mRNA_S-ischiensis_contig11.2127.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2127.1
Unique NamemRNA_S-ischiensis_contig11.2127.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:1377143..1377706 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size564
Cds size366
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2127.1prot_S-ischiensis_contig11.2127.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 1377325..1377690 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815582.9502285-UTR-S-ischiensis_contig11:1377142..13773241622815582.9502285-UTR-S-ischiensis_contig11:1377142..1377324Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 1377143..1377324 +
1695739784.5371184-UTR-S-ischiensis_contig11:1377142..13773241695739784.5371184-UTR-S-ischiensis_contig11:1377142..1377324Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 1377143..1377324 +
1622815582.976375-UTR-S-ischiensis_contig11:1377690..13777061622815582.976375-UTR-S-ischiensis_contig11:1377690..1377706Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 1377691..1377706 +
1695739784.5560477-UTR-S-ischiensis_contig11:1377690..13777061695739784.5560477-UTR-S-ischiensis_contig11:1377690..1377706Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 1377691..1377706 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815582.9643502-CDS-S-ischiensis_contig11:1377324..13776901622815582.9643502-CDS-S-ischiensis_contig11:1377324..1377690Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1377325..1377690 +
1695739784.5466585-CDS-S-ischiensis_contig11:1377324..13776901695739784.5466585-CDS-S-ischiensis_contig11:1377324..1377690Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1377325..1377690 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2127.1

>prot_S-ischiensis_contig11.2127.1 ID=prot_S-ischiensis_contig11.2127.1|Name=mRNA_S-ischiensis_contig11.2127.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=122bp
MCPPLPPRAPCPVSASGPLTQPPVFPLVAMDRNHAGIHALDVWRSRSCQH
LKFSTVLCKNGSPLSTPTPHRQSSVCGMQGNAVLHSTNAWSRLYAVWPSG
PSLAWRWRNSVPMPGRRALPT*
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mRNA from alignment at S-ischiensis_contig11:1377143..1377706+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2127.1 ID=mRNA_S-ischiensis_contig11.2127.1|Name=mRNA_S-ischiensis_contig11.2127.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=564bp|location=Sequence derived from alignment at S-ischiensis_contig11:1377143..1377706+ (Schizocladia ischiensis KU_0333)
CCTCCTTCTTGTTCTCCTCGGCAGCTCCACTGTCACTACCATCGCCGCTG
CCGCCGCCGCCACCGCCGAGGTATATCTCCTCCTCCTCGTTCTCCTCGGC
AGCTGCTACTCCAGTGCCGCCTCCAGCAGGCGAAGGCAAAGGTTTTGCTG
CCCTGCCTCCGCCAAATGAAGCCATTGCAAGGATGTGCCCTCCTCTACCA
CCAAGGGCACCGTGTCCGGTGAGCGCCTCTGGCCCTCTTACCCAGCCTCC
TGTTTTTCCCTTGGTAGCGATGGACCGGAATCATGCCGGCATTCATGCAC
TTGACGTTTGGCGTTCACGGTCCTGCCAACACTTGAAGTTCTCTACTGTT
CTCTGCAAGAACGGCAGCCCGCTCTCCACGCCCACCCCTCATCGCCAGTC
TTCCGTGTGTGGTATGCAGGGCAACGCGGTTTTGCACTCGACAAACGCGT
GGTCGCGCTTGTACGCCGTGTGGCCTTCCGGCCCCAGCTTGGCGTGGCGA
TGGCGGAACAGCGTCCCCATGCCGGGAAGAAGAGCCTTGCCGACCTGATC
CGAGGAGAAGAACT
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:1377143..1377706+

>mRNA_S-ischiensis_contig11.2127.1 ID=mRNA_S-ischiensis_contig11.2127.1|Name=mRNA_S-ischiensis_contig11.2127.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=732bp|location=Sequence derived from alignment at S-ischiensis_contig11:1377143..1377706+ (Schizocladia ischiensis KU_0333)
ATGTGCCCTCCTCTACCACCAAGGGCACCGTGTCCGGTGAGCGCCTCTGG
CCCTCTTACCCAGCCTCCTGTTTTTCCCTTGGTAGCGATGGACCGGAATC
ATGCCGGCATTCATGCACTTGACGTTTGGCGTTCACGGTCCTGCCAACAC
TTGAAGTTCTCTACTGTTCTCTGCAAGAACGGCAGCCCGCTCTCCACGCC
CACCCCTCATCGCCAGTCTTCCGTGTGTGGTATGCAGGGCAACGCGGTTT
TGCACTCGACAAACGCGTGGTCGCGCTTGTACGCCGTGTGGCCTTCCGGC
CCCAGCTTGGCGTGGCGATGGCGGAACAGCGTCCCCATGCCGGGAAGAAG
AGCCTTGCCGACCTGAATGTGCCCTCCTCTACCACCAAGGGCACCGTGTC
CGGTGAGCGCCTCTGGCCCTCTTACCCAGCCTCCTGTTTTTCCCTTGGTA
GCGATGGACCGGAATCATGCCGGCATTCATGCACTTGACGTTTGGCGTTC
ACGGTCCTGCCAACACTTGAAGTTCTCTACTGTTCTCTGCAAGAACGGCA
GCCCGCTCTCCACGCCCACCCCTCATCGCCAGTCTTCCGTGTGTGGTATG
CAGGGCAACGCGGTTTTGCACTCGACAAACGCGTGGTCGCGCTTGTACGC
CGTGTGGCCTTCCGGCCCCAGCTTGGCGTGGCGATGGCGGAACAGCGTCC
CCATGCCGGGAAGAAGAGCCTTGCCGACCTGA
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