mRNA_S-ischiensis_contig11.2097.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2097.1
Unique NamemRNA_S-ischiensis_contig11.2097.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig11.2097.1 vs. uniprot
Match: A0A836CK22_9STRA (Elongation factor P (EF-P) KOW-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK22_9STRA)

HSP 1 Score: 268 bits (685), Expect = 1.100e-83
Identity = 129/187 (68.98%), Postives = 157/187 (83.96%), Query Frame = 2 
Query:  236 MITTADFKNGLTIEIDGAPVKITEFLHVKPGKGSAFVRSKLKNLITGNTVEKTFRAGESMELAQVDRMDLQYTYADEDNFNFMDSVTYEEVSIARSVVGDTAGYMSEGMTVEALKWNGKVIDFSVPSTMTFTVAQTDPGVKGNTAQGGSKPATLETGAVISVPLFIAEGEKIRVDTVNKKYMSRANE 796
            M +T+DFK GLTIE+DGAPV++ EFLHVKPGKG+AFVRSKLKNLITGNTVEKTFRAGE + LAQV+R+ LQ+TY D  NF FMD+ ++EEV +A+S++GD A ++ EGM +EAL+W  ++ID S+P TM  TV QTDPGVKGNTAQGGSKPATLETG V+ VPLFI EGEKI+VDT  +KYM R+ E
Sbjct:    1 MASTSDFKTGLTIEVDGAPVRVQEFLHVKPGKGAAFVRSKLKNLITGNTVEKTFRAGEPITLAQVERLTLQFTYDDGTNFCFMDTTSFEEVQMAKSILGDKADWLQEGMQLEALQWTDRIIDVSIPRTMVLTVTQTDPGVKGNTAQGGSKPATLETGVVLQVPLFINEGEKIKVDTEERKYMERSKE 187
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BLAST of mRNA_S-ischiensis_contig11.2097.1 vs. uniprot
Match: D7FX61_ECTSI (Elongation factor P n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX61_ECTSI)

HSP 1 Score: 256 bits (653), Expect = 6.720e-78
Identity = 142/237 (59.92%), Postives = 170/237 (71.73%), Query Frame = 2 
Query:  116 VLVTEAFMGPTRAY-QGSFVARLSPQ-----WVGAT---PARGLAAG-LSMITTADFKNGLTIEIDGAPVKITEFLHVKPGKGSAFVRSKLKNLITGNTVEKTFRAGESMELAQVDRMDLQYTYADEDNFNFMDSVTYEEVSIARSVVGDTAGYMSEGMTVEALKWNGKVIDFSVPSTMTFTVAQTDPGVKGNTAQGGSKPATLETGAVISVPLFIAEGEKIRVDTVNKKYMSRANE 796
            +L  EAF+ P+    QGSF  +   Q     W  A     ARG   G LSM +TADFKNG+TI+IDG P KI EFLHVKPGKGSAFVR+K+KNLITGN++EKTFRAGE +E AQVD++DLQYTY + D + FMDS TYEEVSIA  VVGD AG+  EGM + A  + GKVI+ ++P  M   V +TDPG KGNTAQG +KPA +  GA+I+VPLFI  GEKIRVD  +KKYM RA E
Sbjct:   21 LLGAEAFVLPSATLRQGSFAQQQQQQRGVTRWTAAAGPRTARGGGVGALSMGSTADFKNGMTIDIDGNPCKILEFLHVKPGKGSAFVRTKVKNLITGNSLEKTFRAGEPVEQAQVDKVDLQYTYKEGDMYYFMDSATYEEVSIAEKVVGDKAGFFLEGMELSATYFKGKVIEVTLPKQMILEVVETDPGEKGNTAQGATKPAKVAAGAIINVPLFITTGEKIRVDIDSKKYMERAKE 257
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BLAST of mRNA_S-ischiensis_contig11.2097.1 vs. uniprot
Match: A0A6H5KN57_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN57_9PHAE)

HSP 1 Score: 249 bits (635), Expect = 3.110e-76
Identity = 125/187 (66.84%), Postives = 150/187 (80.21%), Query Frame = 2 
Query:  236 MITTADFKNGLTIEIDGAPVKITEFLHVKPGKGSAFVRSKLKNLITGNTVEKTFRAGESMELAQVDRMDLQYTYADEDNFNFMDSVTYEEVSIARSVVGDTAGYMSEGMTVEALKWNGKVIDFSVPSTMTFTVAQTDPGVKGNTAQGGSKPATLETGAVISVPLFIAEGEKIRVDTVNKKYMSRANE 796
            M +TADFKNG+TI+IDG P KI EFLHVKPGKGSAFVR+K+KNLITGN++EKTFRAGE +E AQVD++DLQYTY + D + FMDS TYEEVSIA  VVGD AG+  EGM + A  + GKVI+ ++P  M   V +TDPG KGNTAQG +KPA + +GA+I+VPLFI  GEKIRVDT +KKYM RA E
