mRNA_S-ischiensis_contig11.2065.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2065.1
Unique NamemRNA_S-ischiensis_contig11.2065.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig11.2065.1 vs. uniprot
Match: D8LRM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM7_ECTSI)

HSP 1 Score: 323 bits (829), Expect = 1.120e-103
Identity = 148/224 (66.07%), Postives = 177/224 (79.02%), Query Frame = 1 
Query:    1 RCHDTATGALLWEIPNAHRARVTCVAVHMDSKLAYMVSASEDGCVRVWALRTRELMLQFVEHQKGVRGLVVDVANPGLVHSVGEDCTIFTYDLRKEKRTVAHMARSGAFQSLTQRLDSEQELVTCDSNGRLLVWDCDYRDPVQALQDPSCERLRCISVSPSGRYLALAGDDKTVKVLDIKDGFAPVANGRAHSEPITSLSWVSDERQLVSAGEDCAICVWNFYG 672
            RC+D ATGAL W IP AHRA VTC AV  DS  +++V+ +EDG V VW+LRTREL+L+F EHQKGV  ++VDVA+P LVHS G DCT+ TYDLRKEKRTVAHM R GAFQ +TQR+DSE EL+TCD +GRLL WDCDY  PVQA+QDPS +RL C+SVSPSGRY+AL GDD+ VKVLD+      VA GRAH+  ITS+ W  DERQL+SA EDC + +WNF+G
Sbjct:  126 RCYDAATGALRWAIPKAHRAAVTCCAVRFDSSASFLVTGAEDGSVSVWSLRTRELLLRFSEHQKGVTTVLVDVASPNLVHSAGTDCTVLTYDLRKEKRTVAHMTRGGAFQGMTQRIDSENELITCDIHGRLLTWDCDYPAPVQAMQDPSKQRLSCVSVSPSGRYMALGGDDELVKVLDLATNCETVACGRAHAGAITSVQWTRDERQLISAAEDCTLAIWNFFG 349
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BLAST of mRNA_S-ischiensis_contig11.2065.1 vs. uniprot
Match: A0A7S2FKB8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FKB8_9STRA)

HSP 1 Score: 311 bits (797), Expect = 9.880e-98
Identity = 144/224 (64.29%), Postives = 170/224 (75.89%), Query Frame = 1 
Query:    1 RCHDTATGALLWEIPNAHRARVTCVAVHMDSKLAYMVSASEDGCVRVWALRTRELMLQFVEHQKGVRGLVVDVANPGLVHSVGEDCTIFTYDLRKEKRTVAHMARSGAFQSLTQRLDSEQELVTCDSNGRLLVWDCDYRDPVQALQDPSCERLRCISVSPSGRYLALAGDDKTVKVLDIKDGFAPVANGRAHSEPITSLSWVSDERQLVSAGEDCAICVWNFYG 672
            RCHD +T   LWEIPNAHR  VT VA H D+ L+Y++S  EDG VR+WALR+RELMLQFVEH+KGV  ++VDV +P LVHS G DC++FTYDLRKE+R VAHM R GAF  LTQRLDSEQELVTCD NGRLL WDCD  DPVQ LQ P    +RC+SVSP+GRYLA+ GD   V V D++ G   +A G  HSEP+  L W  DE+Q++S G+DC ICVWNFYG
Sbjct:  223 RCHDASTMQALWEIPNAHRGAVTTVATHSDASLSYVLSGGEDGSVRIWALRSRELMLQFVEHKKGVSQVLVDVKSPNLVHSAGLDCSVFTYDLRKERRCVAHMVREGAFTGLTQRLDSEQELVTCDMNGRLLFWDCDVPDPVQVLQSPQRMTMRCVSVSPTGRYLAICGDF-LVNVFDLRGGVQLMAQGLGHSEPVRDLYWSPDEKQVISVGDDCCICVWNFYG 445
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BLAST of mRNA_S-ischiensis_contig11.2065.1 vs. uniprot
Match: A0A7S2BHX7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BHX7_9STRA)

HSP 1 Score: 311 bits (797), Expect = 1.640e-94
Identity = 144/224 (64.29%), Postives = 170/224 (75.89%), Query Frame = 1 
Query:    1 RCHDTATGALLWEIPNAHRARVTCVAVHMDSKLAYMVSASEDGCVRVWALRTRELMLQFVEHQKGVRGLVVDVANPGLVHSVGEDCTIFTYDLRKEKRTVAHMARSGAFQSLTQRLDSEQELVTCDSNGRLLVWDCDYRDPVQALQDPSCERLRCISVSPSGRYLALAGDDKTVKVLDIKDGFAPVANGRAHSEPITSLSWVSDERQLVSAGEDCAICVWNFYG 672
