mRNA_S-ischiensis_contig11.2145.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2145.1
Unique NamemRNA_S-ischiensis_contig11.2145.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig11.2145.1 vs. uniprot
Match: D8LHU9_ECTSI (Diacylglycerol kinase (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHU9_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 1.170e-18
Identity = 41/92 (44.57%), Postives = 56/92 (60.87%), Query Frame = 2
Query:    2 HHWVKGNLHTMHACEGCGNFCGTDGLFGLHGWSCCWCGVQVHDDCVLSVSSSECTMGRHRQLILPPTAVTKSPAPVPGAGRRRIMEAVRSVR 277
            H W++G++     C  CG  C   G  G HG+SC WC +QVH+ C+  ++ +EC++GRHR+LILPPTAV K     P   R  I +AV  VR
Sbjct:  238 HQWMRGSIDDSQPCAACGGSCAGSGATGQHGFSCAWCKLQVHEGCISRMAHTECSLGRHRRLILPPTAVLKDQ---PRKKRGLIRDAVSKVR 326          
BLAST of mRNA_S-ischiensis_contig11.2145.1 vs. uniprot
Match: A0A6H5LB27_9PHAE (Diacylglycerol kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB27_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 3.070e-18
Identity = 41/92 (44.57%), Postives = 55/92 (59.78%), Query Frame = 2
Query:    2 HHWVKGNLHTMHACEGCGNFCGTDGLFGLHGWSCCWCGVQVHDDCVLSVSSSECTMGRHRQLILPPTAVTKSPAPVPGAGRRRIMEAVRSVR 277
            H W++G++     C  CG  C   G  G HG+SC WC +QVH+ C+  V+ +EC++GRHR+LILPP AV K     P   R  I +AV  VR
Sbjct:  248 HQWMRGSIDDSQPCAACGGSCAGSGATGQHGFSCAWCKLQVHEGCISRVTHTECSLGRHRRLILPPIAVLKDQ---PRKKRGLIRDAVSKVR 336          
BLAST of mRNA_S-ischiensis_contig11.2145.1 vs. uniprot
Match: A0A225WSQ2_9STRA (Diacylglycerol kinase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WSQ2_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.270e-11
Identity = 37/99 (37.37%), Postives = 53/99 (53.54%), Query Frame = 2
Query:    2 HHWVKGNLHTMHACEGCGNFCGTDGLFGLHGWSCCWCGVQVHDDCVLSVSSS--------ECTMGRHRQLILPPTAVT-KSPAPVPGAGRRRIMEAVRS 271
            H W+KGN+  M +C  CG FCG+  +  L G  C WC V+VH++C     S          C +GRH  LILPP+ V  + P  +  +  +R + +VRS
Sbjct:  157 HMWIKGNIDPMDSCSLCGLFCGS--ILALSGLKCAWCHVRVHEECFQQALSRTHKPSLLRRCDLGRHANLILPPSCVVLREPVSI-ASKSQRALNSVRS 252          
BLAST of mRNA_S-ischiensis_contig11.2145.1 vs. uniprot
Match: A0A2P4X073_9STRA (Diacylglycerol kinase n=5 Tax=Phytophthora TaxID=4783 RepID=A0A2P4X073_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 4.430e-11
Identity = 36/99 (36.36%), Postives = 53/99 (53.54%), Query Frame = 2
Query:    2 HHWVKGNLHTMHACEGCGNFCGTDGLFGLHGWSCCWCGVQVHDDCVLSVSSS--------ECTMGRHRQLILPPTAVT-KSPAPVPGAGRRRIMEAVRS 271
            H W+KGN+  M +C  CG FCG+  +  L G  C WC V+VH++C     +          C +GRH  LILPP+ V  + P  +  +  +R + +VRS
Sbjct:  157 HMWIKGNIDPMDSCSLCGLFCGS--ILALSGLKCAWCHVRVHEECFQQALARAHKPSLLRRCDLGRHANLILPPSCVILREPVSI-ASKSQRALNSVRS 252          
BLAST of mRNA_S-ischiensis_contig11.2145.1 vs. uniprot
Match: G4ZDJ2_PHYSP (Diacylglycerol kinase n=6 Tax=Phytophthora TaxID=4783 RepID=G4ZDJ2_PHYSP)

