mRNA_S-ischiensis_contig11.2106.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2106.1
Unique NamemRNA_S-ischiensis_contig11.2106.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig11.2106.1 vs. uniprot
Match: A0A3R7XEM9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7XEM9_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 3.200e-9
Identity = 24/45 (53.33%), Postives = 35/45 (77.78%), Query Frame = -1 
Query:  352 VSHLKQHGQRVTCLALYTDDVHALSVSRDRSLICWDLRSENQVGA 486
            VSHLK+H   +T LAL+ DDVH +S SRD+S +CW+LR+E ++ +
Sbjct:   23 VSHLKEHSMAITGLALFEDDVHLVSCSRDKSFLCWELRTERRIAS 67
[Close]
BLAST of mRNA_S-ischiensis_contig11.2106.1 vs. uniprot
Match: A0A418E565_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418E565_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 6.340e-9
Identity = 24/45 (53.33%), Postives = 35/45 (77.78%), Query Frame = -1 
Query:  352 VSHLKQHGQRVTCLALYTDDVHALSVSRDRSLICWDLRSENQVGA 486
            VSHLK+H   +T LAL+ DDVH +S SRD+S +CW+LR+E ++ +
Sbjct:   51 VSHLKEHSMAITGLALFEDDVHLVSCSRDKSFLCWELRTERRIAS 95
[Close]
BLAST of mRNA_S-ischiensis_contig11.2106.1 vs. uniprot
Match: A0A7S1G408_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G408_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 4.250e-8
Identity = 27/45 (60.00%), Postives = 34/45 (75.56%), Query Frame = -1 
Query:  352 VSHLKQHGQRVTCLALYTDDVHALSVSRDRSLICWDLRSENQVGA 486
            VSHLK+H   VT L L+ DDVHALS SRDRS +CWDL+ E ++ +
Sbjct:  521 VSHLKEHTMGVTRLTLFDDDVHALSCSRDRSFLCWDLKREKRISS 565
[Close]
BLAST of mRNA_S-ischiensis_contig11.2106.1 vs. uniprot
Match: A0A397D0D8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397D0D8_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 4.530e-8
Identity = 24/45 (53.33%), Postives = 35/45 (77.78%), Query Frame = -1 
Query:  352 VSHLKQHGQRVTCLALYTDDVHALSVSRDRSLICWDLRSENQVGA 486
            VSHLK+H   +T LAL+ DDVH +S SRD+S +CW+LR+E ++ +
Sbjct:  157 VSHLKEHSMAITGLALFEDDVHLVSCSRDKSFLCWELRTERRIAS 201
[Close]
BLAST of mRNA_S-ischiensis_contig11.2106.1 vs. uniprot
Match: A0A8J5XUL4_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XUL4_DIALT)

HSP 1 Score: 54.7 bits (130), Expect = 1.390e-5
Identity = 31/69 (44.93%), Postives = 42/69 (60.87%), Query Frame = -1 
Query:  295 VSHLKQHGQRVTCLALYTDDVHALSVSRDRSLICWDLRSENQV-----GASPATFAVSLLPASLPPTKI 486
            VSHL QH  +VT LAL  DD+   S S+D++ ICWDLR E ++     GA     A++LLPA  P  ++
Sbjct:  467 VSHLVQHDDQVTSLALSDDDLLLYSASKDKTFICWDLRLEKRLVSHAQGAGGMN-AIALLPAPTPEKQV 534
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A3R7XEM9_9STRA3.200e-953.33Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A418E565_9STRA6.340e-953.33Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A7S1G408_9STRA4.250e-860.00Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A397D0D8_9STRA4.530e-853.33Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A8J5XUL4_DIALT1.390e-544.93Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:1242049..1242562 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size514
Cds size513
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815582.8425412-CDS-S-ischiensis_contig11:1242048..12425611622815582.8425412-CDS-S-ischiensis_contig11:1242048..1242561Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1242049..1242561 +
1695739784.5024366-CDS-S-ischiensis_contig11:1242048..12425611695739784.5024366-CDS-S-ischiensis_contig11:1242048..1242561Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1242049..1242561 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2106.1prot_S-ischiensis_contig11.2106.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 1242049..1242561 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2106.1

