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Homology
BLAST of mRNA_S-ischiensis_contig11.2099.1 vs. uniprot
Match: A0A7S0QEW9_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QEW9_9CRYP) HSP 1 Score: 66.2 bits (160), Expect = 1.140e-9 Identity = 46/183 (25.14%), Postives = 79/183 (43.17%), Query Frame = 2
Query: 197 LVRLPWAISTTIIHYAGIQDVIALASTCTGLKGLASVGEYWRAACAARFDNLDSVKYDA---ESLFKMLFWRTEGGSFSALTTVDMASSQDQIDERPDNTLKRSLCARHIGSLSTTGLPAGIAYDPATGLHPCVRYQMTCGCCRGRPCYWSSAPSEKADTDEWISYTMDPALACLITSISITP 736
L+ L + ++ + +++LA C + S WR R D +++ L + + W S + +SS+D+ +ERP++ L S CA + + A +H C C GRPCYWSSAP+E + EW++ + + CLITS+++ P
Sbjct: 9 LLSLQIEVWEVVVDHIEFNHMVSLAQCCREFRTTFSEDLLWRVNLKRRIDIHGTLRLQGLTFRQLAEEVEWALRRPSAQLARGILGSSSRDREEERPEHVLAWSQCAAF----------PDVVPENAQHIH--------CQCAAGRPCYWSSAPTEDLQSSEWLTLQLAGEV-CLITSLAVHP 172
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 86.7 |
| Seed ortholog evalue | 1.6e-14 |
| Seed eggNOG ortholog | 115417.EPrPW00000016004 |
| EggNOG free text desc. | Source PGD |
| EggNOG OGs | 1MEQ9@121069,KOG0266@1,KOG0266@2759 |
| COG Functional cat. | S |
| Best tax level | Pythiales |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | conserved unknown protein |
| Ec32 ortholog | Ec-10_006260.1 |
| Exons | 4 |
| Model size | 820 |
| Cds size | 681 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815597.5810275-UTR-S-ischiensis_contig11:1186046..1186116 | 1622815597.5810275-UTR-S-ischiensis_contig11:1186046..1186116 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig11 1186047..1186116 + |
| 1695739793.7656305-UTR-S-ischiensis_contig11:1186046..1186116 | 1695739793.7656305-UTR-S-ischiensis_contig11:1186046..1186116 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig11 1186047..1186116 + |
| 1622815597.6364677-UTR-S-ischiensis_contig11:1188224..1188293 | 1622815597.6364677-UTR-S-ischiensis_contig11:1188224..1188293 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig11 1188225..1188293 + |
| 1695739793.8261192-UTR-S-ischiensis_contig11:1188224..1188293 | 1695739793.8261192-UTR-S-ischiensis_contig11:1188224..1188293 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig11 1188225..1188293 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815597.5916524-CDS-S-ischiensis_contig11:1186116..1186422 | 1622815597.5916524-CDS-S-ischiensis_contig11:1186116..1186422 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig11 1186117..1186422 + |
| 1695739793.7799563-CDS-S-ischiensis_contig11:1186116..1186422 | 1695739793.7799563-CDS-S-ischiensis_contig11:1186116..1186422 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig11 1186117..1186422 + |
| 1622815597.6026134-CDS-S-ischiensis_contig11:1186637..1186733 | 1622815597.6026134-CDS-S-ischiensis_contig11:1186637..1186733 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig11 1186638..1186733 + |
| 1695739793.7938824-CDS-S-ischiensis_contig11:1186637..1186733 | 1695739793.7938824-CDS-S-ischiensis_contig11:1186637..1186733 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig11 1186638..1186733 + |