Sbjct:    1 MGSTADFKNGMTIDIDGNPCKILEFLHVKPGKGSAFVRTKVKNLITGNSLEKTFRAGEPVEQAQVDKLDLQYTYKEGDMYYFMDSATYEEVSIAEKVVGDKAGFFLEGMELSATYFKGKVIEVTLPKQMILEVVETDPGEKGNTAQGATKPAKVASGAMINVPLFITTGEKIRVDTDSKKYMERAKE 187
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BLAST of mRNA_S-ischiensis_contig11.2097.1 vs. uniprot
Match: A0A7S2UXP2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXP2_9STRA)

HSP 1 Score: 244 bits (624), Expect = 5.250e-74
Identity = 120/187 (64.17%), Postives = 151/187 (80.75%), Query Frame = 2 
Query:  230 LSMITTADFKNGLTIEIDGAPVKITEFLHVKPGKGSAFVRSKLKNLITGNTVEKTFRAGESMELAQVDRMDLQYTYADEDNFNFMDSVTYEEVSIARSVVGDTAGYMSEGMTVEALKWNGKVIDFSVPSTMTFTVAQTDPGVKGNTAQGGSKPATLETGAVISVPLFIAEGEKIRVDTVNKKYMSRA 790
            LSM+ T+DFKNGLTIE+DGAPVKI +FLHVKPGKGSAFVRSKLKNL+TGNT EKTFRAGES++ A V++ +LQ+TY  + N  FM+  T+EE  I  S+VGD   ++ EG TV  LKWN + ID  VP T+   V +TDPGVKGNTAQGGSKPA LE+GA ++VPLFI+EG++IRVDT+++KY+ +A
Sbjct:   42 LSMLDTSDFKNGLTIEVDGAPVKIIDFLHVKPGKGSAFVRSKLKNLLTGNTNEKTFRAGESVQEAIVEKAELQFTYEADPNMAFMNMNTFEEELIPISMVGDNVDWIMEGSTVNCLKWNDQWIDVEVPKTLNLKVVETDPGVKGNTAQGGSKPAKLESGATVNVPLFISEGDEIRVDTIDRKYLGKA 228
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BLAST of mRNA_S-ischiensis_contig11.2097.1 vs. uniprot
Match: A0A7R9UCL6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCL6_9STRA)

HSP 1 Score: 240 bits (612), Expect = 3.060e-72
Identity = 122/230 (53.04%), Postives = 165/230 (71.74%), Query Frame = 2 
Query:  113 SVLVTEAFMGPTRAYQGSFVARLSPQWVGATPARGLAAGLSMITTADFKNGLTIEIDGAPVKITEFLHVKPGKGSAFVRSKLKNLITGNTVEKTFRAGESMELAQVDRMDLQYTYADEDN--FNFMDSVTYEEVSIARSVVGDTAGYMSEGMTVEALKWNGKVIDFSVPSTMTFTVAQTDPGVKGNTAQGGSKPATLETGAVISVPLFIAEGEKIRVDTVNKKYMSRANE 796
            S+L+  A +G   A+  S   R +        +RG     SM +T+DFKNGLT+E+DG PVKI EF+HVKPGKG+AFVRSKLKNL+ G+ VEKT+RAGE +ELAQV++ D+Q+TY D+ +  + FMD  ++EEV+    V+G  A ++ +GM V  +KWN K+ID  +P TM + V +TDPGVKGNT QGG+KPATL+ GAV++VPLF+ +GE I+VDT   KY+SRA E
Sbjct:    6 SLLLLAATIGSVHAFLPSLPRRAA--------SRGSRLIPSMASTSDFKNGLTLEVDGTPVKIVEFMHVKPGKGAAFVRSKLKNLMNGSVVEKTWRAGEKVELAQVEKFDMQFTYFDDSSSSYMFMDVASFEEVACDADVLGSKASFLKDGMEVAGIKWNEKIIDVELPQTMVYEVVETDPGVKGNTVQGGTKPATLDGGAVVAVPLFVEQGEMIKVDTKEGKYLSRAAE 227
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BLAST of mRNA_S-ischiensis_contig11.2097.1 vs. uniprot
Match: A0A7J7IJD2_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IJD2_9RHOD)

HSP 1 Score: 233 bits (593), Expect = 5.950e-69
Identity = 113/183 (61.75%), Postives = 144/183 (78.69%), Query Frame = 2 
Query:  239 ITTADFKNGLTIEIDGAPVKITEFLHVKPGKGSAFVRSKLKNLITGNTVEKTFRAGESMELAQVDRMDLQYTYADEDNFNFMDSVTYEEVSIARSVVGDTAGYMSEGMTVEALKWNGKVIDFSVPSTMTFTVAQTDPGVKGNTAQGGSKPATLETGAVISVPLFIAEGEKIRVDTVNKKYMSR 787
            I++ DF+ GLTIE+DG+P K+ E LHVKPGKG+AFVR+KLKNL+TGN++E+TFRAGES+  AQV+++++QYTYA+E ++ FM+  T+EE  I  S VGDTA Y+  G  V   KWNGK I+  VP+TMT  V +TDPGV+GNTAQGGSKPA LETG VI VPLFI  GEK++VDT    Y+SR
Sbjct:   78 ISSNDFRVGLTIEVDGSPFKVIEHLHVKPGKGAAFVRTKLKNLLTGNSMERTFRAGESVPEAQVEKVEMQYTYAEESDYVFMNMTTFEEERIPASTVGDTAKYLRTGQDVSVTKWNGKPIEVEVPTTMTLEVVETDPGVRGNTAQGGSKPAKLETGVVIQVPLFINVGEKVKVDTRTGTYLSR 260
