mRNA_S-ischiensis_contig11.2063.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2063.1
Unique NamemRNA_S-ischiensis_contig11.2063.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig11.2063.1 vs. uniprot
Match: A0A835ZFU5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFU5_9STRA)

HSP 1 Score: 160 bits (404), Expect = 1.820e-41
Identity = 93/224 (41.52%), Postives = 117/224 (52.23%), Query Frame = 1 
Query:    1 ITALGGEVGVHDNPRQGTVFFFDIPYRPDFVLEGALDMPVGLRSGPTSPASAEALTVPNTPGVGARASEDGGGDDAKLVLLVDSRPSTHRTGTEVLQRGLFQVRHATNGLEGLKRMRERVYSAVLIEFNVNVMDALQVLQKFREWEASPGSGRS------------------GEAEKQFICVMFGGVPEEVELNTTIKSGADAVWTDPLIPHAADILIMLDDER 618
            +TAL GEVGVHDNP  G+ FFFDIPY+PDFVLE A+                EA                 GGD    +LLVD+RP T  T   +L+R  F V  A+NG EGL +M+ + Y+ VL++++V VMDALQVLQKFR+WE SP + R                                  P   E+N  +  GADAVWTDP++P A D+L ML DER
Sbjct:  557 VTALRGEVGVHDNPGGGSNFFFDIPYKPDFVLETAM----------------EAQAAXXXXXXXXXXXXXPGGDARHTILLVDNRPVTRDTAARLLERQGFVVNFASNGFEGLMKMQRQAYTIVLLDYHVVVMDALQVLQKFRDWECSPSAQRQRTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPLPEVNAALNGGADAVWTDPVLPAARDLLAMLADER 764
[Close]
BLAST of mRNA_S-ischiensis_contig11.2063.1 vs. uniprot
Match: A0A7S0Z3C2_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0Z3C2_9CRYP)

HSP 1 Score: 79.0 bits (193), Expect = 2.330e-13
Identity = 64/205 (31.22%), Postives = 93/205 (45.37%), Query Frame = 1 
Query:    1 ITALGGEVGVHDNPRQGTVFFFDIPYRP-----DFVLEGALDMPVGLRSGPTSPASAEALTVPNTPGVGARASEDGGGD----DAKL-----VLLVDSRPSTHRTGTEVLQRGLFQVRHATNGLEGLKRMRERVYSAVLIEFNVNVMDALQVLQKFREWEASPGSGRSGEAEKQFICVMFGGVPEEVELNTTIKSGADAVWTDPL 573
            I  LGG  GV  N  +G+VF+F IPY P     +  LE       G+        SAE     NT            GD     AK      VLL++    T R  T+ L++  F V  A NG EGL++++E  YS VL +  + VMD ++ +++FR+WE    S   GE   QF+C +     E  ++  T   G +  +  P+
Sbjct:  394 INVLGGACGVEANTPKGSVFWFKIPYVPCTPEAESSLEEVQPSGRGVWHN-----SAELTFSSNTRAERVVERGASAGDVLTGSAKAAGKGTVLLIEDDVPTRRLMTKALEKQKFSVVQAGNGEEGLEKLKESRYSMVLCDIMMPVMDGVECIRRFRQWEQGQASREGGE---QFVCALSANT-EASDVEKTRNVGMNDFFPKPV 589
[Close]
BLAST of mRNA_S-ischiensis_contig11.2063.1 vs. uniprot
Match: A0A7S1DCE0_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DCE0_CYCTE)

HSP 1 Score: 58.5 bits (140), Expect = 1.580e-6
Identity = 28/68 (41.18%), Postives = 42/68 (61.76%), Query Frame = 1 
Query:  235 VLLVDSRPSTHRTGTEVLQRGLFQVRHATNGLEGLKRMRERVYSAVLIEFNVNVMDALQVLQKFREWE 438
             L++D      ++    L R  ++V  ATNGLEGLK ++ RV+  VL +F + VMD L  +Q++REWE
Sbjct:   93 ALVIDDSLVIRKSMFRALSRLGYEVTQATNGLEGLKELQARVFDLVLCDFLMPVMDGLDCVQQYREWE 160
[Close]
BLAST of mRNA_S-ischiensis_contig11.2063.1 vs. uniprot
Match: A0A7S1URE2_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1URE2_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.870e-6
Identity = 27/79 (34.18%), Postives = 46/79 (58.23%), Query Frame = 1 
Query:  202 SEDGGGDDAKLVLLVDSRPSTHRTGTEVLQRGLFQVRHATNGLEGLKRMRERVYSAVLIEFNVNVMDALQVLQKFREWE 438
            S+   GD  +  L++D      ++ +  L++  F+V  A NGLEG K+++  VY   L +F + VMD L  +Q++R+WE
Sbjct:   26 SQKDSGDRVRRALVIDDSLVIRKSVSRALKKLGFEVTVAANGLEGFKQLQSNVYDVALCDFLMPVMDGLDCVQQYRDWE 104
[Close]
BLAST of mRNA_S-ischiensis_contig11.2063.1 vs. uniprot
Match: A0A1Z5JKP8_FISSO (Response regulatory domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JKP8_FISSO)