| 1622815597.6172109-CDS-S-ischiensis_contig11:1187079..1187213 | 1622815597.6172109-CDS-S-ischiensis_contig11:1187079..1187213 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig11 1187080..1187213 + |
| 1695739793.8035934-CDS-S-ischiensis_contig11:1187079..1187213 | 1695739793.8035934-CDS-S-ischiensis_contig11:1187079..1187213 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig11 1187080..1187213 + |
| 1622815597.6269941-CDS-S-ischiensis_contig11:1188079..1188224 | 1622815597.6269941-CDS-S-ischiensis_contig11:1188079..1188224 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig11 1188080..1188224 + |
| 1695739793.8120425-CDS-S-ischiensis_contig11:1188079..1188224 | 1695739793.8120425-CDS-S-ischiensis_contig11:1188079..1188224 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig11 1188080..1188224 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig11.2099.1 >prot_S-ischiensis_contig11.2099.1 ID=prot_S-ischiensis_contig11.2099.1|Name=mRNA_S-ischiensis_contig11.2099.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=227bp
MDPGSEVPQEVAVSLDDSVEFLQRKANSLFVSVSPAEAGDCPLVRLPWAI
STTIIHYAGIQDVIALASTCTGLKGLASVGEYWRAACAARFDNLDSVKYD
AESLFKMLFWRTEGGSFSALTTVDMASSQDQIDERPDNTLKRSLCARHIG
SLSTTGLPAGIAYDPATGLHPCVRYQMTCGCCRGRPCYWSSAPSEKADTD
EWISYTMDPALACLITSISITPYTVS* back to topmRNA from alignment at S-ischiensis_contig11:1186047..1188293+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig11.2099.1 ID=mRNA_S-ischiensis_contig11.2099.1|Name=mRNA_S-ischiensis_contig11.2099.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2247bp|location=Sequence derived from alignment at S-ischiensis_contig11:1186047..1188293+ (Schizocladia ischiensis KU_0333)
CAGGGCGCTGTTGCACCTGCAGCTGTGTGCGAGGTCGATCGTTCAGGAAT
TGGATTGAGCATCGTCCGGCATGGATCCTGGCAGCGAGGTCCCCCAGGAG
GTGGCCGTGTCTTTGGATGACTCTGTTGAGTTTCTGCAGCGAAAAGCGAA
CAGCTTATTCGTTTCTGTTTCTCCTGCCGAGGCGGGCGATTGCCCGCTGG
TGAGGCTCCCATGGGCAATCTCGACCACCATCATCCACTATGCAGGCATT
CAGGACGTGATTGCTCTAGCTTCCACGTGTACCGGCCTCAAGGGCCTCGC
CTCGGTCGGGGAGTATTGGCGGGCAGCCTGTGCGGCCCGATTCGACAACC
TGGACAGTGTGAAGTACGATGCGGAGGTGAGTTGCTGCCACATGCACGAT
GAGGAGGCCGCTTGACTCGGCATTTTTTTGGGGGGGGGCGCCAGTCTCTG
TTGCCAGCATGGTACAGTCACCCGGCATGCCTTCTGCCTTCCTCTCCTCC
AAACCCGACCCAAGGGCAGATCCATCCCCGTTGAACCTGACCCCGCCCCC
CAACAACCCCCGCTCGCCTGGTGCGGCCCACCTTTCACCAGAGCCTTTTC
AAGATGCTGTTCTGGCGGACAGAGGGTGGCTCCTTCTCTGCCCTTACCAC
CGTCGACATGGCCTCCTCACAGGACCAGATTGATGAGGTTGGTGTGGCTG
CCTCTGCTGCAGCGTCGATTGAATAGGCACAGCATCACTCGAACGGTATT
CGCGCTTTTCCTCCCGTGGATTCGAAACAGGGAGGGTTTGCCATATGTGC
ACGACCCACACAGGCCGTATCCTTGGAAGCAGTGCAATATCGAATGCCTA
CTAATAGCAACACAATGGTAAGAGCTACTGTACACACAGCGGTCGATGTT
GGCGTGGGTAACACATTAGCTTGCTCTTTTAGCTGCCCACGTGCTTCCCC
GAACAAATTGGCTAATGCAGACGACTATTTTTTTAAGTACTTCCCTTTCT
GCCCCTATGCGCCGACGGCCGCGGACCCCGCAGCGCCCGGACAACACGCT
CAAGAGATCGCTCTGCGCGCGGCACATTGGGTCCCTCAGCACCACCGGTC
TGCCCGCGGGGATCGCCTACGACCCTGCGACGGGCCTGCACCCCTGCGTG
