLAPKKTNLGVKVVTFLGHQVTAEGI 369          
BLAST of mRNA_S-ischiensis_contig11.2169.1 vs. uniprot
Match: A0A6H5L4V5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4V5_9PHAE)

HSP 1 Score: 206 bits (523), Expect = 1.470e-58
Identity = 99/239 (41.42%), Postives = 148/239 (61.92%), Query Frame = 1
Query:   22 LDRYTSVFSKDAWDVGHCKTLPFSIKLKPGAQPMQKRPYRYSPLVERKLNVEIDKFLALGVVSWSKSNWGSPVVCIARKNGNVRVTCDYRSLNAQTVIPAVPFPHIDTILNSLGGSKYYTIADLTQGYFGVAIEEESIPLAAFVTSFGLFEWLRCPQGASGAPGAFVTLMQIVLRGLKKVEAFLDDIISHSGIAEGHVAGLKALFDRLREHDLKLSPSKVHIAMLEVKLLGHQVSAEGV 738
            L  Y+ VFS    D G C  +PF++ +  G +P+  RPYR +PL+++K++  +D++LA GV+  S S W SP+V I +K+G+VR+T +Y+ LNA   +   P P +D IL+SL   K ++I DL   +  +  +E+++PL AF T   LFEWLR PQGA+ +P  FV ++  V+ GL++V A+LDD+I       GHV  L   F RLR+++LKLSP K  +       LGH +S  GV
Sbjct:   25 LVEYSDVFSTSKTDFGSCNIMPFTLSVPAGTKPVASRPYRINPLMQKKVDAVLDQYLAAGVIQHSTSPWASPLVVILKKDGSVRITVNYKRLNALVDLDGQPLPRVDGILDSLYTGKVFSIFDLNSAFHQIVCDEDTVPLTAFCTPTQLFEWLRMPQGANASPSWFVKVINRVVHGLERVLAYLDDVICFDEEPLGHVLNLIEFFKRLRQYNLKLSPGKARVGATHANFLGHTISPAGV 263          
BLAST of mRNA_S-ischiensis_contig11.2169.1 vs. uniprot
Match: A0A6H5KQF4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQF4_9PHAE)

HSP 1 Score: 195 bits (495), Expect = 2.840e-58
Identity = 98/220 (44.55%), Postives = 144/220 (65.45%), Query Frame = 1
Query:   10 LGVLLDRYTSVFSKDAWDVGHCKTLPFSIKLKPGAQPMQKRPYRYSPLVERKLNVEIDKFLALGVVSWSKSNWGSPVVCIARKNGNVRVTCDYRSLNAQTVIPAVPFPHIDTILNSLGGSKYYTIADLTQGYFGVAIEEESIPLAAFVTSFGLFEWLRCPQGASGAPGAFVTLMQIVLRGLKKVEAFLDDIISHSGIAEGHVAGLKALFDRLREHDLKLS 669
            LG LL ++   FSK   D+G     PF + LKPGAQP+++RPYRYSP+++  + +EIDK L  GV+  S SNW SP+V +A+ NG VR+T +Y+ +N  +VIP +P   ++ IL  L  SK ++  DL  G+F  +IEE+SIP+ A +TS GL+E+L  PQG S +PG F ++M  V  GL++V  F+DD+I  S     HV  L+  F+R+ + +LKL+
Sbjct:   53 LGDLLCKFERRFSKGGSDLGRVTVDPFRVILKPGAQPVRQRPYRYSPVMKENVQIEIDKLLLAGVLRRSYSNWASPLVVVAKANGGVRLTVNYKRINKMSVIPTLPIRIVEDILAELDKSKIFSTLDLVSGFFQCSIEEDSIPITAVITSTGLYEFLSVPQGLSSSPGWFHSVMARVCGGLERVRLFIDDVIVFSRDGAEHVRDLERFFERMVKFNLKLA 272          
BLAST of mRNA_S-ischiensis_contig11.2169.1 vs. uniprot
Match: A0A6H5K8H1_9PHAE (RT_RNaseH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8H1_9PHAE)

HSP 1 Score: 200 bits (508), Expect = 6.520e-58
Identity = 100/242 (41.32%), Postives = 143/242 (59.09%), Query Frame = 1