HSP 1 Score: 57.0 bits (136), Expect = 7.850e-6
Identity = 31/117 (26.50%), Postives = 59/117 (50.43%), Query Frame = 1 
Query:  229 KLVLLVDSRPSTHRTGTEVLQRGLFQVRHATNGLEGLKRMRERVYSAVLIEFNVNVMDALQVLQKFREWEASPGSGRSGEAEKQFICVMFGGVPEEVELNTTIK---SGADAVWTDP 570
            + VL++D    T R  +   ++  F V  A+NG EG+++++  +Y    ++ ++ VMD  +  +K REWE S   G      +Q IC +     ++ E +  +K   +G D + + P
Sbjct: 1122 RKVLIIDDSNVTRRMVSRAFEKADFIVDTASNGAEGVEKLKASIYDIAFMDIDMPVMDGFEATKKLREWEDSMRPGA-----RQPICALTATYVDDFERSELMKFKEAGLDVMESKP 1233
[Close]
BLAST of mRNA_S-ischiensis_contig11.2063.1 vs. uniprot
Match: A0A1Z5JWH7_FISSO (Two-component system, chemotaxis family, sensor kinase CheA n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JWH7_FISSO)

HSP 1 Score: 56.2 bits (134), Expect = 1.250e-5
Identity = 32/115 (27.83%), Postives = 59/115 (51.30%), Query Frame = 1 
Query:  229 KLVLLVDSRPSTHRTGTEVLQRGLFQVRHATNGLEGLKRMRERVYSAVLIEFNVNVMDALQVLQKFREWEASPGSGRSGEAEKQFICVMFGGVPEEVELNTTIKSGADAVWTDPL 573
            K  L+++      +T T  L+   +  + A +GLEGLK +++ VY  VL +F + VMD L  ++++REWE+     +   + +Q+I  M   +  E   +   ++G D     P+
Sbjct:  499 KCALVIEDSLVVRKTITRALKSLGYSTKEARDGLEGLKCLKDSVYDVVLCDFLMPVMDGLDCMKQYREWES-----KERPSLRQYIVGMSAHISSEAS-HQGFEAGMDDFRPKPI 607
[Close]
BLAST of mRNA_S-ischiensis_contig11.2063.1 vs. uniprot
Match: A0A1Z5K6T3_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K6T3_FISSO)

HSP 1 Score: 55.5 bits (132), Expect = 2.450e-5
Identity = 44/166 (26.51%), Postives = 74/166 (44.58%), Query Frame = 1 
Query:    1 ITALGGEVGVHDNPR--QGTVFFFDIP------------YRPDFVLEGALDMPVGLRSGPTS--PASAEALTVPNTPGVGARAS----EDGGGDDAKLVLLVDSRPSTHRTGTEVLQRGLFQVRHATNGLEGLKRMRERVYSAVLIEFNVNVMDALQVLQKFREWE 438
            I +L G  G     +  QG++F+F +P            +   F +    ++    R GP +    SAE  +    P  G+  S    E+ G    K  L++D      +T    L +  F+V  A +G  GL  M++ ++  VL +F + VMD L  ++++REWE
Sbjct:  489 IKSLDGTYGYRKRGQNLQGSIFWFSVPLIVTGIQGDESVHSFSFSMNSNSNLHSFQRRGPANGTATSAETTSFGRCPSNGSLNSLSSQEEEGAHRVKRALIIDDSVIVRKTIDRALTKLGFEVEQAEDGSVGLNAMKQTMFDMVLCDFLMPVMDGLDCVKQYREWE 654
[Close]
BLAST of mRNA_S-ischiensis_contig11.2063.1 vs. uniprot
Match: A0A7S3PZ35_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PZ35_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 3.560e-5
Identity = 22/46 (47.83%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:  301 FQVRHATNGLEGLKRMRERVYSAVLIEFNVNVMDALQVLQKFREWE 438
            F+VR A NGL GL+ M+  VY  VL +F + +MD +  +Q++REWE
Sbjct:   20 FEVRQAENGLVGLEEMKGTVYDIVLCDFLMPIMDGVDCIQQYREWE 65
[Close]
BLAST of mRNA_S-ischiensis_contig11.2063.1 vs. uniprot
Match: A0A7S3PZG8_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PZG8_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 6.400e-5
Identity = 25/70 (35.71%), Postives = 40/70 (57.14%), Query Frame = 1 
Query:  229 KLVLLVDSRPSTHRTGTEVLQRGLFQVRHATNGLEGLKRMRERVYSAVLIEFNVNVMDALQVLQKFREWE 438
            +  L++D   +  +     L    F+VR A NGL GL+ M+  VY  VL +F + +MD +  +Q++REWE
Sbjct:  117 RCALIIDDSLTIRKVFERALVSLGFEVRQAENGLVGLEEMKGTVYDIVLCDFLMPIMDGVDCIQQYREWE 186
[Close]
BLAST of mRNA_S-ischiensis_contig11.2063.1 vs. uniprot
Match: A0A525ISB6_9CAUL (Response regulator n=1 Tax=Phenylobacterium sp. TaxID=1871053 RepID=A0A525ISB6_9CAUL)

