mRNA_S-ischiensis_contig11.2091.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2091.1
Unique NamemRNA_S-ischiensis_contig11.2091.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2091.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:1099539..1101097 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size286
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815577.328837-CDS-S-ischiensis_contig11:1099538..10997841622815577.328837-CDS-S-ischiensis_contig11:1099538..1099784Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1099539..1099784 -
1695739781.3866513-CDS-S-ischiensis_contig11:1099538..10997841695739781.3866513-CDS-S-ischiensis_contig11:1099538..1099784Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1099539..1099784 -
1622815577.3386493-CDS-S-ischiensis_contig11:1101058..11010971622815577.3386493-CDS-S-ischiensis_contig11:1101058..1101097Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1101059..1101097 -
1695739781.3947933-CDS-S-ischiensis_contig11:1101058..11010971695739781.3947933-CDS-S-ischiensis_contig11:1101058..1101097Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1101059..1101097 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2091.1prot_S-ischiensis_contig11.2091.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 1099539..1101097 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2091.1

>prot_S-ischiensis_contig11.2091.1 ID=prot_S-ischiensis_contig11.2091.1|Name=mRNA_S-ischiensis_contig11.2091.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=95bp
RRAQPGSALYALQEALQALPSAPSPPATAATAGRSPGHEPATVPSPGTHV
HLLDSVRLCLFGTEGDSGTGGIATQVAQAAQDPRAATAAAAATTG
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mRNA from alignment at S-ischiensis_contig11:1099539..1101097-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2091.1 ID=mRNA_S-ischiensis_contig11.2091.1|Name=mRNA_S-ischiensis_contig11.2091.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1559bp|location=Sequence derived from alignment at S-ischiensis_contig11:1099539..1101097- (Schizocladia ischiensis KU_0333)
CGGCGGGCACAGCCGGGGTCTGCTCTCTACGCTCTTCAGGTGGGAGCCGA
GGGCATCCCTCTGTGGGTGTGTGTGTGTGTGTGCTGTCTGTGACTTGGTG
GCTCTTGCACCTTGTTGTGTGCAGGGTGAGTTAGATCCCCATATTCTGCC
AGTGTGGAGTGCAATAGCTGCAGCTTTGGGGCGGCCGCGGGCTGGGAGCC
GAGGGCGAGACAGAGGCTGTGCTCTAGTGCAACGACATGGTTGCACACCA
TTGACGAGTATATGTGCAGTACTGCTCCTTAGCAATGCGCTCGTCTAGGC
GAGTGGTCTACCGACGGCTTTAGCGAGCCCAAGGTCGCGAGTTCGATTCC
CTGTGTGGAGTCGATTTTCCGCGAAAAATGGAGGCGGGCGTAGGGGGCGC
CGCCCCGCAGGCAGTAGCTGCCCGGGCCCGTGGCCGAGGAGACGGACCGG
CGGCCCCTTCCGCGGGGCCTCCTGAGGTGCTTTGCCCCGGGCCCCGGCTC
TGGGGCGGGGCACGGGCGGCGGCTGCAGCCCCTCACGGCCGGCCCGGTCT
GGGGCGGCTGGGATCCGCACTGCGCGTCCGCTGCGTCCCGGCCTCGCAGT
ACTTCCAACCACCCTAGTGTGGCTAGGTCGTTTTGGACCTATTGATCAAT
CTATATGATACTTGCACAGCTAAACCAGACTGATCATTGCATCGGGCAAT
GATAAAACAAAAAATGGACCCCTCCCGAAACACGCGCAAAGTTGAAAAAA
TCATGAGAGCTGTACTGGCTTGTCGGCCTCGGGCCCAATGGCAAAGTCGG
GATCGGCGGGAGCCTGTCCGGTGAAAAACCGGAATGCTCCGGCCCGACGT
AGTAGGGCCGCGTGGCCAATGGCCGTAAGGCTAACCCCGTATGGGGGCCG
ACCCCGGGCCAGCACAGTATACTGGCTCGAGTCGGTGGCAAGCACAGGAT
GGGATCCTCATCCGCCATGAGTACACACTACTCCTTAGGGGTCAACGGGA
CACGGATGTGTTGTGTACTTTAGGGGACTGTAAGCTTAGCGTCACATCAC
ATCACATGTCTTGGCCGAGGCGCCTTGCCAATGGTCTTGGGACCACGGCA
ATCACAGGCCAAGCCAGCGGGAGTGCATAGTACAGTACTCATACGTATAG
AGTACTTTATAGTACTTAGAAGTACTATAGTAGTAGTAGTAGTTTGTACT
TCCGGAAACAATGTACTTTGTGCAAGTACAGCACTATAGTACATAGCACG
TGTCTTGCACTCAACTCTTTTTTCCCCACCACCCGCCCCCGCCTCCCCCC
CGACCTCGGACAGGAGGCCTTGCAGGCGTTGCCCTCGGCCCCCTCCCCTC
CCGCCACTGCCGCCACCGCGGGCCGCTCGCCTGGCCACGAGCCCGCGACC
GTGCCCTCACCCGGTACCCACGTGCACCTCCTTGACTCTGTGCGGCTGTG
CCTCTTCGGGACGGAGGGTGACAGCGGCACAGGTGGCATAGCAACCCAAG
TCGCGCAAGCGGCCCAAGACCCCCGTGCCGCCACCGCCGCCGCCGCCGCC
ACCACCGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:1099539..1101097-

>mRNA_S-ischiensis_contig11.2091.1 ID=mRNA_S-ischiensis_contig11.2091.1|Name=mRNA_S-ischiensis_contig11.2091.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=570bp|location=Sequence derived from alignment at S-ischiensis_contig11:1099539..1101097- (Schizocladia ischiensis KU_0333)
CGGCGGGCACAGCCGGGGTCTGCTCTCTACGCTCTTCAGCGGCGGGCACA
GCCGGGGTCTGCTCTCTACGCTCTTCAGGAGGCCTTGCAGGCGTTGCCCT
CGGCCCCCTCCCCTCCCGCCACTGCCGCCACCGCGGGCCGCTCGCCTGGC
CACGAGCCCGCGACCGTGCCCTCACCCGGTACCCACGTGCACCTCCTTGA
CTCTGTGCGGCTGTGCCTCTTCGGGACGGAGGGTGACAGCGGCACAGGTG
GCATAGCAACCCAAGTCGCGCAAGCGGCCCAAGACCCCCGTGCCGCCACC
GCCGCCGCCGCCGCCACCACCGGCGAGGCCTTGCAGGCGTTGCCCTCGGC
CCCCTCCCCTCCCGCCACTGCCGCCACCGCGGGCCGCTCGCCTGGCCACG
AGCCCGCGACCGTGCCCTCACCCGGTACCCACGTGCACCTCCTTGACTCT
GTGCGGCTGTGCCTCTTCGGGACGGAGGGTGACAGCGGCACAGGTGGCAT
AGCAACCCAAGTCGCGCAAGCGGCCCAAGACCCCCGTGCCGCCACCGCCG
CCGCCGCCGCCACCACCGGC
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