Query:    1 IVALGVLLDRYTSVFSKDAWDVGHCKTLPFSIKLKPGAQPMQKRPYRYSPLVERKLNVEIDKFLALGVVSWSKSNWGSPVVCIARKNGNVRVTCDYRSLNAQTVIPAVPFPHIDTILNSLGGSKYYTIADLTQGYFGVAIEEESIPLAAFVTSFGLFEWLRCPQGASGAPGAFVTLMQIVLRGLKKVEAFLDDIISHSGIAEGHVAGLKALFDRLREHDLKLSPSKVHIAMLEVKLLGHQVS 726
            I +L  +L  +   FS    D+GHC TLPF I LKPG +P+++RPYR SP++ RK+ +EID+ ++ G++    SNW SP+V + +++G++R+TC++   N  T++P  P P +  ++++LGGSK +++ DL  GYF  AI+E SIPL A  TSFGL EW R PQG SG+P  F +LM                            A L+ L  R  E DLKLSP K HI   EV  LGH ++
Sbjct:   37 IDSLADVLVEHADWFSAHKTDLGHCTTLPFRIDLKPGTRPVKQRPYRRSPVINRKIKIEIDRLVSCGILRKFTSNWASPLVAVLKEDGSLRLTCNFTRSNEATIVPVFPMPLVSDLISALGGSKVFSVLDLMSGYFQAAIDESSIPLTAVCTSFGLSEWTRTPQGYSGSPANFQSLM----------------------------AKLRELLVRFTEFDLKLSPKKAHIGSAEVTFLGHLIT 250          
BLAST of mRNA_S-ischiensis_contig11.2169.1 vs. uniprot
Match: A0A6H5L052_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L052_9PHAE)

HSP 1 Score: 199 bits (507), Expect = 9.580e-57
Identity = 99/243 (40.74%), Postives = 146/243 (60.08%), Query Frame = 1
Query:   10 LGVLLDRYTSVFSKDAWDVGHCKTLPFSIKLKPGAQPMQKRPYRYSPLVERKLNVEIDKFLALGVVSWSKSNWGSPVVCIARKNGNVRVTCDYRSLNAQTVIPAVPFPHIDTILNSLGGSKYYTIADLTQGYFGVAIEEESIPLAAFVTSFGLFEWLRCPQGASGAPGAFVTLMQIVLRGLKKVEAFLDDIISHSGIAEGHVAGLKALFDRLREHDLKLSPSKVHIAMLEVKLLGHQVSAEGV 738
            LG +L  Y  VFS    D G C   PF + + PG+ P+  RPYR +P V ++++  +D++LA G++  S S + S +V I +K+G VR+T +YR LN    +  +P P ID  L+ L     Y++ D+   +  + +  E+IPL AFVTS GLFEWL+ PQG+S APG F  ++  V++ L  V ++LDD+I        HV  ++ALF+RLR H+LKL+P K  I   E   LGH +S +GV
Sbjct:  274 LGNVLCEYHDVFSSSPTDFGSCSLFPFKLAVPPGSAPVTSRPYRVNPPVAKQVDAILDQYLAAGLIQHSTSPYSSALVVILKKSGGVRITVNYRKLNKLCTLSQLPIPRIDDTLDKLLKGHTYSLFDMKSSFHQITVHRETIPLTAFVTSCGLFEWLKMPQGSSAAPGWFCKVVNEVIKNLHGVASYLDDLIVFDNNPAFHVDTMRALFERLRTHNLKLTPPKATIGTTEANFLGHTISPDGV 516          
BLAST of mRNA_S-ischiensis_contig11.2169.1 vs. uniprot
Match: A0A6H5JUZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUZ4_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 2.190e-56
Identity = 98/246 (39.84%), Postives = 149/246 (60.57%), Query Frame = 1
Query:    1 IVALGVLLDRYTSVFSKDAWDVGHCKTLPFSIKLKPGAQPMQKRPYRYSPLVERKLNVEIDKFLALGVVSWSKSNWGSPVVCIARKNGNVRVTCDYRSLNAQTVIPAVPFPHIDTILNSLGGSKYYTIADLTQGYFGVAIEEESIPLAAFVTSFGLFEWLRCPQGASGAPGAFVTLMQIVLRGLKKVEAFLDDIISHSGIAEGHVAGLKALFDRLREHDLKLSPSKVHIAMLEVKLLGHQVSAEGV 738