            RCHD +T   LWEIPNAHR  VT VA H D+ L+Y++S  EDG VR+WALR+RELMLQFVEH+KGV  ++VDV +P LVHS G DC++FTYDLRKE+R VAHM R GAF  LTQRLDSEQELVTCD NGRLL WDCD  DPVQ LQ P    +RC+SVSP+GRYLA+ GD   V V D++ G   +A G  HSEP+  L W  DE+Q++S G+DC ICVWNFYG
Sbjct:  502 RCHDASTMQALWEIPNAHRGAVTTVATHSDASLSYVLSGGEDGSVRIWALRSRELMLQFVEHKKGVSQVLVDVKSPNLVHSAGLDCSVFTYDLRKERRCVAHMVREGAFTGLTQRLDSEQELVTCDMNGRLLFWDCDVPDPVQVLQSPQRMTMRCVSVSPTGRYLAICGDF-LVNVFDLRGGVQLMAQGLGHSEPVRDLYWSPDEKQVISVGDDCCICVWNFYG 724
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BLAST of mRNA_S-ischiensis_contig11.2065.1 vs. uniprot
Match: A0A7S2UWQ1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWQ1_9STRA)

HSP 1 Score: 291 bits (746), Expect = 1.280e-87
Identity = 129/227 (56.83%), Postives = 173/227 (76.21%), Query Frame = 1 
Query:    1 RCHDT-ATGALLWEIPNAHRARVTCVAVHMDSKLAYMVSASEDGCVRVWALRTRELMLQFVEHQKGVRGLVVDVANPGLVHSVGEDCTIFTYDLRKEKRTVAHMARSGAFQSLTQRLDSEQELVTCDSNGRLLVWDCDYRDPVQALQDPSCERLRCISVSPSGRYLALAGDDKTVKVLDIKDGFAPVANGRAHSEPITSLSWVSDERQLVSAGEDCAICVWNFYGPA 678
            RC++  A GA+ W IPNAHRA +T +AVH D +L Y+V+ ++DG VR+W LR+RE++LQF EHQKGV  ++VDV  P LVHS G DC + TYD++KE+RTVAHM R GAF  L+QR+DSEQELVTCD+ GR+  WDCD + P QALQDPS +R+R +SVSPSG ++A+ G+D  VKVLD+      +A GR HS P++ + W  DE+Q++S G+DC +C+WNFYGP+
Sbjct:  440 RCYNVEAQGAMEWHIPNAHRAAITSLAVHHDERLGYIVTGAKDGAVRLWNLRSREMLLQFTEHQKGVSKVIVDVRLPKLVHSAGLDCAVLTYDIQKERRTVAHMVREGAFLGLSQRVDSEQELVTCDAAGRIFFWDCDVQGPTQALQDPSRDRIRAVSVSPSGHFMAIGGEDHLVKVLDLTADGDILAVGRGHSAPVSDVFWSPDEKQIISIGDDCCVCIWNFYGPS 666
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BLAST of mRNA_S-ischiensis_contig11.2065.1 vs. uniprot
Match: A0A7S2SRF7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SRF7_9STRA)

HSP 1 Score: 288 bits (738), Expect = 3.030e-86
Identity = 131/227 (57.71%), Postives = 165/227 (72.69%), Query Frame = 1 
Query:    1 RCHDTATGALLWEIPNAHRARVTCVAVHMDSKLAYMVSASEDGCVRVWALRTRELMLQFVEHQKGVRGLVVDVANPGLVHSVGEDCTIFTYDLRKEKRTVAHMARSGAFQSLTQRLDSEQELVTCDSNGRLLVWDCDYRDPVQALQDPSCERLRCISVSPSGRYLALAGDDKTVKVLDIKDGFAPVANGRAHSEPITSLSWVSDERQLVSAGEDCAICVWNFYGPAD 681
            RCHD AT   LW +PNAHR  VT VA H D+ L+Y+VS  EDG VRVW+LR+REL+LQF EH+K V  ++VDV +P L+HS   DC + TYD+++E+RTVAHM R GAF  LTQRLDSEQEL+TCD NGRLL WDCD  +PVQALQ PS  +++  S+SP+GR+LA+ GD   V V D+  G   +     HSEP+ S+ W  DE+Q+VS GEDC +C+WNFYG  D
Sbjct:  453 RCHDAATMQQLWHLPNAHRGPVTAVATHSDASLSYLVSGGEDGAVRVWSLRSRELLLQFTEHKKPVTRVLVDVKSPHLIHSSSLDCQLLTYDVKRERRTVAHMTREGAFTGLTQRLDSEQELITCDMNGRLLFWDCDVANPVQALQSPSRMKMKFASMSPTGRFLAVCGDF-LVNVFDLTRGIQLIVQAHGHSEPVASVEWSPDEKQIVSVGEDCCVCIWNFYGVLD 678
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BLAST of mRNA_S-ischiensis_contig11.2065.1 vs. uniprot
Match: F0YE13_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YE13_AURAN)

HSP 1 Score: 263 bits (671), Expect = 1.320e-77
Identity = 127/231 (54.98%), Postives = 158/231 (68.40%), Query Frame = 1 
