mRNA_S-ischiensis_contig11.2071.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2071.1
Unique NamemRNA_S-ischiensis_contig11.2071.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig11.2071.1 vs. uniprot
Match: D7FWI8_ECTSI (Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7FWI8_ECTSI)

HSP 1 Score: 202 bits (514), Expect = 2.680e-65
Identity = 107/116 (92.24%), Postives = 112/116 (96.55%), Query Frame = 1 
Query:   25 MAKTPSKKSAKAPKKAGDKKKKGKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVALEAGKLTRYSKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 372
            MAKTPSKKSAKAPKKAGDKK+  KRTESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVA E+GKLTRY+KK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKAGDKKRTNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
[Close]
BLAST of mRNA_S-ischiensis_contig11.2071.1 vs. uniprot
Match: A0A6U0X3U9_9STRA (Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A6U0X3U9_9STRA)

HSP 1 Score: 202 bits (513), Expect = 6.200e-65
Identity = 106/118 (89.83%), Postives = 114/118 (96.61%), Query Frame = 1 
Query:   19 NTMAKTPSKKSAKAPKKAGDKKKKGKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVALEAGKLTRYSKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 372
            +TMAKTPSKKSAKAPKKAGDK KKGKRTESY SYIYKVLKQVHP+TGISK+GMSIMNSFIND+FER+A EAG+L RYSKK+TLSSREIQT+VRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   13 STMAKTPSKKSAKAPKKAGDKVKKGKRTESYSSYIYKVLKQVHPETGISKKGMSIMNSFINDIFERLAGEAGRLARYSKKATLSSREIQTSVRLMLPGELAKHAVSEGTKAVTKFTSS 130
[Close]
BLAST of mRNA_S-ischiensis_contig11.2071.1 vs. uniprot
Match: A0A836CJ22_9STRA (Histone H2B n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ22_9STRA)

HSP 1 Score: 201 bits (510), Expect = 1.170e-64
Identity = 109/117 (93.16%), Postives = 112/117 (95.73%), Query Frame = 1 
Query:   25 MAKTPSKKSAKAPKKAGD-KKKKGKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVALEAGKLTRYSKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 372
            MAK PSKK+AKAPKKA D KKKK KRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A EAGKLTRY+KKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 117
[Close]
BLAST of mRNA_S-ischiensis_contig11.2071.1 vs. uniprot
Match: A0A836CJT3_9STRA (Histone H2B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJT3_9STRA)

HSP 1 Score: 202 bits (515), Expect = 1.430e-63
Identity = 110/118 (93.22%), Postives = 113/118 (95.76%), Query Frame = 1 
Query:   22 TMAKTPSKKSAKAPKKAGD-KKKKGKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVALEAGKLTRYSKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 372
            TMAK PSKK+AKAPKKA D KKKK KRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A EAGKLTRY+KKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:  133 TMAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 250
[Close]
BLAST of mRNA_S-ischiensis_contig11.2071.1 vs. uniprot
Match: A0A485K2U0_9STRA (Histone H2B n=29 Tax=Stramenopiles TaxID=33634 RepID=A0A485K2U0_9STRA)

HSP 1 Score: 190 bits (482), Expect = 2.230e-60
Identity = 103/118 (87.29%), Postives = 110/118 (93.22%), Query Frame = 1 
Query:   25 MAKTPSKKSAKAPKKAGDKKK--KGKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVALEAGKLTRYSKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 372
            MAKTPSKKSAKAPKK G+K K  K KR ESY +YIYKVLKQVHP+TGISKRGMSIMNSFIND+FER+A EAGKL+RY+KKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKTGEKGKNRKVKRIESYSTYIYKVLKQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 118
[Close]
BLAST of mRNA_S-ischiensis_contig11.2071.1 vs. uniprot
Match: W7TEP7_9STRA (Histone h2b n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7TEP7_9STRA)

HSP 1 Score: 186 bits (472), Expect = 7.000e-59
Identity = 99/116 (85.34%), Postives = 106/116 (91.38%), Query Frame = 1 
Query:   25 MAKTPSKKSAKAPKKAGDKKKKGKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVALEAGKLTRYSKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 372
            MAKTPSKKSAKAPKKAG   KK  R ESYGSYIYKVLKQVHPDTGISKRG+SI+NSFI D+F+R+A EAGKL RY+KKSTLSSREIQTAVRL LPGELAKHAVSEGTKAVTK+TSS
Sbjct:    1 MAKTPSKKSAKAPKKAGKGTKKKTRVESYGSYIYKVLKQVHPDTGISKRGVSILNSFIGDIFDRLATEAGKLARYTKKSTLSSREIQTAVRLTLPGELAKHAVSEGTKAVTKYTSS 116
[Close]
BLAST of mRNA_S-ischiensis_contig11.2071.1 vs. uniprot
Match: B7FWR8_PHATC (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B7FWR8_PHATC)