>prot_S-ischiensis_contig11.2106.1 ID=prot_S-ischiensis_contig11.2106.1|Name=mRNA_S-ischiensis_contig11.2106.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=171bp
GACGTCRYYCNVAYALYCTVLDSTAHSCTVQYVQDAQCSKVLYCALQYVA
VLYCSVRVLYSTAVPTARYAHTALRTCGDLEALYCSLRWWVQCHRFRANL
GGRQRSGQQRHSKRSGTGTHLIFTSQVPTDERAIPRHRQSVYVIRVQGQA
GYSLAVLLQMAHLRNRRRQVR
back to top

mRNA from alignment at S-ischiensis_contig11:1242049..1242562+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2106.1 ID=mRNA_S-ischiensis_contig11.2106.1|Name=mRNA_S-ischiensis_contig11.2106.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=514bp|location=Sequence derived from alignment at S-ischiensis_contig11:1242049..1242562+ (Schizocladia ischiensis KU_0333)
GGTGCTTGCGGCACTTGCAGGTACTACTGCAACGTAGCCTATGCGCTGTA
TTGTACTGTACTGGACAGTACTGCACATTCTTGTACTGTACAGTACGTAC
AGGACGCACAGTGCAGTAAAGTACTGTACTGCGCTTTACAGTACGTTGCA
GTACTGTACTGTTCTGTACGAGTACTGTACTCCACAGCTGTACCTACTGC
ACGGTACGCGCACACTGCGCTTCGTACATGCGGTGACTTGGAAGCACTAT
ACTGTAGTTTGCGGTGGTGGGTACAATGCCACCGCTTCCGTGCAAATCTT
GGTGGGAGGCAGAGAAGCGGGCAGCAAAGACACAGCAAACGTAGCGGGAC
TGGCACCCACCTGATTTTCACTTCGCAGGTCCCAACAGATGAGCGAGCGA
TCCCTCGACACAGACAGAGCGTGTACGTCATCCGTGTACAGGGCCAGGCA
GGTTACTCGCTGGCCGTGCTGCTTCAGATGGCTCACCTGCGCAACCGCCG
CCGCCAGGTCAGGG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig11:1242049..1242562+

>mRNA_S-ischiensis_contig11.2106.1 ID=mRNA_S-ischiensis_contig11.2106.1|Name=mRNA_S-ischiensis_contig11.2106.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1026bp|location=Sequence derived from alignment at S-ischiensis_contig11:1242049..1242562+ (Schizocladia ischiensis KU_0333)
GGTGCTTGCGGCACTTGCAGGTACTACTGCAACGTAGCCTATGCGCTGTA
TTGTACTGTACTGGACAGTACTGCACATTCTTGTACTGTACAGTACGTAC
AGGACGCACAGTGCAGTAAAGTACTGTACTGCGCTTTACAGTACGTTGCA
GTACTGTACTGTTCTGTACGAGTACTGTACTCCACAGCTGTACCTACTGC
ACGGTACGCGCACACTGCGCTTCGTACATGCGGTGACTTGGAAGCACTAT
ACTGTAGTTTGCGGTGGTGGGTACAATGCCACCGCTTCCGTGCAAATCTT
GGTGGGAGGCAGAGAAGCGGGCAGCAAAGACACAGCAAACGTAGCGGGAC
TGGCACCCACCTGATTTTCACTTCGCAGGTCCCAACAGATGAGCGAGCGA
TCCCTCGACACAGACAGAGCGTGTACGTCATCCGTGTACAGGGCCAGGCA
GGTTACTCGCTGGCCGTGCTGCTTCAGATGGCTCACCTGCGCAACCGCCG
CCGCCAGGTCAGGGGTGCTTGCGGCACTTGCAGGTACTACTGCAACGTAG
CCTATGCGCTGTATTGTACTGTACTGGACAGTACTGCACATTCTTGTACT
GTACAGTACGTACAGGACGCACAGTGCAGTAAAGTACTGTACTGCGCTTT
ACAGTACGTTGCAGTACTGTACTGTTCTGTACGAGTACTGTACTCCACAG
CTGTACCTACTGCACGGTACGCGCACACTGCGCTTCGTACATGCGGTGAC
TTGGAAGCACTATACTGTAGTTTGCGGTGGTGGGTACAATGCCACCGCTT
CCGTGCAAATCTTGGTGGGAGGCAGAGAAGCGGGCAGCAAAGACACAGCA
AACGTAGCGGGACTGGCACCCACCTGATTTTCACTTCGCAGGTCCCAACA
GATGAGCGAGCGATCCCTCGACACAGACAGAGCGTGTACGTCATCCGTGT
ACAGGGCCAGGCAGGTTACTCGCTGGCCGTGCTGCTTCAGATGGCTCACC
TGCGCAACCGCCGCCGCCAGGTCAGG
back to top