mRNA_S-ischiensis_contig11.2082.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2082.1
Unique NamemRNA_S-ischiensis_contig11.2082.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2082.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:1038051..1040352 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size182
Cds size180
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815577.2856557-CDS-S-ischiensis_contig11:1038050..10380861622815577.2856557-CDS-S-ischiensis_contig11:1038050..1038086Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1038051..1038086 +
1695739781.3634782-CDS-S-ischiensis_contig11:1038050..10380861695739781.3634782-CDS-S-ischiensis_contig11:1038050..1038086Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1038051..1038086 +
1622815577.298365-CDS-S-ischiensis_contig11:1040206..10403501622815577.298365-CDS-S-ischiensis_contig11:1040206..1040350Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1040207..1040350 +
1695739781.3754888-CDS-S-ischiensis_contig11:1040206..10403501695739781.3754888-CDS-S-ischiensis_contig11:1040206..1040350Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1040207..1040350 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2082.1prot_S-ischiensis_contig11.2082.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 1038051..1040350 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2082.1

>prot_S-ischiensis_contig11.2082.1 ID=prot_S-ischiensis_contig11.2082.1|Name=mRNA_S-ischiensis_contig11.2082.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=60bp
RGREIQLLAHLKERYRGGGGAGPRVSTGSAGTSAKPLRPAPRSFIGAPGY
DSRDAGVGEE
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mRNA from alignment at S-ischiensis_contig11:1038051..1040352+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2082.1 ID=mRNA_S-ischiensis_contig11.2082.1|Name=mRNA_S-ischiensis_contig11.2082.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2302bp|location=Sequence derived from alignment at S-ischiensis_contig11:1038051..1040352+ (Schizocladia ischiensis KU_0333)
CGGGGGAGGGAGATCCAGCTGCTGGCGCACCTCAAGGTCAACGTCTCTAC
AGTGAAATAGGGTTGACTACTCTTAAGTTTATCTACTATGCACAAAGTTC
CCCTGGCGAGCTATAAGGAAGGGCCACTGCTGAGGTCTATAATGACGTGG
CCTGTACCTCGCCCTGTGTTGTTCCTGTTAATACTATATGTACTGTGTAG
GTGCGATGCCTGTCCACCGGACGATGAGACAGCGCGCCACGTTATGCTTG
ATTGCCCTCAATACAATTCCACCAGGTCTGCTCTTCACGCCACCCTATCC
GCAGCTCTCCCAGTAGACAGTTGTCGTGGATATTGTGCCTCAACCCCTAC
TGTACTGGCATTAGCCCCTTGGACCTATGTATCAGGTGAGAACTTCGATT
GACCAGTGGAGAAACAGAGTGCTGTCGAGTCTGCAGTGAAAGAGGTTCTT
GTTCCTGTGTGGCGTTCGTGGTTGGGACGAGTAGATGGTGACCTTGGATC
CCCCCCCCGCCATTGCCACGTCTGCAGTGAAAGAGGTTCTTGTTCCTGTG