HSP 1 Score: 67.0 bits (162), Expect = 6.050e-11
Identity = 31/77 (40.26%), Postives = 42/77 (54.55%), Query Frame = 2
Query:    2 HHWVKGNLHTMHACEGCGNFCGTDGLFGLHGWSCCWCGVQVHDDCVLSVSSS--------ECTMGRHRQLILPPTAV 208
            H W+KGN+  M +C  CG FCG+  +  L G  C WC V+VH++C     +          C +GRH  LILPP+ V
Sbjct:  166 HMWIKGNIDPMDSCSLCGLFCGS--ILALSGLKCAWCHVRVHEECFQQALARAHRPPLLRRCDLGRHANLILPPSCV 240          
BLAST of mRNA_S-ischiensis_contig11.2145.1 vs. uniprot
Match: A0A3M6VCK2_9STRA (Diacylglycerol kinase n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VCK2_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.120e-10
Identity = 31/77 (40.26%), Postives = 41/77 (53.25%), Query Frame = 2
Query:    2 HHWVKGNLHTMHACEGCGNFCGTDGLFGLHGWSCCWCGVQVHDDCVLSVSSS--------ECTMGRHRQLILPPTAV 208
            H W+KGN+     C  CG FCG+  +  L G  C WC V+VH++C     +          CT+GRH  LILPP+ V
Sbjct:   70 HMWIKGNIDPTDLCSFCGLFCGS--ILALSGLKCSWCHVRVHEECFQQAFARTHRPQLLRRCTLGRHANLILPPSCV 144          
BLAST of mRNA_S-ischiensis_contig11.2145.1 vs. uniprot
Match: H3GW58_PHYRM (Diacylglycerol kinase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GW58_PHYRM)

HSP 1 Score: 65.9 bits (159), Expect = 1.540e-10
Identity = 30/77 (38.96%), Postives = 42/77 (54.55%), Query Frame = 2
Query:    2 HHWVKGNLHTMHACEGCGNFCGTDGLFGLHGWSCCWCGVQVHDDCVLSVSSS--------ECTMGRHRQLILPPTAV 208
            H W+KGN+  M +C  CG FCG+  +  L G  C WC V+VH++C     +          C +GRH  LI+PP+ V
Sbjct:  161 HMWIKGNIDPMDSCSLCGLFCGS--ILALSGLKCAWCHVRVHEECFQQALARAHRPLLLRRCDLGRHANLIVPPSCV 235          
BLAST of mRNA_S-ischiensis_contig11.2145.1 vs. uniprot
Match: UPI000522A0A4 (diacylglycerol kinase theta-like n=1 Tax=Haliaeetus albicilla TaxID=8969 RepID=UPI000522A0A4)

HSP 1 Score: 62.8 bits (151), Expect = 5.560e-10
Identity = 31/69 (44.93%), Postives = 39/69 (56.52%), Query Frame = 2
Query:    2 HHWVKGNLHTMHACEGCGNFCGTDGLFGLHGWSCCWCGVQVHDDCVLSVSSSECTMGRHRQLILPPTAV 208
            HHW +GNL +   CE C   C +  +  L G  C WCG+  H  C + V+  ECT GR R +ILPPT V
Sbjct:   67 HHWREGNLSSSARCEVCKKTCSSSEV--LSGMRCEWCGILAHSACYIIVTP-ECTFGRLRNMILPPTCV 132          
BLAST of mRNA_S-ischiensis_contig11.2145.1 vs. uniprot
Match: UPI001486425D (diacylglycerol kinase theta isoform X1 n=4 Tax=Arvicanthis niloticus TaxID=61156 RepID=UPI001486425D)