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BLAST of mRNA_S-ischiensis_contig11.2097.1 vs. uniprot
Match: A0A7R9YPI6_DIALT (Hypothetical protein n=3 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9YPI6_DIALT)

HSP 1 Score: 229 bits (583), Expect = 2.320e-68
Identity = 112/192 (58.33%), Postives = 145/192 (75.52%), Query Frame = 2 
Query:  224 AGLSMITTADFKNGLTIEIDGAPVKITEFLHVKPGKGSAFVRSKLKNLITGNTVEKTFRAGESMELAQVDRMDLQYTYADEDNFNFMDSVTYEEVSIARSVVGDTAGYMSEGMTVEALKWNGKVIDFSVPSTMTFTVAQTDPGVKGNTAQGGSKPATLETGAVISVPLFIAEGEKIRVDTVNKKYMSRANED 799
            A +SM+T+ DFK G+TIE D  P K+ EFLHVKPGKGSAFVRSKLKNLITGNT+EKT+RAGES+  A+V++ D+QYTY + D + FMD  ++EE+ I    + D   ++ E  + +  KWNG++I   +P+ M   V +T PGVKGNT QGG KPATLETGAVI VPLFI EGE++RVDT+ KKY+SRA ++
Sbjct:    8 AAVSMLTSNDFKVGMTIESDAVPYKVIEFLHVKPGKGSAFVRSKLKNLITGNTMEKTWRAGESVGAAEVEKFDVQYTYKEGDQYVFMDMASFEEMRIDAKAI-DQIDFLKESGSAQVAKWNGQIISVELPNQMNLKVIETMPGVKGNTVQGGQKPATLETGAVIQVPLFIEEGEEVRVDTIEKKYLSRAAKE 198
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BLAST of mRNA_S-ischiensis_contig11.2097.1 vs. uniprot
Match: A0A2P6VH08_9CHLO (Elongation factor P n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VH08_9CHLO)

HSP 1 Score: 228 bits (582), Expect = 6.500e-68
Identity = 117/182 (64.29%), Postives = 140/182 (76.92%), Query Frame = 2 
Query:  251 DFKNGLTIEIDGAPVKITEFLHVKPGKGSAFVRSKLKNLITGNTVEKTFRAGESMELAQVDRMDLQYTYADEDNFNFMDSVTYEEVSIARSVVGDTAGYMSEGMTVEALKWNGKVIDFSVPSTMTFTVAQTDPGVKGNTA-QGGSKPATLETGAVISVPLFIAEGEKIRVDTVNKKYMSRAN 793
            DFKNG+TIE+DGAP K+ EFLHVKPGKGSAFVRSKLKN ITGNTVEKT+RAGE ++LA V++ + Q+TYA+ D + FMD  +YEE  I +    D A Y+ EGM V  L WNGKVI   VP+T+   V +TDPGVKGNTA  GGSKPATLETGAVI VPLFI+ GE+I+VDT    Y+ RA+
Sbjct:   40 DFKNGMTIEMDGAPYKVVEFLHVKPGKGSAFVRSKLKNFITGNTVEKTWRAGEPVDLASVEKKETQFTYAEGDEYVFMDMQSYEETRITKDE--DWAKYLKEGMDVGVLLWNGKVISVEVPNTVELEVVETDPGVKGNTAGSGGSKPATLETGAVIQVPLFISTGERIKVDTRTDSYLQRAS 219
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BLAST of mRNA_S-ischiensis_contig11.2097.1 vs. uniprot
Match: A0A7V5I583_9BACT (Elongation factor P n=1 Tax=bacterium TaxID=1869227 RepID=A0A7V5I583_9BACT)

HSP 1 Score: 226 bits (577), Expect = 1.210e-67
Identity = 109/183 (59.56%), Postives = 139/183 (75.96%), Query Frame = 2 
Query:  239 ITTADFKNGLTIEIDGAPVKITEFLHVKPGKGSAFVRSKLKNLITGNTVEKTFRAGESMELAQVDRMDLQYTYADEDNFNFMDSVTYEEVSIARSVVGDTAGYMSEGMTVEALKWNGKVIDFSVPSTMTFTVAQTDPGVKGNTAQGGSKPATLETGAVISVPLFIAEGEKIRVDTVNKKYMSR 787
            + + DF+ GLTIE+DG+P K+ E LHVKPGKG+AFVR+KLKNL+TGNT+E+TFRAGE++  AQV++ + QYTY  E+ + FM+  T+EE  +   VVGDTA Y+  G  V   KWNGK I+  VP+T+T  V +TDPGV+GNTAQGGSKPA LETG V+ VPLFI  GEKI+VDT    Y+SR
Sbjct:    3 VNSNDFRVGLTIEVDGSPFKVIEHLHVKPGKGAAFVRTKLKNLLTGNTMERTFRAGETVPEAQVEKFEAQYTYPAENEYVFMNMATFEEEHVPNEVVGDTAKYLRVGQDVSVTKWNGKPIEVEVPATLTLEVVETDPGVRGNTAQGGSKPAKLETGVVVQVPLFIEVGEKIKVDTRTGSYLSR 185
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BLAST of mRNA_S-ischiensis_contig11.2097.1 vs. uniprot