Query:    1 RCHDTATGALLWEIPNAHRARVTCVAVHMDSKLAYMVSASEDGCVRVWALRTRELMLQFVEHQKGVRGLVVDVANPGLVHSVGEDCTIFTYDLRKEKRTVAHMARSGAFQSLTQRLDSEQELVTCDSNGRLLVWDCDYRDPVQALQDPSCERLRCISVSPSGRYLALAGDDK-TVKVLDIKDGFA---PVANGRAHSEPITSLSWVSDERQLVSAGEDCAICVWNFYGPAD 681
            RC   A GAL W IP AHR  V+ +A H++ KLAY+V+ SEDG VRVW L TRE+M+QF EH KGV GLVVD A+P L HS G DC +FT+DLR EKRTV+HM R GAF  L+QR DSE+EL+TCD+NGR+L WDCD  +P+  +       + C++VSPSGRY  L  D+  T+  LD     A   P+A G AHS  +T + W  DERQLVS G D  IC+WNF+G +D
Sbjct:  338 RCFSAADGALEWAIPTAHRRPVSAIACHVEQKLAYLVTGSEDGSVRVWNLSTREVMMQFAEHHKGVTGLVVDAADPRLFHSGGLDCAVFTHDLRSEKRTVSHMMREGAFTGLSQRKDSERELITCDANGRVLFWDCDVPEPILGVSVDGTT-VACVAVSPSGRYFVLCRDEMLTIFELDANSATAHPKPIAEGWAHSANVTKVQWSPDERQLVSIGADSCICIWNFFGTSD 567
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BLAST of mRNA_S-ischiensis_contig11.2065.1 vs. uniprot
Match: A0A835ZHC1_9STRA (Quinon protein alcohol dehydrogenase-like superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHC1_9STRA)

HSP 1 Score: 256 bits (655), Expect = 5.680e-74
Identity = 127/235 (54.04%), Postives = 160/235 (68.09%), Query Frame = 1 
Query:    4 CHDTATGALLWEIPNAHRARVTCVAVHMDSKLAYMVSASEDGCVRVWALRTRELMLQFVEHQKGVRGLVVDVANPGLVHSVGEDCTIFTYDLRKEKRTVAHMARSGAFQSLTQRLDSEQELVTCDSNGRLLVWDCDYRDPVQALQDPSCE-----------RLRCISVSPSGRYLALAGDDKTVKVLDIKDG-FAPVANGRAHSEPITSLSWVSDERQLVSAGEDCAICVWNFYG 672
            C+D A+GA LW I  AHR  VT VAV +D+ +AY+++ SEDG VRVW+LRTR LM QF EH++GV  + VDVA P  VHS G D T FTYDLRKE+R   H  R G F SLTQR DSE EL+T D+ G +L WDCD RDPV A +                R+RC++VSPSGR+LA +GDD  VKV+D+ D  +  VA G  HS+ + +L+W  DE+Q++S G DC+ICVWNFYG
Sbjct:  470 CYDAASGAELWAIATAHRGAVTAVAVQLDAAVAYLLTGSEDGEVRVWSLRTRALMAQFAEHKRGVSAVAVDVALPHRVHSAGLDGTTFTYDLRKEQRVGTHAIRGGGFLSLTQRRDSEHELITGDALGDVLAWDCDARDPVMAARSXXXXXXXXXXXXAPPRVRCVAVSPSGRFLAASGDDGVVKVMDLGDEHWRVVACGHGHSDGVAALAWSCDEKQIISGGVDCSICVWNFYG 704
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BLAST of mRNA_S-ischiensis_contig11.2065.1 vs. uniprot
Match: A0A7S3ZQS9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZQS9_9STRA)

HSP 1 Score: 249 bits (635), Expect = 5.060e-71
Identity = 121/227 (53.30%), Postives = 160/227 (70.48%), Query Frame = 1 
Query:    1 RCHDTATGALLWEIPNAHRARVTCVAVHMDSKLAYMVSASEDGCVRVWALRTRELMLQFVEHQKGVRGLVVDVANPGLVHSVGEDCTIFTYDLRKEKRTVAHMARSGAFQSLTQRLDSEQELVTCDSNGRLLVWDCDYRDPVQALQDPSCERLRCISVSPSGRYLALAGDDK-TVKVLDIKDGFAP--VANGRAHSEPITSLSWVSDERQLVSAGEDCAICVWNFYG 672
            RC ++ +G L W IP AHR  V+ +   +++KLAY+V+ S DG VRVW L TRE+M+QF EH KGV GL++D  NP L HS G DC  FT+D+ KEKRTV HM R GAF  LTQR+DSEQELVTCD++GR+L WDCD  +PV ++ + + + + C++VSPSG+Y AL  D+  TV  L++     P  +A+G AHS  ++S+ W  DERQLVS G D  ICVWNF+G
Sbjct:  476 RCFNSGSGDLEWTIPTAHRKPVSAITCWVETKLAYLVTGSLDGSVRVWNLSTREMMMQFAEHLKGVTGLLIDAINPHLFHSAGSDCAAFTHDISKEKRTVGHMMREGAFTGLTQRIDSEQELVTCDASGRVLFWDCDAPEPVLSI-NINGQSVTCVAVSPSGKYFALCRDEMVTVFELNVLATAPPKCIADGWAHSAVVSSVQWSPDERQLVSIGIDSCICVWNFFG 701
