mRNA_S-ischiensis_contig11.2150.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2150.1
Unique NamemRNA_S-ischiensis_contig11.2150.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:1608137..1609660 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size395
Cds size393
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815577.9950104-CDS-S-ischiensis_contig11:1608136..16082771622815577.9950104-CDS-S-ischiensis_contig11:1608136..1608277Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1608137..1608277 +
1695739781.7851007-CDS-S-ischiensis_contig11:1608136..16082771695739781.7851007-CDS-S-ischiensis_contig11:1608136..1608277Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1608137..1608277 +
1622815578.007942-CDS-S-ischiensis_contig11:1609407..16096591622815578.007942-CDS-S-ischiensis_contig11:1609407..1609659Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1609408..1609659 +
1695739781.8092546-CDS-S-ischiensis_contig11:1609407..16096591695739781.8092546-CDS-S-ischiensis_contig11:1609407..1609659Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1609408..1609659 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2150.1prot_S-ischiensis_contig11.2150.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 1608137..1609659 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2150.1

>prot_S-ischiensis_contig11.2150.1 ID=prot_S-ischiensis_contig11.2150.1|Name=mRNA_S-ischiensis_contig11.2150.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=131bp
PPRLGPTAPTRDWTAGFTPSSQWLKRFKRQFPGVDGWCGGRFKKEPQTTP
PRPPPPLPPPWAAYFGSDGGVAGRREEPALAPVRVWPDVAPRSHGEVHCV
LAPAPAAAGAAAAGGAGRRDGDPGGDPANAG
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mRNA from alignment at S-ischiensis_contig11:1608137..1609660+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2150.1 ID=mRNA_S-ischiensis_contig11.2150.1|Name=mRNA_S-ischiensis_contig11.2150.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1524bp|location=Sequence derived from alignment at S-ischiensis_contig11:1608137..1609660+ (Schizocladia ischiensis KU_0333)
CCGCCCCGGCTGGGGCCGACCGCGCCCACACGCGATTGGACGGCAGGTTT
CACCCCGTCGAGTCAGTGGCTGAAGCGCTTCAAGCGACAGTTCCCCGGCG
TGGACGGCTGGTGCGGGGGCCGGTTCAAGAAAGAACCTCAAGTGAGCTGA
GCCATGATGGCGGAGACTGCGCTCCCTCCGCGGAAGGGGCCCGGAACTCG
CATACATATATATATATACATATCCTCGTGTGTACTCATGTGGTGCTTGC
CGTAGTCCCGAGACCATTGACCACGCGCCTCGGTCGAGACGGAGCAGTAT
CATCGCAATAGTTTAAGAAGGAGCATTTCGTTGATGTTGTACTTACGTGT
TGGCCCTTCGTGGACAAACAAGTATGCCTGCTGTGGTTGTGTGTGCGTGT
GCGAGTGCGTGTGTGTGTGTGTGTGTGTGTGTGCGCGTGTTTGTGCGTGT
TGCGCGTGTGTCGTACATGGCATGTTTGCGCGCGCGGGCGGGTGTGTGCG
CTTGTGTGCGTGCGCGTGTGTGTGCGTGCGCGCGAGTGCATGCGAGTGTG
CGTGTGTATGTGAGTGTGTGCCCGCGTGCATGTTCATGTGCGTGTGTGTG
CTTGCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTGCACG
TGCGTGTGTGTAAGCGTGTGCACACATGCTTTGCGTGCAATTTTGCGTGT
GCGCGCGCTCACATGCACACAAGCGTGCTTGAAGGGCGCCTTGGCGTGGC
TGCCCAAAGCCAGGAGAAAACTGCGCACACATAAGTACGAAGTACTTAGC
TTCCGTCTACGTATGCATTTGGGTGAGACAGGCAAAGACCGTGCAAGCGC
GCGCTCGGGCCGCTTTTTGTTTTTTAACCGTTTTTAGAGAGCTAGAGGAC
TGCCCGCGTGTCGATCGAGAGGAGCTCGCCGCTGCAGCACGTTTGTTCAC
CAGGTCCTGTACTTGTACATGTCCTCACTCAGAGGCCTGCGGCGCCCGGG
TCCTGTGTGCACAGACAGGGACCATCTCAGAGAGAGACACGCTTCCCAAG
CGCAAGTACTTCGAAGTAGCTAAAGCACGGCGTACTGGTGATAGTGTAAC
GTTCGTGGCCGTTTCGTGCATACCTTACGGCGGGCCCGTTCGTTCAAGTT
GCTCCTGCAGTGACCTTTGCCTGCTCCGCCCCGGCCCACCCACCCCCGAC
CTTCCCCCCCACCGCCGCCGTGACATGACGCACCTATTTTTCATTCCCCC
TCCCGGGGCCGCGGCCGCTAGACAACACCACCAAGGCCACCACCGCCACT
GCCGCCGCCATGGGCCGCCTATTTTGGGAGCGATGGCGGCGTGGCCGGAA
GGAGAGAAGAGCCAGCGCTAGCGCCGGTCCGCGTGTGGCCTGACGTGGCT
CCACGTTCCCATGGCGAGGTGCACTGTGTCCTGGCGCCAGCGCCGGCGGC
GGCAGGGGCGGCTGCGGCGGGGGGGGCAGGGCGCCGGGACGGAGACCCCG
GGGGGGACCCAGCGAACGCGGGAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:1608137..1609660+

>mRNA_S-ischiensis_contig11.2150.1 ID=mRNA_S-ischiensis_contig11.2150.1|Name=mRNA_S-ischiensis_contig11.2150.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=786bp|location=Sequence derived from alignment at S-ischiensis_contig11:1608137..1609660+ (Schizocladia ischiensis KU_0333)
CCGCCCCGGCTGGGGCCGACCGCGCCCACACGCGATTGGACGGCAGGTTT
CACCCCGTCGAGTCAGTGGCTGAAGCGCTTCAAGCGACAGTTCCCCGGCG
TGGACGGCTGGTGCGGGGGCCGGTTCAAGAAAGAACCTCAACCGCCCCGG
CTGGGGCCGACCGCGCCCACACGCGATTGGACGGCAGGTTTCACCCCGTC
GAGTCAGTGGCTGAAGCGCTTCAAGCGACAGTTCCCCGGCGTGGACGGCT
GGTGCGGGGGCCGGTTCAAGAAAGAACCTCAAACAACACCACCAAGGCCA
CCACCGCCACTGCCGCCGCCATGGGCCGCCTATTTTGGGAGCGATGGCGG
CGTGGCCGGAAGGAGAGAAGAGCCAGCGCTAGCGCCGGTCCGCGTGTGGC
CTGACGTGGCTCCACGTTCCCATGGCGAGGTGCACTGTGTCCTGGCGCCA
GCGCCGGCGGCGGCAGGGGCGGCTGCGGCGGGGGGGGCAGGGCGCCGGGA
CGGAGACCCCGGGGGGGACCCAGCGAACGCGGGAACAACACCACCAAGGC
CACCACCGCCACTGCCGCCGCCATGGGCCGCCTATTTTGGGAGCGATGGC
GGCGTGGCCGGAAGGAGAGAAGAGCCAGCGCTAGCGCCGGTCCGCGTGTG
GCCTGACGTGGCTCCACGTTCCCATGGCGAGGTGCACTGTGTCCTGGCGC
CAGCGCCGGCGGCGGCAGGGGCGGCTGCGGCGGGGGGGGCAGGGCGCCGG
GACGGAGACCCCGGGGGGGACCCAGCGAACGCGGGA
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