Match: A0A2P6U5L0_CHLSO (Dihydroxy-acid dehydratase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U5L0_CHLSO)

HSP 1 Score: 243 bits (619), Expect = 4.820e-67
Identity = 132/225 (58.67%), Postives = 161/225 (71.56%), Query Frame = 2 
Query:  122 VTEAFMGPTRAYQGSF-VARLSPQWVGATPARGLAAGLSMITTADFKNGLTIEIDGAPVKITEFLHVKPGKGSAFVRSKLKNLITGNTVEKTFRAGESMELAQVDRMDLQYTYADEDNFNFMDSVTYEEVSIARSVVGDTAGYMSEGMTVEALKWNGKVIDFSVPSTMTFTVAQTDPGVKGNTAQGGSKPATLETGAVISVPLFIAEGEKIRVDTVNKKYMSRAN 793
            VT+A +    A Q SF VAR  PQ + A    GL    + +++ DFK G+TIE DGAP K+ EFLHVKPGKG+AFVRSKLKN IT NTVEKT+RAGE+++LA V++ + Q+TYA+ D + FMD  TYEE  + R    D A YM EGMTV  L WNGKVI    P+T+   V +TDPGVKGNTA GGSKPA LETGAVI VPLFI +GE+I+VDT +  Y+SRAN
Sbjct:  610 VTDAALSSKAAVQASFGVAR--PQRLSARRV-GLVVRAAQVSSNDFKTGMTIEFDGAPYKVVEFLHVKPGKGAAFVRSKLKNFITNNTVEKTWRAGETVDLANVEKKETQFTYAEGDEYVFMDMTTYEETRVPRDE--DWAKYMKEGMTVGVLLWNGKVISVEPPNTVELEVVETDPGVKGNTASGGSKPAKLETGAVIQVPLFIQQGERIKVDTRSDSYLSRAN 829
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2097.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CK22_9STRA1.100e-8368.98Elongation factor P (EF-P) KOW-like domain-contain... [more]
D7FX61_ECTSI6.720e-7859.92Elongation factor P n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5KN57_9PHAE3.110e-7666.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2UXP2_9STRA5.250e-7464.17Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7R9UCL6_9STRA3.060e-7253.04Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7J7IJD2_9RHOD5.950e-6961.75Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
A0A7R9YPI6_DIALT2.320e-6858.33Hypothetical protein n=3 Tax=Diacronema lutheri Ta... [more]
A0A2P6VH08_9CHLO6.500e-6864.29Elongation factor P n=1 Tax=Micractinium conductri... [more]
A0A7V5I583_9BACT1.210e-6759.56Elongation factor P n=1 Tax=bacterium TaxID=186922... [more]
A0A2P6U5L0_CHLSO4.820e-6758.67Dihydroxy-acid dehydratase n=1 Tax=Chlorella sorok... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:1172086..1177678 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score258.1
Seed ortholog evalue4.4e-66
Seed eggNOG ortholog2880.D7FX61
KEGG koko:K02356
EggNOG free text desc.Elongation factor P, C-terminal
EggNOG OGs2QSVF@2759,COG0231@1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionelongation factor P
Ec32 orthologEc-10_004410.1
Exons7
Model size1741
Cds size765
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815597.3303127-UTR-S-ischiensis_contig11:1172085..11730241622815597.3303127-UTR-S-ischiensis_contig11:1172085..1173024Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 1172086..1173024 -
1695739793.585948-UTR-S-ischiensis_contig11:1172085..11730241695739793.585948-UTR-S-ischiensis_contig11:1172085..1173024Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 1172086..1173024 -
1622815597.4383268-UTR-S-ischiensis_contig11:1177641..11776781622815597.4383268-UTR-S-ischiensis_contig11:1177641..1177678Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 1177642..1177678 -