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BLAST of mRNA_S-ischiensis_contig11.2065.1 vs. uniprot
Match: A0A2D4C8U2_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C8U2_PYTIN)

HSP 1 Score: 232 bits (591), Expect = 1.180e-64
Identity = 118/223 (52.91%), Postives = 145/223 (65.02%), Query Frame = 1 
Query:    1 RCHDTATGALLWEIPNAHRARVTCVAVHMDSKLAYMVSASEDGCVRVWALRTRELMLQFVEHQKGVRGLVVDVANPGLVHSVGEDCTIFTYDLRKEKRTVAHMARSGAFQSLTQRLDSEQELVTCDSNGRLLVWDCDYRDPVQALQDPSCERLRCISVSPSGRYLALAGDDKTVKVLDIKDGFAPVANGRAHSEPITSLSWVSDERQLVSAGEDCAICVWNFY 669
            R  D AT    W I NAHR  VT VA    +   Y+VS S DG V VW+++TREL+LQF EH++GV  ++VDV  P  VHS G D  +F YDL+ E+R VA   R GAF  +TQRLDSE E+VT  ++GRLL WDCD  DPV AL DPS  R+  + VSPSGR+LA  G+D TVKV D++   A VA    HSE +  ++W  DERQLVS G D  +CVWN Y
Sbjct:  496 RAFDAATAQRKWHIANAHRGHVTTVA----TSALYIVSGSSDGAVNVWSVQTRELVLQFHEHKRGVTQVLVDVGKPHWVHSCGLDKALFIYDLKTERRVVAQQTRDGAFHGITQRLDSETEIVTAGADGRLLFWDCDVVDPVAALVDPSHLRVAALRVSPSGRFLATGGEDCTVKVYDLRT-MALVAVAAGHSETVNCVAWSPDERQLVSVGSDSCVCVWNVY 713
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BLAST of mRNA_S-ischiensis_contig11.2065.1 vs. uniprot
Match: A0A662YFZ8_9STRA (Cilia- and flagella-associated protein 52 n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YFZ8_9STRA)

HSP 1 Score: 229 bits (583), Expect = 2.280e-64
Identity = 113/223 (50.67%), Postives = 143/223 (64.13%), Query Frame = 1 
Query:    1 RCHDTATGALLWEIPNAHRARVTCVAVHMDSKLAYMVSASEDGCVRVWALRTRELMLQFVEHQKGVRGLVVDVANPGLVHSVGEDCTIFTYDLRKEKRTVAHMARSGAFQSLTQRLDSEQELVTCDSNGRLLVWDCDYRDPVQALQDPSCERLRCISVSPSGRYLALAGDDKTVKVLDIKDGFAPVANGRAHSEPITSLSWVSDERQLVSAGEDCAICVWNFY 669
            R +D AT    W I  AHR  VT VA        Y+VS + DG V +W+  TREL+LQF EH++ V G++VDV  P  VHS G+D  +F YDL+  +R VA   R GAF  +TQRLDSE E+VT  ++GRLL WDCD  +PVQ L DPS  ++ C  VSPSGR+LA  G+D  VK+ D+      +A GR HS+ + +L+W  DERQLVS G D  ICVWNFY
Sbjct:  389 RAYDAATAQPKWHIATAHRGEVTAVACSAQ----YVVSGASDGGVSIWSFATRELVLQFHEHKRAVTGVLVDVCKPHFVHSCGQDKALFIYDLKGARRVVAQQVREGAFHGITQRLDSETEIVTAGADGRLLFWDCDEPEPVQYLLDPSRLKISCARVSPSGRFLATCGEDCEVKLFDLSSSTL-LATGRGHSQTVNALTWSPDERQLVSVGCDSCICVWNFY 606
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2065.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRM7_ECTSI1.120e-10366.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2FKB8_9STRA9.880e-9864.29Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2BHX7_9STRA1.640e-9464.29Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2UWQ1_9STRA1.280e-8756.83Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2SRF7_9STRA3.030e-8657.71Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