            I  LG +L  Y  VFS    D G C   PF + + PG+ P+  RPYR +P V ++++  +D++LA G++  S S + SP+V I +K+G VR+T +YR LN    +  +P P +D  L+ L   + Y++ D+   +  + +  ++IPL AFVTS GLFEWL+ PQG+S APG F  ++  V++ L  V ++LDD+I        HV  ++ALF+RLR H+LKL+P K  +   E   LGH +S +GV
Sbjct:  233 ITQLGDVLCEYHDVFSSSPTDFGSCSLFPFKLTVPPGSAPVTSRPYRVNPPVAKQVDAILDQYLAAGLIQHSTSPYSSPLVVIPKKSGGVRITVNYRKLNKLCALSQLPIPRVDDTLDKLLKGRIYSLFDMKSSFHQITVHRDTIPLTAFVTSSGLFEWLKMPQGSSAAPGWFCKVVNEVIKNLHGVASYLDDLIVFDDNPASHVDTMRALFERLRTHNLKLTPPKATVGATEADFLGHTISPDGV 478          
BLAST of mRNA_S-ischiensis_contig11.2169.1 vs. uniprot
Match: A0A6H5JK47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK47_9PHAE)

HSP 1 Score: 203 bits (516), Expect = 4.290e-56
Identity = 97/239 (40.59%), Postives = 147/239 (61.51%), Query Frame = 1
Query:   22 LDRYTSVFSKDAWDVGHCKTLPFSIKLKPGAQPMQKRPYRYSPLVERKLNVEIDKFLALGVVSWSKSNWGSPVVCIARKNGNVRVTCDYRSLNAQTVIPAVPFPHIDTILNSLGGSKYYTIADLTQGYFGVAIEEESIPLAAFVTSFGLFEWLRCPQGASGAPGAFVTLMQIVLRGLKKVEAFLDDIISHSGIAEGHVAGLKALFDRLREHDLKLSPSKVHIAMLEVKLLGHQVSAEGV 738
            L  Y+ VFS    D G C  +PF++ +  G +P+  RPYR +PL+++K++  +D++LA G++  S S W SP+V I +K+G+VR+T +Y+ LNA   +   P P +D IL+SL   K ++I DL   +  +  ++E++PL AF T   LFEWLR PQGA+ +P  FV ++  V+ GL +V A+LDD+I       GHV  +   F RLR+++LKLSP K  +       LGH +S  GV
Sbjct:  725 LFEYSDVFSTSKTDFGSCNIMPFTLSVPAGTKPVASRPYRINPLMQKKVDAVLDQYLAAGLIQHSTSPWASPLVVIPKKDGSVRITVNYKRLNALVDLDGQPLPRVDGILDSLYTGKVFSIFDLNSAFHQIVCDDETVPLTAFCTPTQLFEWLRMPQGANASPSWFVKVINRVVHGLDRVLAYLDDVICFDEEPLGHVLNMIEFFKRLRQYNLKLSPGKARVGATHANFLGHTISPAGV 963          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L269_9PHAE7.620e-7246.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXS4_9PHAE1.920e-7145.53Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KLE7_9PHAE3.560e-7145.53Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KIC8_9PHAE4.490e-6142.39Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L4V5_9PHAE1.470e-5841.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQF4_9PHAE2.840e-5844.55Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K8H1_9PHAE6.520e-5841.32RT_RNaseH domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L052_9PHAE9.580e-5740.74Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JUZ4_9PHAE2.190e-5639.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JK47_9PHAE4.290e-5640.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:1753610..1754347 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score178.7