1695739793.6752834-UTR-S-ischiensis_contig11:1177641..11776781695739793.6752834-UTR-S-ischiensis_contig11:1177641..1177678Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 1177642..1177678 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815597.3448932-CDS-S-ischiensis_contig11:1173024..11732551622815597.3448932-CDS-S-ischiensis_contig11:1173024..1173255Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1173025..1173255 -
1695739793.5980814-CDS-S-ischiensis_contig11:1173024..11732551695739793.5980814-CDS-S-ischiensis_contig11:1173024..1173255Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1173025..1173255 -
1622815597.3585799-CDS-S-ischiensis_contig11:1173819..11738851622815597.3585799-CDS-S-ischiensis_contig11:1173819..1173885Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1173820..1173885 -
1695739793.6086004-CDS-S-ischiensis_contig11:1173819..11738851695739793.6086004-CDS-S-ischiensis_contig11:1173819..1173885Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1173820..1173885 -
1622815597.3692214-CDS-S-ischiensis_contig11:1175340..11754421622815597.3692214-CDS-S-ischiensis_contig11:1175340..1175442Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1175341..1175442 -
1695739793.6227698-CDS-S-ischiensis_contig11:1175340..11754421695739793.6227698-CDS-S-ischiensis_contig11:1175340..1175442Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1175341..1175442 -
1622815597.37874-CDS-S-ischiensis_contig11:1175770..11758891622815597.37874-CDS-S-ischiensis_contig11:1175770..1175889Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1175771..1175889 -
1695739793.636637-CDS-S-ischiensis_contig11:1175770..11758891695739793.636637-CDS-S-ischiensis_contig11:1175770..1175889Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1175771..1175889 -
1622815597.3916104-CDS-S-ischiensis_contig11:1176688..11768121622815597.3916104-CDS-S-ischiensis_contig11:1176688..1176812Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1176689..1176812 -
1695739793.6470098-CDS-S-ischiensis_contig11:1176688..11768121695739793.6470098-CDS-S-ischiensis_contig11:1176688..1176812Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1176689..1176812 -
1622815597.4085157-CDS-S-ischiensis_contig11:1177373..11774231622815597.4085157-CDS-S-ischiensis_contig11:1177373..1177423Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1177374..1177423 -
1695739793.6565146-CDS-S-ischiensis_contig11:1177373..11774231695739793.6565146-CDS-S-ischiensis_contig11:1177373..1177423Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1177374..1177423 -
1622815597.4233556-CDS-S-ischiensis_contig11:1177568..11776411622815597.4233556-CDS-S-ischiensis_contig11:1177568..1177641Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1177569..1177641 -