F0YE13_AURAN1.320e-7754.98Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A835ZHC1_9STRA5.680e-7454.04Quinon protein alcohol dehydrogenase-like superfam... [more]
A0A7S3ZQS9_9STRA5.060e-7153.30Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A2D4C8U2_PYTIN1.180e-6452.91Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A662YFZ8_9STRA2.280e-6450.67Cilia- and flagella-associated protein 52 n=2 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:847626..852426 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score281.6
Seed ortholog evalue3.3e-73
Seed eggNOG ortholog2880.D8LRM7
EggNOG free text desc.WD repeat-containing protein
EggNOG OGsKOG0266@1,KOG0266@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size1506
Cds size684
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815593.6359563-UTR-S-ischiensis_contig11:847625..8483631622815593.6359563-UTR-S-ischiensis_contig11:847625..848363Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 847626..848363 -
1695739791.3187003-UTR-S-ischiensis_contig11:847625..8483631695739791.3187003-UTR-S-ischiensis_contig11:847625..848363Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 847626..848363 -
1622815593.7308059-UTR-S-ischiensis_contig11:852342..8524261622815593.7308059-UTR-S-ischiensis_contig11:852342..852426Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 852343..852426 -
1695739791.3789907-UTR-S-ischiensis_contig11:852342..8524261695739791.3789907-UTR-S-ischiensis_contig11:852342..852426Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 852343..852426 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815593.649524-CDS-S-ischiensis_contig11:848363..8486061622815593.649524-CDS-S-ischiensis_contig11:848363..848606Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 848364..848606 -
1695739791.330389-CDS-S-ischiensis_contig11:848363..8486061695739791.330389-CDS-S-ischiensis_contig11:848363..848606Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 848364..848606 -
1622815593.6660397-CDS-S-ischiensis_contig11:849764..8498601622815593.6660397-CDS-S-ischiensis_contig11:849764..849860Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 849765..849860 -
1695739791.3403494-CDS-S-ischiensis_contig11:849764..8498601695739791.3403494-CDS-S-ischiensis_contig11:849764..849860Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 849765..849860 -
1622815593.6874502-CDS-S-ischiensis_contig11:850627..8507481622815593.6874502-CDS-S-ischiensis_contig11:850627..850748Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 850628..850748 -
1695739791.3501184-CDS-S-ischiensis_contig11:850627..8507481695739791.3501184-CDS-S-ischiensis_contig11:850627..850748Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 850628..850748 -
1622815593.7006097-CDS-S-ischiensis_contig11:851487..8516371622815593.7006097-CDS-S-ischiensis_contig11:851487..851637Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 851488..851637 -