HSP 1 Score: 63.9 bits (154), Expect = 7.410e-10
Identity = 33/70 (47.14%), Postives = 43/70 (61.43%), Query Frame = 2
Query:    2 HHWVKGNLHTMHACEGCGNFCGT-DGLFGLHGWSCCWCGVQVHDDCVLSVSSSECTMGRHRQLILPPTAV 208
            HHW +GNL +   CE C   CG+ D L G+H   C WCGVQ H  C  +++  ECT GR R ++LPP+ V
Sbjct:  178 HHWREGNLPSGARCEVCRKTCGSSDVLAGVH---CEWCGVQAHSVCSTALTP-ECTFGRLRSMVLPPSCV 243          
BLAST of mRNA_S-ischiensis_contig11.2145.1 vs. uniprot
Match: A0A6P5PRF7_MUSCR (Diacylglycerol kinase n=2 Tax=Mus caroli TaxID=10089 RepID=A0A6P5PRF7_MUSCR)

HSP 1 Score: 63.2 bits (152), Expect = 1.380e-9
Identity = 32/69 (46.38%), Postives = 41/69 (59.42%), Query Frame = 2
Query:    2 HHWVKGNLHTMHACEGCGNFCGTDGLFGLHGWSCCWCGVQVHDDCVLSVSSSECTMGRHRQLILPPTAV 208
            HHW +GNL +   CE C   CG+  +  L G  C WCGVQ H  C  +V + ECT GR R ++LPP+ V
Sbjct:  178 HHWREGNLPSGARCEVCRKTCGSSDV--LAGVRCEWCGVQAHSVCS-TVLAPECTFGRLRSMVLPPSCV 243          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHU9_ECTSI1.170e-1844.57Diacylglycerol kinase (Partial) (Fragment) n=1 Tax... [more]
A0A6H5LB27_9PHAE3.070e-1844.57Diacylglycerol kinase n=1 Tax=Ectocarpus sp. CCAP ... [more]
A0A225WSQ2_9STRA1.270e-1137.37Diacylglycerol kinase n=1 Tax=Phytophthora megakar... [more]
A0A2P4X073_9STRA4.430e-1136.36Diacylglycerol kinase n=5 Tax=Phytophthora TaxID=4... [more]
G4ZDJ2_PHYSP6.050e-1140.26Diacylglycerol kinase n=6 Tax=Phytophthora TaxID=4... [more]
A0A3M6VCK2_9STRA1.120e-1040.26Diacylglycerol kinase n=1 Tax=Peronospora effusa T... [more]
H3GW58_PHYRM1.540e-1038.96Diacylglycerol kinase n=1 Tax=Phytophthora ramorum... [more]
UPI000522A0A45.560e-1044.93diacylglycerol kinase theta-like n=1 Tax=Haliaeetu... [more]
UPI001486425D7.410e-1047.14diacylglycerol kinase theta isoform X1 n=4 Tax=Arv... [more]
A0A6P5PRF7_MUSCR1.380e-946.38Diacylglycerol kinase n=2 Tax=Mus caroli TaxID=100... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:1516973..1517990 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size281
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815577.852293-CDS-S-ischiensis_contig11:1516974..15171321622815577.852293-CDS-S-ischiensis_contig11:1516974..1517132Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1516975..1517132 -
1695739781.6996462-CDS-S-ischiensis_contig11:1516974..15171321695739781.6996462-CDS-S-ischiensis_contig11:1516974..1517132Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1516975..1517132 -
1622815577.862409-CDS-S-ischiensis_contig11:1517869..15179901622815577.862409-CDS-S-ischiensis_contig11:1517869..1517990Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1517870..1517990 -
1695739781.711392-CDS-S-ischiensis_contig11:1517869..15179901695739781.711392-CDS-S-ischiensis_contig11:1517869..1517990Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1517870..1517990 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2145.1prot_S-ischiensis_contig11.2145.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 1516975..1517990 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2145.1