Seed ortholog evalue3.3e-42
Seed eggNOG ortholog7668.SPU_017376-tr
EggNOG free text desc.retrotransposable element Tf2 155 kDa protein type 1-like
EggNOG OGs38F42@33154,COG2801@1,KOG0017@2759
COG Functional cat.G
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size738
Cds size738
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815603.4078264-CDS-S-ischiensis_contig11:1753609..17543471622815603.4078264-CDS-S-ischiensis_contig11:1753609..1754347Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1753610..1754347 +
1695739797.590217-CDS-S-ischiensis_contig11:1753609..17543471695739797.590217-CDS-S-ischiensis_contig11:1753609..1754347Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1753610..1754347 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2169.1prot_S-ischiensis_contig11.2169.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 1753610..1754347 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2169.1

>prot_S-ischiensis_contig11.2169.1 ID=prot_S-ischiensis_contig11.2169.1|Name=mRNA_S-ischiensis_contig11.2169.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=246bp
IVALGVLLDRYTSVFSKDAWDVGHCKTLPFSIKLKPGAQPMQKRPYRYSP
LVERKLNVEIDKFLALGVVSWSKSNWGSPVVCIARKNGNVRVTCDYRSLN
AQTVIPAVPFPHIDTILNSLGGSKYYTIADLTQGYFGVAIEEESIPLAAF
VTSFGLFEWLRCPQGASGAPGAFVTLMQIVLRGLKKVEAFLDDIISHSGI
AEGHVAGLKALFDRLREHDLKLSPSKVHIAMLEVKLLGHQVSAEGV
back to top

mRNA from alignment at S-ischiensis_contig11:1753610..1754347+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2169.1 ID=mRNA_S-ischiensis_contig11.2169.1|Name=mRNA_S-ischiensis_contig11.2169.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=738bp|location=Sequence derived from alignment at S-ischiensis_contig11:1753610..1754347+ (Schizocladia ischiensis KU_0333)