1695739793.6658168-CDS-S-ischiensis_contig11:1177568..11776411695739793.6658168-CDS-S-ischiensis_contig11:1177568..1177641Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1177569..1177641 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2097.1prot_S-ischiensis_contig11.2097.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 1173025..1177641 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2097.1

>prot_S-ischiensis_contig11.2097.1 ID=prot_S-ischiensis_contig11.2097.1|Name=mRNA_S-ischiensis_contig11.2097.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=255bp
MVQTLSLFVRTNMLPRLVASVVALGSVLVTEAFMGPTRAYQGSFVARLSP
QWVGATPARGLAAGLSMITTADFKNGLTIEIDGAPVKITEFLHVKPGKGS
AFVRSKLKNLITGNTVEKTFRAGESMELAQVDRMDLQYTYADEDNFNFMD
SVTYEEVSIARSVVGDTAGYMSEGMTVEALKWNGKVIDFSVPSTMTFTVA
QTDPGVKGNTAQGGSKPATLETGAVISVPLFIAEGEKIRVDTVNKKYMSR
ANED*
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mRNA from alignment at S-ischiensis_contig11:1172086..1177678-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2097.1 ID=mRNA_S-ischiensis_contig11.2097.1|Name=mRNA_S-ischiensis_contig11.2097.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=5593bp|location=Sequence derived from alignment at S-ischiensis_contig11:1172086..1177678- (Schizocladia ischiensis KU_0333)
AGCTGCAGCTGCTCCGCCCGGGTGACTACACCAACCGATGGTACAAACCC
TGTCCCTGTTCGTACGGACAAATATGTTGCCAAGACTAGTCGCCTCGGTG
GTGGCCCTGGGTGAGCCGACCGCGCTCCGAGATCGAGGCTGTGCGTGCCG
CAGAAATGTTCATGAACGGACGGCGAGACAGCGCCGCTCCCCAAACCTGA
CACCCCGCTGCCCTCAATCCTTGTCCCTGTGAAAATATGCGGCGGTCCGT
GGCAGGCTCCGTGCTGGTGACCGAGGCCTTCATGGGCCCGACCCGCGCGT
ACCAGGTGCATATTTGTCCTCGCGCATCGCTCGGTAGAGATCTACTGCAC
TAGCACTGTACAAGGCTCGTAGAGCTCTACTCCAGCATGAGCTTCACTGC
CACGGTAGGATTGTTTTTCATCAGTGCGGGTCATGCACACCCACCAGCCT
GGATCCCCGTGTTTGTCTGTGAGTTTTCAAGCTCGGCCGATGGTGCATGC
TGCGGCCAGGCTGCTGTGCCCTCCAGCAATCGGCAATGGGCACGCGGAGC
CCAACCCACCCGCCGCCTTCCCCCTGTTTTGCGCACACGAAGGCAAAAAT
CCACGTGGCTCGTCTCCATGTGAAGGTGCTGAAAAATGCTCACTTACGCC
CGCCCGTCCACAGCAATGCATAGCGTACGTGATGCGTGCACCTGGCAACA
AGGCAACTGGAGCCGTTCACACGAAACACACTGTGCTCTACCCTACCAGC
CTTACTTTTGATGACATGAGGCCGTACACGAGCTTGTTACGAGCGCCGAC
GTTTCCTCCCCCTGACACCTAATGGGACTGATCTCCCAAAACCAATTTCC
CTCTCGGCGACGGCAGGGATCGTTCGTCGCCCGCCTTTCGCCGCAATGGG
TCGGCGCCACGCCAGCAAGGGGGTTGGCAGCAGGGCTGTCCATGATTACC
ACAGCAGACTTCAAGAACGGGCTCACCATAGAGATTGACGGTGGGTGCAG
TGTCCCCTCCCGTTGCGGCCGTGTGTCCCAGGACTGCTAGCTTAGTGCTG
GCTGGCCAGTGGGTGGGTGGTCCAGGGTTGACCATTATTTACCACTCATG
TGCACCCGCCACCTCAGGCACCCTCTGTGCATCGCGCCATCCAACAAGTC
TGCAATTCGAAGCACTTTTTTCGTGGAAGATGGTATAATGAGATGACTGG
TGCCCCACAAGTGTGCACTCACGTTGGACAGGGGACGCCCCGCCTCTGCA
TGTCAGCGACCGTCGGCCCAGTATTCCACTTGCTGGACTTTGATGTGATG
ACGTGATGTGATGTGATGTGATGTCAAACTACTGTACATTAGAGTACACA
TTGCATCACATCACATCACATCCCAGTATACTCCTTGCTGGACCGCCGGC
CAGCAATACCCCCGCAGGGTAGCCTTTCGGCCATTGGCCTCGCGCCCCTA
TTTCGCCGGGACGTGGCATGTACTGTGTATACTGCGCCTGGCTCGGGTTT
ACCGGGCGTTGTCAGCTAGTGCATGTGCGATACATAACGGCATTCCTCCA
CGTCACTAAGGACCTCAACAGTGGCCCTTCCTTATAGCTCACCAGGGGAA
GTTTGTATGGGGAAGGGGAGGAAAAGAGAAGGGGGAGGCAGGGCGTAGGT
AAAGAGGGCTCCATTTCCCGGGCGGCGAGTTTGTCGGAGCGGTGCCGGGT
CGCATCAGGTCCTCATCAGGGGCGGCCCTGCCACTCCACTCCAGTCCACC