TGGCGTTCGTGGTTGGGACGAGTAGATGGTGACCTTGGATCCCCCCCCCG
CCATTGCCACGGCTCCAAACATGTAGAGCTCATGAATGCTTGCCGTACTC
CCGAGACCATTGACCCTGCACCTTGATCGAGACGGAGCAGGCCTCCTCCC
TCCCCTGGGCACTTTCGGAGATCATGCGGAGTTGGACGAGGAAATCGCAC
GAGAAGTATAGCCTTATTCCACGGCAATGGTGTTTTATTGTAATTTGGGC
GTCGTGGATCAATCCCGCGCAACCTCGAGGTGTAATTGGGACTCAATTGT
ATTCATTTGGGCTCCCGGAGGTTTGGCCCGTTCATTTAACCCTTTCACCC
ATGGGGTCCATATAATCACAGGGTTTTAGTGTGCAAGTCCAATTTACCAG
GGGTAAAAGGGTTAAGCCTATGTCTGAACCGTTGCCGGTCCAATACACTA
TCGATGGCACTGTTAAATTATCGAGGCTGGCTACCTAAATCAAGTCAACG
GCAATGGCTGCTTGCATGCTTGGATCGCCTTCCGAGCAAGCTTAGACCTT
GCGGACGCTGTTCCGGGGCCCCATAAGTAGTTGCCTGTAAATCCCTTGGA
GGCTGACCCAAACGCTTTGCAGCTCTCGGCAGGGCAGTGGGCAGGTCTGC
CCGGGCCGGCCTTGTCGTACTGAGTTTAATATGGGCACAGTAGAACTTGG
TGCTACGCGACGACGATTTCAGGCGCGATTGACGGACGCAATTCGTAGTG
GATGACCGCACAAACTATCTCAACCCCCCTATTTCGACCACGCCGCGTTC
ATCGCCTTACCACCCGGCGGCCTATCTCGGTCTCCTTCACTGGTTTGCTG
TCCAAAAAGCAGTGAAGGAGACCGAGACCGACGTCGGTTACCGCCTCGAT
CGTAGCTCATGCTGCGAGGAGCACACACCCAGATTTTCGTGCAATTTGGT
TGCCGCGCGAATTGCGTCCGTGAATCGACCTCCGGTTGATCTCGGGAAGC
GCCCCTGGCAGAGCCAGGGTGGGAGGAGGCGGCACCAGGGGCGGAGGGGT
GGCCATTTCAATACCCCCCCCCATCCCTGACTCGCGAGAGTCAGGGTGGG
GGGGGGGGGGCTCCCTGCTACTTAGGCCTAGGCCCAGCCGGGGGGGGGTC
CCCCACCATGACGTAAGTATGCTTCCAAAAGTGTATTTCGAAGTAGAACT
CTGTAAATCGAACGGGAATGTCCATCCTGTGAAGCTCCCTAAGTAGCACA
ATCGAGGAACACGCCGAGCTCCCTAAGTAGCACAATCGAAGAACACGGCG
TGCTGCGCAGTACATGTCCTACTCCGAGTTCTTGAAATCTTTTTTCAAGC
ACTGTACGGAGTACTTCGTAAGTACTTCGAAGTACACGCGTGTCATCGCC
AAGTGTGTGTCCACAGAAGCACTTTCGAAAGTACTTTCAAGCACCCCTTG
AAACAACACGTAACTTAGCCTACTACTCAAATACTTCATAACTTACACAA
AAGTTCCAAACACCACCACCACCACCATCGCCACCACCCCCCCCCCCCAC
CCATCACCACCGCCGCTGCCGCCGTTGACTGTGCCTAAAAACTTGCCCGC
ACGCAGGAGCGATACCGTGGGGGGGGCGGTGCGGGCCCGCGGGTTAGCAC
CGGCTCGGCCGGCACAAGCGCCAAGCCTCTTAGGCCTGCCCCGCGCTCCT
TCATCGGGGCGCCCGGTTACGACTCACGGGACGCCGGCGTTGGGGAGGAG
GG
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:1038051..1040352+

>mRNA_S-ischiensis_contig11.2082.1 ID=mRNA_S-ischiensis_contig11.2082.1|Name=mRNA_S-ischiensis_contig11.2082.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=360bp|location=Sequence derived from alignment at S-ischiensis_contig11:1038051..1040352+ (Schizocladia ischiensis KU_0333)
CGGGGGAGGGAGATCCAGCTGCTGGCGCACCTCAAGCGGGGGAGGGAGAT
CCAGCTGCTGGCGCACCTCAAGGAGCGATACCGTGGGGGGGGCGGTGCGG
GCCCGCGGGTTAGCACCGGCTCGGCCGGCACAAGCGCCAAGCCTCTTAGG
CCTGCCCCGCGCTCCTTCATCGGGGCGCCCGGTTACGACTCACGGGACGC
CGGCGTTGGGGAGGAGGAGCGATACCGTGGGGGGGGCGGTGCGGGCCCGC
GGGTTAGCACCGGCTCGGCCGGCACAAGCGCCAAGCCTCTTAGGCCTGCC
CCGCGCTCCTTCATCGGGGCGCCCGGTTACGACTCACGGGACGCCGGCGT
TGGGGAGGAG
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