AGGTACCAGATGACCTGGTGAGAGGGTCGGCGACACCAGAAGGACCTCGC
CCGTGCAAACCCCCGTAAACACAACTTCCTTTTTATTTCTTTCTACCGCT
GCGCTTTGTCGGTTGTTGGCTGGTAAGTAGGTACGCCATACGTCGCGACA
GTATTGTGCTAACCTAGCAGAGGGTCGTGCTTGGAAGTACAGTTGTCCAA
GCGCTCTGTACTTGCGCTACAGTGTGAGCAGCTGCCATGCGCTTTGGGGT
TGCGGCACGTAAGTGCACGTTGGGTTCGTCGCGGAAAAGTCTGGTCGTTC
CCTTTTGTTCCCCCGGGGCCGGGGGTCGGAGAGGGCGAACATTTGGAGGG
GTCCGTTTGCAATCCACCCTTTGCGGACAGTGGTGCGCTGTAGAGTATAT
ATATGTACTCATGTTGTGCTTGCCGTAGTCCCGAGACCATTGACCACGCG
CCTCGGTCGAGACGGAGCAGTAGAGTACAGTCGGTACTGTAGTGTTCTCG
TGTAGGAGGTCATAGTACAGTACGGTACGGTAGTCGCCTATGGGATGGAC
GTACAGTACTGCTACCCTCTAGTCGGAAGTGTTTGTTGTTCCGCTCGGTG
CACCGCTGTGATAGTGCACGATCGCTGGCGCTTAGTAGCATGTACTTCGA
AGTACGTCATAGACGCTGTAAGTTGCAATACCACTCTGAAGCCACGGGAA
GAAGCGCCGATTCAATAACTGTGAGGAGATGCAAGGGGCCATCCTCCGTG
GCCAACGGTACTTGTAGGGGGACAATCCCAGCAACGCACACACACACACA
CCAAGTGTGTGAATGAACTCATTGTGTGCCCCCCCCCTCTCCCTCATGCC
TGCAACCTGTGGCTACCGTGACGGTCATGACAGCGGCTGTTGCCGCGGCC
GTCCGTGCTACTGGTCCAGCGCCCCGTCGGAGAAGGCGGACACGGACGAA
TGGATCTCGTACACCATGGACCCCGCCCTGGCTTGCCTCATCACTTCCAT
CTCCATAACCCCCTACACGGTGAGCTGACCTGCTTGACCCGTGCTGCCTT
GGTGTTTGGAGCACTGCGGCAGCTCTACGCTGATTGATGCTTTGATG back to topCoding sequence (CDS) from alignment at S-ischiensis_contig11:1186047..1188293+ >mRNA_S-ischiensis_contig11.2099.1 ID=mRNA_S-ischiensis_contig11.2099.1|Name=mRNA_S-ischiensis_contig11.2099.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1362bp|location=Sequence derived from alignment at S-ischiensis_contig11:1186047..1188293+ (Schizocladia ischiensis KU_0333)
ATGGATCCTGGCAGCGAGGTCCCCCAGGAGGTGGCCGTGTCTTTGGATGA
CTCTGTTGAGTTTCTGCAGCGAAAAGCGAACAGCTTATTCGTTTCTGTTT
CTCCTGCCGAGGCGGGCGATTGCCCGCTGGTGAGGCTCCCATGGGCAATC
TCGACCACCATCATCCACTATGCAGGCATTCAGGACGTGATTGCTCTAGC
TTCCACGTGTACCGGCCTCAAGGGCCTCGCCTCGGTCGGGGAGTATTGGC
GGGCAGCCTGTGCGGCCCGATTCGACAACCTGGACAGTGTGAAGTACGAT
GCGGAGATGGATCCTGGCAGCGAGGTCCCCCAGGAGGTGGCCGTGTCTTT
GGATGACTCTGTTGAGTTTCTGCAGCGAAAAGCGAACAGCTTATTCGTTT
CTGTTTCTCCTGCCGAGGCGGGCGATTGCCCGCTGGTGAGGCTCCCATGG
GCAATCTCGACCACCATCATCCACTATGCAGGCATTCAGGACGTGATTGC
TCTAGCTTCCACGTGTACCGGCCTCAAGGGCCTCGCCTCGGTCGGGGAGT
ATTGGCGGGCAGCCTGTGCGGCCCGATTCGACAACCTGGACAGTGTGAAG
TACGATGCGGAGAGCCTTTTCAAGATGCTGTTCTGGCGGACAGAGGGTGG
CTCCTTCTCTGCCCTTACCACCGTCGACATGGCCTCCTCACAGGACCAGA
TTGATGAGAGCCTTTTCAAGATGCTGTTCTGGCGGACAGAGGGTGGCTCC
TTCTCTGCCCTTACCACCGTCGACATGGCCTCCTCACAGGACCAGATTGA
TGAGCGCCCGGACAACACGCTCAAGAGATCGCTCTGCGCGCGGCACATTG
GGTCCCTCAGCACCACCGGTCTGCCCGCGGGGATCGCCTACGACCCTGCG
ACGGGCCTGCACCCCTGCGTGAGGTACCAGATGACCTGCGCCCGGACAAC
ACGCTCAAGAGATCGCTCTGCGCGCGGCACATTGGGTCCCTCAGCACCAC
CGGTCTGCCCGCGGGGATCGCCTACGACCCTGCGACGGGCCTGCACCCCT
GCGTGAGGTACCAGATGACCTGCGGCTGTTGCCGCGGCCGTCCGTGCTAC
TGGTCCAGCGCCCCGTCGGAGAAGGCGGACACGGACGAATGGATCTCGTA
CACCATGGACCCCGCCCTGGCTTGCCTCATCACTTCCATCTCCATAACCC
CCTACACGGTGAGCTGACGGCTGTTGCCGCGGCCGTCCGTGCTACTGGTC
CAGCGCCCCGTCGGAGAAGGCGGACACGGACGAATGGATCTCGTACACCA
TGGACCCCGCCCTGGCTTGCCTCATCACTTCCATCTCCATAACCCCCTAC
ACGGTGAGCTGA back to top
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