1695739791.362717-CDS-S-ischiensis_contig11:851487..8516371695739791.362717-CDS-S-ischiensis_contig11:851487..851637Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 851488..851637 -
1622815593.716256-CDS-S-ischiensis_contig11:852268..8523421622815593.716256-CDS-S-ischiensis_contig11:852268..852342Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 852269..852342 -
1695739791.371159-CDS-S-ischiensis_contig11:852268..8523421695739791.371159-CDS-S-ischiensis_contig11:852268..852342Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 852269..852342 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2065.1prot_S-ischiensis_contig11.2065.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 848364..852342 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2065.1

>prot_S-ischiensis_contig11.2065.1 ID=prot_S-ischiensis_contig11.2065.1|Name=mRNA_S-ischiensis_contig11.2065.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=228bp
MDSKLAYMVSASEDGCVRVWALRTRELMLQFVEHQKGVRGLVVDVANPGL
VHSVGEDCTIFTYDLRKEKRTVAHMARSGAFQSLTQRLDSEQELVTCDSN
GRLLVWDCDYRDPVQALQDPSCERLRCISVSPSGRYLALAGDDKTVKVLD
IKDGFAPVANGRAHSEPITSLSWVSDERQLVSAGEDCAICVWNFYGPADG
PADGPADGGGAVGPGPTGTGLNSEPGA*
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mRNA from alignment at S-ischiensis_contig11:847626..852426-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2065.1 ID=mRNA_S-ischiensis_contig11.2065.1|Name=mRNA_S-ischiensis_contig11.2065.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4801bp|location=Sequence derived from alignment at S-ischiensis_contig11:847626..852426- (Schizocladia ischiensis KU_0333)
AGGTGCCACGACACCGCCACCGGCGCCCTTCTGTGGGAGATCCCCAACGC
TCACCGGGCCCGGGTGACATGCGTGGCAGTGCACATGGACAGCAAGCTGG
CCTACATGGTGTCGGCCAGCGAGGACGGCTGCGTGCGCGTGTGGGCGCTG
CGGACGAGGTAGGTACTGCAGGCCGCCGCCTGTGAGCCCGAGCTTAGAAG
AGGAGGCGGAGAGGAGGCGGGTGTCTCGGCCCGGCGTGGGGTGCCTGCGC
CTACTCTGTACCTATCTCTCGCCTGCGGCGGATTGGATCGGATCGGTCGC
CGTTGCCGGCCGGCCTCCTGGCGCTGCTAGCGCTATGTACTGCTCGTACT
AGGAAGTGTTGTACTTCGATGTAGAAGTACTTGGAAGAAATACAGTACTC
AGTATAGTGCACAGTACAGTAAGTAACAAGCGCTCGGAGTGCCCAAGCGC
AGTGCCTACGGTGGAAGCGGCTGGGAGAGGGATCCCTAGACGGACCCTTG
GCGGGCGGGGGGGCACCAAGGGTCTCTCCAGCACCGTGACACTGTGCTGG
TGTTGGTTTGGGCAGGCGGGCATCATCACACATCCGCCACATCAGGCCAG
GCCGCAAGCAAGCAAGCACCCTGAAGATAATCAGTGCCGGCATCAGAACT
CAGCTCTGCCTACGCCCCCCCGTCTCCCTGGACAACTACTAGTACGAGAA
CATGCAATCTCACGCACATGCGATTGTACCTTGTTACAATATGTATGAAT
TACCCCCGCTCAATGCCCCCCCCCCCCGTGCGGGAAAAGGGAGCTCATGT
TGCAGTTTGTGGAGCACCAGAAAGGCGTGCGCGGGCTGGTGGTCGACGTG
GCCAACCCGGGCCTGGTTCACAGCGTGGGGGAGGACTGCACCATCTTCAC
GTACGACCTCCGCAAGGAAAAGAGGACCGTCGCGCACATGTGAGTAGGCA
ATGCCTCTAAATTGGGTTGTAGGTTAAGTACGTACGACCTCCGCAAGGAA
AAGAGGAGCGTCGCGCACATGTGAGTAGGCAACGCCTCTAAATTGGGTTG
TAGGGTCAAATACGTCCTTTGAAGTACGACCTCCGCAAGGAAAACAGAAC