HSP 1 Score: 185 bits (470), Expect = 1.370e-58
Identity = 98/116 (84.48%), Postives = 106/116 (91.38%), Query Frame = 1 
Query:   25 MAKTPSKKSAKAPKKAGDKKKKGKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVALEAGKLTRYSKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 372
            MAKTPSK+SAKAPKKA    K  KRTE+Y SYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A EAGKL  Y+KK+TLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKF+SS
Sbjct:    1 MAKTPSKQSAKAPKKAATGTKSKKRTETYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIATEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSS 116
[Close]
BLAST of mRNA_S-ischiensis_contig11.2071.1 vs. uniprot
Match: H2B_OLILU (Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=83000 RepID=H2B_OLILU)

HSP 1 Score: 184 bits (467), Expect = 3.680e-58
Identity = 98/116 (84.48%), Postives = 107/116 (92.24%), Query Frame = 1 
Query:   25 MAKTPSKKSAKAPKKAGDKKKKGKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVALEAGKLTRYSKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 372
            MAKTPSKK+AKAPKKAG K+   KR E+Y SYIYKVLKQVHPDTGISKRGMSIMNSFIND+FER+A EA +L RY+K+STLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTS+
Sbjct:    1 MAKTPSKKAAKAPKKAGSKR--NKRVETYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDIFERLAGEASRLARYNKRSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSN 114
[Close]
BLAST of mRNA_S-ischiensis_contig11.2071.1 vs. uniprot
Match: A0A6U6DWX5_9STRA (Histone H2B n=4 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6DWX5_9STRA)

HSP 1 Score: 184 bits (466), Expect = 6.530e-58
Identity = 100/119 (84.03%), Postives = 111/119 (93.28%), Query Frame = 1 
Query:   16 INTMAKTPSKKSAKAPKKAGDKKKKGKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVALEAGKLTRYSKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 372
            I TMAKTPSKK+A APKKAG K+ + KRTESY SYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A EAGKL+ Y+KK+TLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:    5 IVTMAKTPSKKAA-APKKAGGKRSR-KRTESYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIASEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 121
[Close]
BLAST of mRNA_S-ischiensis_contig11.2071.1 vs. uniprot
Match: F0Y1N7_AURAN (Histone H2B n=6 Tax=Pelagomonadales TaxID=54409 RepID=F0Y1N7_AURAN)

HSP 1 Score: 180 bits (456), Expect = 2.110e-56
Identity = 98/120 (81.67%), Postives = 107/120 (89.17%), Query Frame = 1 
Query:   25 MAKTPSKKSAKAPKKAGDKKKKGKRTESYGSYIYKVLKQVHPDTGISKRG----MSIMNSFINDVFERVALEAGKLTRYSKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 372
            MAKTPSKKSAKAPKKA   KKK  R ESY +YIY+VLKQVHPDTGISK+G    MSIMNSFIND+FER+ALEA KL R+SKK+TLSSREIQTAVRLMLPGEL+KHAVSEGTKAVTKF+SS
Sbjct:    1 MAKTPSKKSAKAPKKAAGGKKKKTRVESYSTYIYRVLKQVHPDTGISKKGAHPRMSIMNSFINDIFERIALEASKLCRFSKKATLSSREIQTAVRLMLPGELSKHAVSEGTKAVTKFSSS 120
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2071.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWI8_ECTSI2.680e-6592.24Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
A0A6U0X3U9_9STRA6.200e-6589.83Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 R... [more]
A0A836CJ22_9STRA1.170e-6493.16Histone H2B n=2 Tax=Tribonema minus TaxID=303371 R... [more]
A0A836CJT3_9STRA1.430e-6393.22Histone H2B n=1 Tax=Tribonema minus TaxID=303371 R... [more]
A0A485K2U0_9STRA2.230e-6087.29Histone H2B n=29 Tax=Stramenopiles TaxID=33634 Rep... [more]
W7TEP7_9STRA7.000e-5985.34Histone h2b n=4 Tax=Monodopsidaceae TaxID=425072 R... [more]
B7FWR8_PHATC1.370e-5884.48Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re... [more]
H2B_OLILU3.680e-5884.48Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=830... [more]
A0A6U6DWX5_9STRA6.530e-5884.03Histone H2B n=4 Tax=Odontella aurita TaxID=265563 ... [more]
F0Y1N7_AURAN2.110e-5681.67Histone H2B n=6 Tax=Pelagomonadales TaxID=54409 Re... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:901185..901781 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score203.4
Seed ortholog evalue5.9e-50
Seed eggNOG ortholog2880.D7FWI8
KEGG koko:K11252
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006325,GO:0006333,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0031298,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0070013,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsKOG1744@1,KOG1744@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size375
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2071.1prot_S-ischiensis_contig11.2071.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 901185..901757 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815594.1103208-CDS-S-ischiensis_contig11:901184..9014541622815594.1103208-CDS-S-ischiensis_contig11:901184..901454Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 901185..901454 -
1695739791.6013372-CDS-S-ischiensis_contig11:901184..9014541695739791.6013372-CDS-S-ischiensis_contig11:901184..901454Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 901185..901454 -
1622815594.120687-CDS-S-ischiensis_contig11:901676..9017571622815594.120687-CDS-S-ischiensis_contig11:901676..901757Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 901677..901757 -
1695739791.612592-CDS-S-ischiensis_contig11:901676..9017571695739791.612592-CDS-S-ischiensis_contig11:901676..901757Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 901677..901757 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815594.1312475-UTR-S-ischiensis_contig11:901757..9017811622815594.1312475-UTR-S-ischiensis_contig11:901757..901781Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 901758..901781 -
1695739791.6206417-UTR-S-ischiensis_contig11:901757..9017811695739791.6206417-UTR-S-ischiensis_contig11:901757..901781Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 901758..901781 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2071.1