>prot_S-ischiensis_contig11.2145.1 ID=prot_S-ischiensis_contig11.2145.1|Name=mRNA_S-ischiensis_contig11.2145.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=93bp
PPLGEGQPAHHARLRGLRELLRHGRAVWAPRVVLLLVRGPGTRRLCPVSE
LLRVHHGPAPPTHLAPDCGDKEPGACSRRGEAAHYGSCAKRPQ
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mRNA from alignment at S-ischiensis_contig11:1516973..1517990-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2145.1 ID=mRNA_S-ischiensis_contig11.2145.1|Name=mRNA_S-ischiensis_contig11.2145.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1018bp|location=Sequence derived from alignment at S-ischiensis_contig11:1516973..1517990- (Schizocladia ischiensis KU_0333)
CCACCACTGGGTGAAGGGCAACCTGCACACCATGCACGCCTGCGAGGGTT GCGGGAACTTCTGCGGCACGGACGGGCTGTTTGGGCTCCACGGGTGGTCC TGCTGCTGGTGCGGGGTCCAGGTGGGAGGGTGGGCCGAGGGGGCAGGGGG CGGGCGTGCATGCGGGCGGGCAGGCATGCCAGGCGGGTTTTGCATGCGGG CAGGCAGGTGGGCGGGGGTGCCCACGTTCTCACAAGCAGCTGCCCGTTCG TTGAACCTGGCAGTGGGCCAAGCAGGCAGGGAGGTTCGGCAAGCAGGGAT GGAAGCGTTTGAAGCCTTGTTTCCCGGCCCAATATGTAGCCTGGCAGCGC CCTAGTGTGTGACGCGTACTTGCCTATGGTTTTGGTGCACCTGTACCCTG TTCCGCTTGCGCGGCTTCCACGTGCTGTGCGTTACGTTACGTGCTTGGAA GCACTGCTTGCAAGTGTTGTACTGCTGTGCTGTGCGTACTGTAGCGTATG AGCATGACAGTGCGGTGCAGTTGTACTGTACAGTAGTACGAAGTATCTGC TTCCTCTCGTGGAGTACTTTCTTGTGCGCACGCGTCACCACCACTGCCAC CACCACCACACCACCACCACCACCACCACCACCACCGCCACCGCCACCAC CACTACCGCCGTGCTCCTCCTCACCCATCATCATCGTCGTCCGCGCCGTC ACCGCCATCACTACCACCACCGCCACCCACCACTACTACCACCATGCTCC CCCTCACTCATCATCATCGTCATCACCGTGGGCGTCACCATCGCCATCTC CTCCCCCACCACCACCACCATCTTCGTCAACATCATCGTGGCTCTCCTCC TATCCCAGGTACACGACGACTGTGTCCTGTCAGTGAGCTCCTCCGAGTGC ACCATGGGCCGGCACCGCCAACTCATCTTGCCCCCGACTGCGGTGACAAA GAGCCCGGCGCCTGTTCCAGGCGCGGGGAGGCGGCGCATTATGGAAGCTG TGCGAAGCGTCCGCAGCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:1516973..1517990-

>mRNA_S-ischiensis_contig11.2145.1 ID=mRNA_S-ischiensis_contig11.2145.1|Name=mRNA_S-ischiensis_contig11.2145.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=558bp|location=Sequence derived from alignment at S-ischiensis_contig11:1516973..1517990- (Schizocladia ischiensis KU_0333)
CCACCACTGGGTGAAGGGCAACCTGCACACCATGCACGCCTGCGAGGGTT
GCGGGAACTTCTGCGGCACGGACGGGCTGTTTGGGCTCCACGGGTGGTCC
TGCTGCTGGTGCGGGGTCCAGCCACCACTGGGTGAAGGGCAACCTGCACA
CCATGCACGCCTGCGAGGGTTGCGGGAACTTCTGCGGCACGGACGGGCTG
TTTGGGCTCCACGGGTGGTCCTGCTGCTGGTGCGGGGTCCAGGTACACGA
CGACTGTGTCCTGTCAGTGAGCTCCTCCGAGTGCACCATGGGCCGGCACC
GCCAACTCATCTTGCCCCCGACTGCGGTGACAAAGAGCCCGGCGCCTGTT
CCAGGCGCGGGGAGGCGGCGCATTATGGAAGCTGTGCGAAGCGTCCGCAG
GTACACGACGACTGTGTCCTGTCAGTGAGCTCCTCCGAGTGCACCATGGG
CCGGCACCGCCAACTCATCTTGCCCCCGACTGCGGTGACAAAGAGCCCGG
CGCCTGTTCCAGGCGCGGGGAGGCGGCGCATTATGGAAGCTGTGCGAAGC
GTCCGCAG
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