CCATCCCCGCCGCATCCTCCTACCCCCTCTCCCACCCAGGGGCCCCGGTG
AAGATAACGGAATTCCTCCACGTCAAGCCCGGCAAGGGCTCCGCTTTTGT
GCGCTCCAAGCTCAAGAACCTCATCACGGGGAACACGGTCGAGAAGACCT
TCAGGGCGGTGAGTCGGCTAAGTTAGCACGTGGAAGGTGTTTGGGGGCTG
TAAACGATGGAGATTTTGGCGGGGGATGAGTGCATCATCGTTGACTCCCC
CGAGGGTAGGTGAGGTGCTCATGTCAAGGGGAACATCTTCGGTTTTACTT
GGTTTTGGGGGTGCCAACGGCGACGTGTTGCATGCGTGCGTGCGTGCTCG
CGGTGGGTCTGACCCTGACATACATAGTTTGTTCTCGCTTCTCTGCAGGA
GTTCACCCCTTGGGAGCGTCGGCACCAAACGGCGAAACGCTGTGTGTGCG
CGCGTGTTTTTCCTTTTGGCCCGTCTGTCTGCGCAGGGGGAGTCCATGGA
GCTGGCACAGGTAGACCGCATGGACTTGCAATACACATACGCAGACGAAG
ACAACTTCAACTTCATGGACTCTGTGACCTACGAGGAGGTGAGGCGACTC
CCCGGAGCTGTGGGGCCTGCATTAACCCTTTCGCCCCTGCTAAATTGGAC
TTACACACTACAGCCCTATGAATATTCGGACCCCAGGGGTAAAAGGGTTA
GCCTGGGTAGCCTCGGGGGACTTTGTCGGCTGTGACGGCGTGCTACTACT
AGTAGTGAAGTGCGGCAGGTTGGTGGGGAGTTGAAATTTGGTACGCCGTA
GAAGTTAACCCTCGGGAATAGTTGGCTGTGGTGGTATGCTACGTATACTG
TGCTATAGTAGCTGTGAGGATGTACAGCGATGGACCGGTGTATACTGCTT
GGAAGCGTGTACTCGCGTTGTACCTACTCTGTTGCAGTAGTGCTTGCCGT
AGTCCCGAGACCATTGACGGGATCGGTGCACAGCGCCTATGCAGCACTGT
AAATTGCCTTCATTCCAGTACTTACAGTATATAGCTCCTCTGAGGGTTTT
TGTCGCAACGCCTTAGAGGACTGCGGCACACCAGTAAGGATACGCCGGGA
TGCAGCACAGGATAACAATATATGTATACTTCGAAGTACTACGTAGTATG
TACAGTACTCACGTTGTGCTTGCCGTAGTCCCGAGACCATTGACCACGCG
CCGATGACGACGGGGCGATCTCCCTGCCGCCCTTTGACAGGATTACAGAG
TGCTGTAGGTGCTTACCTTCTAAGTACGCGAGTAGTTTGAGTGCTTGATT
TATGAAGCCTCACTTCACTCAGCTCACCAATGTACTGTATGTGCTGCTGG
TATCGACTAGTATACTGTAGTGTGTGGCATCCTCAACAGGAGGCACTTCA
AGTACGAAGTACTTGCTCCAGACCTGTGTCTGGTGAAAGGTAGCCTGAGC
TTCTGAGGGTGCGTGCGTTGCTGGCCACGGCGAGAGTCCGCTAATGCGCG
TCGCGCCCTGGTTATACATCGTCAGACCTGCAAACGGCCGGGCAATCTCC
GCCAGGATTCGACATGCTCGAGCATTGTTGTTTTCTTGTGTATACGTGGT
CCCTCTGTCCCACCCAAGCTTCCCAGGCACGGGAGGGAGATTGCTCCGCT
GTCAATGGCGTGTGGTCGATGGTGTCGGGACTACGGCAAGCATAACGGGA
GTAACTCAAGTACTTCGAAGTACATGTACTGTGCATACGCCACATCACGT
CACGTTGCATCACGTCGCATCACCGACCATTGCCACCCCCCTCATCACGG
CAGGTCTCCGCCCCGCGGTCTGAAGAATGCATATCAATCGCATGGATCAC
ATGACGTGCGGTCATCCGGAACCCTTTTACCGCTGAGGTCCGTATAGTCA
TAGGGTGCTTAATGTGTAAGTCCAATTTAGCAGGGCTAAAAGGTTTAACC
CCCCGCGGCCCGGAAGGTGTCCATCAATCCCACGCCTGTATATGACGTCA
CGCAACATATGCACTGTCGTGACTGAACCCTCTCGGGCTGCAGGTGTCCA
TTGCGCGGTCTGTGGTGGGGGACACGGCGGGCTACATGTCAGAAGGCATG
ACTGTGGAGGTGAGCCCCTCTGTCGTGACGAACGACCTTCATATACTGTA
ATACTGACATGACTGTGGAGGTGAGCCCCTCTGTCGTGACAAGCCACCGT
CATGTACTGTACCACACTCGAGTGTCCTGTCCTGTCCTGTCCTGTAGTGT
ACTGTAGTATGTCAGAGGGCATGACTGTGGAGGTGAGCCCCTCTGTCGTG
ACAAGCCACCGTCATGTACTGTACTGCCGCACTCGAGTGCCCTGTAGAGT
ACGGTGCTGCTTTGTACTGTAGTTGGAGTTACGTTTGGTACGTGTACGTT
GTGTACTTACTTTGCCGAATTGCTTCCAAGTCAGCAGTATACTGTACCTA
CACACAAGTACGAGCACACTCAGTACAGAACTTACATGCAGTACGCGTGT
TTTATATCACAGTACTGCACTTCCAAGTACACACACAATGGTACACATGC
CCACCGGCAACACCCCCCTTCCTCCACTCCTCCTACCCTGCCCCTCCCCC
CCCTCCCCCCCTCCTCTCCTTCCTCCTCCTCCTCCTCCACCGCTATCTCT
GCCCTCGGCGCGGCCTTCCCCAGGCGTTGAAATGGAACGGCAAAGTGATC
GACTTCTCTGTGCCTTCGACCATGACGTTCACGGTGGCCCAGACCGACCC
GGGCGTCAAAGGGAACACGGCGCAGGGGGGCTCCAAGCCCGCCACTTTGG
AGACGGGCGCGGTGATTAGCGTCCCGCTCTTCATTGCGGAGGGGGAGAAG
ATCAGGGTGGACACGGTCAACAAGAAGTACATGTCGCGGGCCAATGAGGA