ATCGTGGCGCTCGGGGTCTTGTTGGACAGATACACGTCGGTGTTTAGTAA GGATGCTTGGGACGTCGGTCACTGCAAGACGCTTCCCTTTAGCATCAAAC TCAAACCCGGCGCGCAACCGATGCAGAAACGACCGTACAGATACTCGCCC CTAGTAGAGCGGAAGCTTAATGTGGAAATAGACAAGTTCTTGGCTTTAGG CGTGGTCTCTTGGAGCAAGAGTAATTGGGGTAGCCCGGTGGTGTGTATTG CTAGGAAGAATGGTAACGTGCGCGTTACATGCGACTACCGTAGCCTGAAT GCCCAGACGGTCATACCCGCGGTTCCCTTCCCGCACATAGATACTATCTT GAATAGCCTGGGGGGCAGTAAGTACTACACTATTGCAGACCTTACTCAGG GCTACTTCGGGGTGGCTATTGAGGAAGAAAGCATTCCGCTAGCGGCATTT GTGACCTCTTTTGGGTTATTTGAATGGCTAAGATGTCCACAGGGGGCCAG TGGGGCACCCGGGGCGTTTGTGACTCTTATGCAGATTGTGTTGAGAGGAC TGAAAAAGGTAGAAGCCTTTCTTGATGACATAATTTCGCACAGTGGCATA GCCGAGGGTCATGTCGCAGGCCTGAAAGCCCTGTTTGACCGCTTGCGGGA ACATGATTTGAAGTTGTCGCCGAGTAAAGTGCATATTGCAATGTTGGAAG TGAAATTGTTAGGCCACCAGGTGTCCGCAGAGGGAGTC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig11:1753610..1754347+

>mRNA_S-ischiensis_contig11.2169.1 ID=mRNA_S-ischiensis_contig11.2169.1|Name=mRNA_S-ischiensis_contig11.2169.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1476bp|location=Sequence derived from alignment at S-ischiensis_contig11:1753610..1754347+ (Schizocladia ischiensis KU_0333)
ATCGTGGCGCTCGGGGTCTTGTTGGACAGATACACGTCGGTGTTTAGTAA
GGATGCTTGGGACGTCGGTCACTGCAAGACGCTTCCCTTTAGCATCAAAC
TCAAACCCGGCGCGCAACCGATGCAGAAACGACCGTACAGATACTCGCCC
CTAGTAGAGCGGAAGCTTAATGTGGAAATAGACAAGTTCTTGGCTTTAGG
CGTGGTCTCTTGGAGCAAGAGTAATTGGGGTAGCCCGGTGGTGTGTATTG
CTAGGAAGAATGGTAACGTGCGCGTTACATGCGACTACCGTAGCCTGAAT
GCCCAGACGGTCATACCCGCGGTTCCCTTCCCGCACATAGATACTATCTT
GAATAGCCTGGGGGGCAGTAAGTACTACACTATTGCAGACCTTACTCAGG
GCTACTTCGGGGTGGCTATTGAGGAAGAAAGCATTCCGCTAGCGGCATTT
GTGACCTCTTTTGGGTTATTTGAATGGCTAAGATGTCCACAGGGGGCCAG
TGGGGCACCCGGGGCGTTTGTGACTCTTATGCAGATTGTGTTGAGAGGAC
TGAAAAAGGTAGAAGCCTTTCTTGATGACATAATTTCGCACAGTGGCATA
GCCGAGGGTCATGTCGCAGGCCTGAAAGCCCTGTTTGACCGCTTGCGGGA
ACATGATTTGAAGTTGTCGCCGAGTAAAGTGCATATTGCAATGTTGGAAG
TGAAATTGTTAGGCCACCAGGTGTCCGCAGAGGGAGTCATCGTGGCGCTC
GGGGTCTTGTTGGACAGATACACGTCGGTGTTTAGTAAGGATGCTTGGGA
CGTCGGTCACTGCAAGACGCTTCCCTTTAGCATCAAACTCAAACCCGGCG
CGCAACCGATGCAGAAACGACCGTACAGATACTCGCCCCTAGTAGAGCGG
AAGCTTAATGTGGAAATAGACAAGTTCTTGGCTTTAGGCGTGGTCTCTTG
GAGCAAGAGTAATTGGGGTAGCCCGGTGGTGTGTATTGCTAGGAAGAATG
GTAACGTGCGCGTTACATGCGACTACCGTAGCCTGAATGCCCAGACGGTC
ATACCCGCGGTTCCCTTCCCGCACATAGATACTATCTTGAATAGCCTGGG
GGGCAGTAAGTACTACACTATTGCAGACCTTACTCAGGGCTACTTCGGGG
TGGCTATTGAGGAAGAAAGCATTCCGCTAGCGGCATTTGTGACCTCTTTT
GGGTTATTTGAATGGCTAAGATGTCCACAGGGGGCCAGTGGGGCACCCGG
GGCGTTTGTGACTCTTATGCAGATTGTGTTGAGAGGACTGAAAAAGGTAG
AAGCCTTTCTTGATGACATAATTTCGCACAGTGGCATAGCCGAGGGTCAT
GTCGCAGGCCTGAAAGCCCTGTTTGACCGCTTGCGGGAACATGATTTGAA
GTTGTCGCCGAGTAAAGTGCATATTGCAATGTTGGAAGTGAAATTGTTAG
GCCACCAGGTGTCCGCAGAGGGAGTC
back to top