CGTCACGCTCATGTGAGAGGCGAGCCTGCAGCTCAGGTGTCCCCCTCCAG
GGGTGTGGGGGGCCCCTGGGGGGGAGAAGACGGCGGGGAGGGCTGCACGG
TATTCGTAGTCGTGTTGTGCTCAAGTGTCTACTGCTTAGAGCTCGAAGTT
TGTGTACCTGAAGTAGGTAACTTGTCCTGATTGATTCAGAGCACCCCTAC
TACAGTTACAGCTCACGCGCTCTAGTGCTTAGAGCTAGAGGTTGTGTTCC
TGAAGTAGGTAGGTACTGTCCCGATTGATCCAGAGGGACCGTTACTACAG
GTCCAGCGGGATGGCCCTGCTCCGCTGCCGCTGGCACACCCTGCCCAGGA
GGCTTCCCGGACATGCTCAGCCTCTCTACCATCCCGTATGCCAACTGGCG
GGCAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCCTCTCTCTCAC
GCACACATATGCACGCGCGCACCGTATTCAATAACGCACACGCGCGCATG
CATGAATGTACACCACACACACACACGTGCGCACGCACTCACACACTCAC
GCACACACGCGCGCATGTACACACCCAGGGCACGGTCGGGGGCCTTCCAG
TCTCTCACGCAGCGGCTGGACTCCGAGCAGGAGCTGGTGACGTGCGACAG
CAATGGTCGTCTGCTGGTCTGGGACTGCGACTACCGGGACCCGGTTCAGG
TGATGTCCGATGTCCGCCTCTAGTGCCAACAGTTTCTTGTGATTAGGTTC
CCGTCCTGCAGCAGGGCACTGCGGGCTCTGTTTTGGGATAGGGAGTCCCC
TGCAGGTGGCCGCCTGTACCTGAAATAATCTTAATTTTCTTTCGCAATAT
TGAAGCACTCGACACTACTTGGACGTACGCGCATACCAAAGTAGCACGCG
CACTGCAATAAGTAGTACTCAAGATACTCTATATACTGCAGTTGTGTGTC
AGCCCAACCAGCGCTGACAGCATGACCGGAGGATCGACCCCCGCCGCCCG
GGTGACGTCCCCTTCCTTTCCCTCCAAAAGTTCTCCCCTGTGGGACACGG
TCAATGGTCCTACCACTAATTCCGTTACGGCTGACATCCAACCCCCCCAC
ATACACACACTTCTCCCCTGCACCGTTTTCCACACCCTCCAAGACCCGTC
CTGTTTTATGCACGGTCAATGGGGTCATATATGTGCTCACATAGATATAG
ATATACCTCGAACTATATTATATTGGCCAGCCCATATTGTGTACGCATGC
CTGCCCTTGCCCGCTCGTAGGTCTTCCCTGCCTCATGGCCTCCGCAGGCT
CTTTCGTCCCCTTGTATATATATGTACAAGTACTCACGTGGTGCTTGCCG
TAGTCCCGAGGCCATTGACCACGCGCCTCGGTCGAGACGGAGCAGGTGGT
CATACGACTGTTAATTATGGCAGACATATCATGAGCACCCTCCCCCGCAC
CATCGCCATCTTCCAGGCCCTGCAAGACCCGTCCTGCGAGCGCCTGCGCT
GCATCAGCGTGTCCCCCTCCGGCCGCTACCTGGCCCTGGCCGGGGATGAC
AAGACCGTCAAGGTGAGAGCCGGGCGCCGGCGCTAGAGATGCCTGCTGCA
GTCAGCGATTGTGTTTTGGTTTCGTGGCTCAGGTGCCCTCAAGTCCTGCC
AGGTGCAGCTGGTGTGTGTGTGTGTGTGTGTGTAAGCCGAAGTCGGCGTC
GGTCGCATGGATGTACCTACTTCGAAGCAGGTATGGGAGGGTTTGGGTAT
TTGTGACCGTGGCTGGCTTGGAAGCGGGTGGGTTGTGTAGGATACTGGTT
TCAACTTCATCCCCGAGATGACAAGACGCGCCTCTGCACTGTTTGGTGCT
CCTGCAATGCTTACTCGCACGCAACCTGAAGTTTCCAGGAAGTTCCCCGG
AGTCTGTGTTCTGCAGTGTGTGCGCGCAGCCCGACATGTCTCTGCTCGCG
GTACCGCTACGCAAGCAAGTGCGTACTCTGCTGCAGGCGCGTTTACAAGG
CTTCGTGATTCGAAGCGCTGCAGTGGTGTAAGGTACTTCGACGTACTTTT
ATGAGGAGGAAACTCACACATGCTAAACCTACCGCCTACCAAGTACTCGT
ACTCCGCTCGTATTTCGAAGTACATTGCTAGTGCTGCATTGTGTGCACGT
TTGGTGCGTTAAAGCAGTACGTCAAACAACTCCGTGCCCCAAACCGTGCG
CATGTACAGCAGGTGCCTTGTTTGAAGGGTCGCCCTCGTACAGTGCCGGA
TGATGGGCAATGCCCCCCCAACGCGGCCTACAGTGCACTAAGTACGGTAC
TGTAGTTCCTTTGGGCGCACGAGACCTGGACCTCTGTCACCCAGCGCACA
CACGTTGAACACCCTGCACAAGAACGCACTGTGCCCAATCCCCCGGAGAA
TCTTTCTCCTCCTCTGCAGGCGTGCTCCCTCCATCCTTCCGGAGTGACAG
TGCCGATTCCCCACTGGCACGACAAGCGACGGCGACGGCCTTTGAAGCGT
ACTTCCAAGTACTGTGCAGTGACAGCAAGTACTTCGAAGTGCTCGAAGAC
TTCCCGAGTCCAAGCACTTGGAAGCATAGGTCCGCGGGCACGGTCTACTA
CAGCACGATGGCCATGACCACGGCGCCCGGTCCCTCTCTTCCCTGTGCCC
CCCCGAGCTTGCCACGCCCACGCTGATTCCCCCCGTGGCAATGCGCGGCA
ACCGTGGCACCCGCACGCAGGTGCTGGACATCAAGGACGGGTTCGCACCG