TTAACCGTTGGAATGCGGCCGATGGCTTTATAAGAGCGGAGGTTCAAGCT
TCCCAGTCTTGCCGTGGCCCTCATGTACCCTACCATGGTTTGTTGTTGAG
TTCACGACAGTCTGCTAAAGCCACCCAAATAGCTTAGTAAGTGCTTCCAA
GTACATTGTGCATCCTCGTGCGCTCATTTCGGCCCAGCCCAAAGCAGCCG
GCACGTCGTCCCCACGATCCCCAGACGAGTCCGGGGCGCCCGTAAGGAAC
TCGGCATGTCCGAGTCGGACAGGTCCGGTACCGGTACAACCAATTGCCCG
GCGAACCTTTCCAACGGTGCGTTTCCCAGCCTGAGGGCGGGGAACTGTTC
CGGTACTGGAACTTCGAAGTACAGCCCATCACCTGGCGAACCTGGCCAGC
AACGTGTCTCCAAGTGCTTCTGTTGAAGGAGTACTCTACTTGGTGCTTGT
CGCCCACTGGCAAAGGAGTTCTTCTAACCAGAGGACGATGACTACAACTG
CTGTACATACCTACGCCGGGCCTGTGCTACTGTCCATGCCTTGACAGAGT
TTTCACGCGGTGATCGTTGCCACGAGGTACAATCGCACGTGGACAGACCT
GTGTGTCAAATTGAGTGCTCTCGTTGCCTTGCACAGTATAGAGCTCTACT
GTACTATCGTTCGATAGTGAAATATACCTACCGTGACTTCCGGAAGTCTC
CTATCGCCGTCATCTATGTACTCGAGCAAGGGGGTATTTACCAGCCAGGA
CGCCCAAGCTGGGTGTGCACTCCGAGTCAGTCTGCAGCCTGAGGGGCTTG
GACCGGCGCTGGCAGAGGCCCAGCGCGGGCCTGTGCCGTGGAGACAAGTG
CTCGAGTTGAAGGCCTTTTTGTACAGGTCTCACATTTGAGGAACTACTCG
GAATCGCCGAGTTCGGCATTGGAAGACAAAGCTAAGAATTGCA
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:1172086..1177678-

>mRNA_S-ischiensis_contig11.2097.1 ID=mRNA_S-ischiensis_contig11.2097.1|Name=mRNA_S-ischiensis_contig11.2097.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1530bp|location=Sequence derived from alignment at S-ischiensis_contig11:1172086..1177678- (Schizocladia ischiensis KU_0333)
ATGGTACAAACCCTGTCCCTGTTCGTACGGACAAATATGTTGCCAAGACT
AGTCGCCTCGGTGGTGGCCCTGGATGGTACAAACCCTGTCCCTGTTCGTA
CGGACAAATATGTTGCCAAGACTAGTCGCCTCGGTGGTGGCCCTGGGCTC
CGTGCTGGTGACCGAGGCCTTCATGGGCCCGACCCGCGCGTACCAGGCTC
CGTGCTGGTGACCGAGGCCTTCATGGGCCCGACCCGCGCGTACCAGGGAT
CGTTCGTCGCCCGCCTTTCGCCGCAATGGGTCGGCGCCACGCCAGCAAGG
GGGTTGGCAGCAGGGCTGTCCATGATTACCACAGCAGACTTCAAGAACGG
GCTCACCATAGAGATTGACGGGATCGTTCGTCGCCCGCCTTTCGCCGCAA
TGGGTCGGCGCCACGCCAGCAAGGGGGTTGGCAGCAGGGCTGTCCATGAT
TACCACAGCAGACTTCAAGAACGGGCTCACCATAGAGATTGACGGGGCCC
CGGTGAAGATAACGGAATTCCTCCACGTCAAGCCCGGCAAGGGCTCCGCT
TTTGTGCGCTCCAAGCTCAAGAACCTCATCACGGGGAACACGGTCGAGAA
GACCTTCAGGGCGGGGCCCCGGTGAAGATAACGGAATTCCTCCACGTCAA
GCCCGGCAAGGGCTCCGCTTTTGTGCGCTCCAAGCTCAAGAACCTCATCA
CGGGGAACACGGTCGAGAAGACCTTCAGGGCGGGGGAGTCCATGGAGCTG
GCACAGGTAGACCGCATGGACTTGCAATACACATACGCAGACGAAGACAA
CTTCAACTTCATGGACTCTGTGACCTACGAGGAGGGGGAGTCCATGGAGC
TGGCACAGGTAGACCGCATGGACTTGCAATACACATACGCAGACGAAGAC
AACTTCAACTTCATGGACTCTGTGACCTACGAGGAGGTGTCCATTGCGCG
GTCTGTGGTGGGGGACACGGCGGGCTACATGTCAGAAGGCATGACTGTGG
AGGTGTCCATTGCGCGGTCTGTGGTGGGGGACACGGCGGGCTACATGTCA
GAAGGCATGACTGTGGAGGCGTTGAAATGGAACGGCAAAGTGATCGACTT
CTCTGTGCCTTCGACCATGACGTTCACGGTGGCCCAGACCGACCCGGGCG
TCAAAGGGAACACGGCGCAGGGGGGCTCCAAGCCCGCCACTTTGGAGACG
GGCGCGGTGATTAGCGTCCCGCTCTTCATTGCGGAGGGGGAGAAGATCAG
GGTGGACACGGTCAACAAGAAGTACATGTCGCGGGCCAATGAGGATTAAG
CGTTGAAATGGAACGGCAAAGTGATCGACTTCTCTGTGCCTTCGACCATG
ACGTTCACGGTGGCCCAGACCGACCCGGGCGTCAAAGGGAACACGGCGCA
GGGGGGCTCCAAGCCCGCCACTTTGGAGACGGGCGCGGTGATTAGCGTCC
CGCTCTTCATTGCGGAGGGGGAGAAGATCAGGGTGGACACGGTCAACAAG
AAGTACATGTCGCGGGCCAATGAGGATTAA
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