>prot_S-ischiensis_contig11.2071.1 ID=prot_S-ischiensis_contig11.2071.1|Name=mRNA_S-ischiensis_contig11.2071.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=117bp
MAKTPSKKSAKAPKKAGDKKKKGKRTESYGSYIYKVLKQVHPDTGISKRG
MSIMNSFINDVFERVALEAGKLTRYSKKSTLSSREIQTAVRLMLPGELAK
HAVSEGTKAVTKFTSS*
back to top

mRNA from alignment at S-ischiensis_contig11:901185..901781-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2071.1 ID=mRNA_S-ischiensis_contig11.2071.1|Name=mRNA_S-ischiensis_contig11.2071.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=597bp|location=Sequence derived from alignment at S-ischiensis_contig11:901185..901781- (Schizocladia ischiensis KU_0333)
CTCGACTCGAAAGACATCAACACAATGGCCAAGACACCCTCCAAGAAGTC
TGCCAAGGCCCCGAAGAAGGCCGGCGACAAGAAGAAGAAGGGCAAGCGCA
CCGAGGTGGGCATTCCACGGAGACCTAGCATGAGTTGGAGGCCGCCCGTT
AGGGACAGTTTTTTGAAATGGCTGGCAGCTGCAGCGCCCGATGCACTTGC
CGGGAGCGTCCATGCCCGTGTCCGCGTGTTGCAGAGCTTGCGGTGCGCTG
CATTTCTTGTGTCCCCTCGAAACCACCTGCGGTTGTGCCTGACGATCTTC
CGTCGTCTGTTGTCTGTGCTGGTGCAGAGCTATGGCAGCTACATCTACAA
GGTGCTCAAGCAGGTGCACCCCGACACTGGTATCTCCAAGCGCGGCATGT
CCATCATGAACAGCTTCATCAACGACGTGTTCGAGCGCGTGGCCCTGGAG
GCCGGCAAGCTGACCCGCTACAGCAAGAAGTCCACCCTGTCCTCCAGGGA
GATCCAGACGGCTGTGCGCCTCATGCTGCCGGGCGAGCTGGCCAAGCACG
CCGTGTCCGAGGGCACCAAGGCCGTCACCAAGTTCACCTCGTCCTAA
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig11:901185..901781-

>mRNA_S-ischiensis_contig11.2071.1 ID=mRNA_S-ischiensis_contig11.2071.1|Name=mRNA_S-ischiensis_contig11.2071.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=702bp|location=Sequence derived from alignment at S-ischiensis_contig11:901185..901781- (Schizocladia ischiensis KU_0333)
ATGGCCAAGACACCCTCCAAGAAGTCTGCCAAGGCCCCGAAGAAGGCCGG
CGACAAGAAGAAGAAGGGCAAGCGCACCGAGATGGCCAAGACACCCTCCA
AGAAGTCTGCCAAGGCCCCGAAGAAGGCCGGCGACAAGAAGAAGAAGGGC
AAGCGCACCGAGAGCTATGGCAGCTACATCTACAAGGTGCTCAAGCAGGT
GCACCCCGACACTGGTATCTCCAAGCGCGGCATGTCCATCATGAACAGCT
TCATCAACGACGTGTTCGAGCGCGTGGCCCTGGAGGCCGGCAAGCTGACC
CGCTACAGCAAGAAGTCCACCCTGTCCTCCAGGGAGATCCAGACGGCTGT
GCGCCTCATGCTGCCGGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCA
CCAAGGCCGTCACCAAGTTCACCTCGTCCTAAAGCTATGGCAGCTACATC
TACAAGGTGCTCAAGCAGGTGCACCCCGACACTGGTATCTCCAAGCGCGG
CATGTCCATCATGAACAGCTTCATCAACGACGTGTTCGAGCGCGTGGCCC
TGGAGGCCGGCAAGCTGACCCGCTACAGCAAGAAGTCCACCCTGTCCTCC
AGGGAGATCCAGACGGCTGTGCGCCTCATGCTGCCGGGCGAGCTGGCCAA
GCACGCCGTGTCCGAGGGCACCAAGGCCGTCACCAAGTTCACCTCGTCCT
AA
back to top