GTCGCCAACGGACGCGCGCACTCCGAGCCCATCACGAGCCTCAGCTGGGT
GTCGGACGAGCGCCAGCTGGTGTCCGCCGGGGAGGACTGCGCCATCTGCG
TGTGGAATTTCTATGGGCCGGCCGATGGGCCGGCCGACGGGCCGGCCGAT
GGCGGCGGCGCCGTCGGGCCCGGGCCGACCGGCACCGGCTTGAACTCTGA
GCCCGGTGCTTGAGCATGGCATCTGCTGCAGCATACATATATACCCGTTA
CTCCTGTCGGAGGGCAAACCTGAAGTTTCGACTTAGGGCTGTCGGCATTG
CACGCACGGTTATGTCGCAAGACAAGCCAATGAGTCCATATATATATATG
CACAGAGCCCCCTGAAGTGGTGTGCGTCGCGGGGGCTGGCGGGGCATGGG
GTGGCGACCTTTACGGCTTGAATTTCTCAGGCCCTCAGGGCCACATGCTC
GTGGGGCGCTTACCGCGCTGTCTCAAGACATGTCAGCCGTTATTTGTGCT
GGTACTGCGGCAAGAACTGTACTCGTGGTACATAAAACACTAAGTGCACT
TGTATGTGGCAGTCATTAATGCGGGGGATGCAGGAGGATGGCTGCAGTGC
CCCCCATGCCCTGCGGGTGACAGGTCCCGAACAGGCGGCCCGAGTGGCTT
GCGCCTGCTCCTCTCTTACGGATGTGGGGCCGGGGCGTAGCTCCGTTTTG
GCCGCAGCGGCCGAGAGAGCCCACCCTTGGTTTCTTGGGCTTGGTGTGGC
CAGAAGCTCAGTCCGTTCTTCCCCATAAGAACCGTGGGCGTCAGTGCCGC
AGCGGCAGTCACGGCTGCCCCTGCGCGCCTTCCTCTTGAGTGTCATCTGA
GTCGTGGCCGGGACTGGGAGCATGGGAAAATGTTTTCGTCAGGTCCGGGG
ACGCTCCAGGCGCAAGTTGAGCAAGGACTTTGAACGCATGATATGTCAAA
C
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:847626..852426-

>mRNA_S-ischiensis_contig11.2065.1 ID=mRNA_S-ischiensis_contig11.2065.1|Name=mRNA_S-ischiensis_contig11.2065.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1368bp|location=Sequence derived from alignment at S-ischiensis_contig11:847626..852426- (Schizocladia ischiensis KU_0333)
ATGGACAGCAAGCTGGCCTACATGGTGTCGGCCAGCGAGGACGGCTGCGT
GCGCGTGTGGGCGCTGCGGACGAGATGGACAGCAAGCTGGCCTACATGGT
GTCGGCCAGCGAGGACGGCTGCGTGCGCGTGTGGGCGCTGCGGACGAGGG
AGCTCATGTTGCAGTTTGTGGAGCACCAGAAAGGCGTGCGCGGGCTGGTG
GTCGACGTGGCCAACCCGGGCCTGGTTCACAGCGTGGGGGAGGACTGCAC
CATCTTCACGTACGACCTCCGCAAGGAAAAGAGGACCGTCGCGCACATGG
AGCTCATGTTGCAGTTTGTGGAGCACCAGAAAGGCGTGCGCGGGCTGGTG
GTCGACGTGGCCAACCCGGGCCTGGTTCACAGCGTGGGGGAGGACTGCAC
CATCTTCACGTACGACCTCCGCAAGGAAAAGAGGACCGTCGCGCACATGG
CACGGTCGGGGGCCTTCCAGTCTCTCACGCAGCGGCTGGACTCCGAGCAG
GAGCTGGTGACGTGCGACAGCAATGGTCGTCTGCTGGTCTGGGACTGCGA
CTACCGGGACCCGGTTCAGGGCACGGTCGGGGGCCTTCCAGTCTCTCACG
CAGCGGCTGGACTCCGAGCAGGAGCTGGTGACGTGCGACAGCAATGGTCG
TCTGCTGGTCTGGGACTGCGACTACCGGGACCCGGTTCAGGCCCTGCAAG
ACCCGTCCTGCGAGCGCCTGCGCTGCATCAGCGTGTCCCCCTCCGGCCGC
TACCTGGCCCTGGCCGGGGATGACAAGACCGTCAAGGCCCTGCAAGACCC
GTCCTGCGAGCGCCTGCGCTGCATCAGCGTGTCCCCCTCCGGCCGCTACC
TGGCCCTGGCCGGGGATGACAAGACCGTCAAGGTGCTGGACATCAAGGAC
GGGTTCGCACCGGTCGCCAACGGACGCGCGCACTCCGAGCCCATCACGAG
CCTCAGCTGGGTGTCGGACGAGCGCCAGCTGGTGTCCGCCGGGGAGGACT
GCGCCATCTGCGTGTGGAATTTCTATGGGCCGGCCGATGGGCCGGCCGAC
GGGCCGGCCGATGGCGGCGGCGCCGTCGGGCCCGGGCCGACCGGCACCGG
CTTGAACTCTGAGCCCGGTGCTTGAGTGCTGGACATCAAGGACGGGTTCG
CACCGGTCGCCAACGGACGCGCGCACTCCGAGCCCATCACGAGCCTCAGC
TGGGTGTCGGACGAGCGCCAGCTGGTGTCCGCCGGGGAGGACTGCGCCAT
CTGCGTGTGGAATTTCTATGGGCCGGCCGATGGGCCGGCCGACGGGCCGG
CCGATGGCGGCGGCGCCGTCGGGCCCGGGCCGACCGGCACCGGCTTGAAC
TCTGAGCCCGGTGCTTGA
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