HSP 1 Score: 51.2 bits (121), Expect = 6.590e-5
Identity = 33/114 (28.95%), Postives = 56/114 (49.12%), Query Frame = 1 
Query:  229 KLVLLVDSRPSTHRTGTEVLQRGLFQVRHATNGLEGLKRMRERVYSAVLIEFNVNVMDALQVLQKFREWEASPGSGRSGEAEKQFICVMFGGVPEEVELNTTIKSGADAVWTDP 570
            KL L++D      +    +L+   F+V  A +G EGL   R  +  AVL+++N+ VMD L+ LQ+ R+    PG    G+A +   C +   +     + + + +GAD     P
Sbjct:    2 KLALVIDDSRVVRKVARRILEDLDFEVAEAGDGAEGLAWCRTEMPDAVLLDWNMPVMDGLEFLQRLRQ---EPG----GDAPRVVFCSVENDLDR---VRSALDAGADEYIMKP 105
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2063.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A835ZFU5_9STRA1.820e-4141.52Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0Z3C2_9CRYP2.330e-1331.22Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A7S1DCE0_CYCTE1.580e-641.18Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A7S1URE2_9STRA2.870e-634.18Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A1Z5JKP8_FISSO7.850e-626.50Response regulatory domain-containing protein n=2 ... [more]
A0A1Z5JWH7_FISSO1.250e-527.83Two-component system, chemotaxis family, sensor ki... [more]
A0A1Z5K6T3_FISSO2.450e-526.51Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A7S3PZ35_9STRA3.560e-547.83Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S3PZG8_9STRA6.400e-535.71Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A525ISB6_9CAUL6.590e-528.95Response regulator n=1 Tax=Phenylobacterium sp. Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:813868..817909 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score64.3
Seed ortholog evalue8.3e-08
Seed eggNOG ortholog760117.JN27_04940
EggNOG free text desc.PhoQ Sensor
EggNOG OGs1NRP8@1224,2VGZQ@28216,472D0@75682,COG0642@1,COG2205@2
COG Functional cat.T
Best tax levelOxalobacteraceae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons6
Model size677
Cds size675
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2063.1prot_S-ischiensis_contig11.2063.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 813868..817909 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815593.4503183-CDS-S-ischiensis_contig11:813867..8139951622815593.4503183-CDS-S-ischiensis_contig11:813867..813995Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 813868..813995 +
1695739791.2188277-CDS-S-ischiensis_contig11:813867..8139951695739791.2188277-CDS-S-ischiensis_contig11:813867..813995Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 813868..813995 +
1622815593.4650233-CDS-S-ischiensis_contig11:814287..8143931622815593.4650233-CDS-S-ischiensis_contig11:814287..814393Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 814288..814393 +
1695739791.231043-CDS-S-ischiensis_contig11:814287..8143931695739791.231043-CDS-S-ischiensis_contig11:814287..814393Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 814288..814393 +
1622815593.47853-CDS-S-ischiensis_contig11:814965..8151421622815593.47853-CDS-S-ischiensis_contig11:814965..815142Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 814966..815142 +
1695739791.2397542-CDS-S-ischiensis_contig11:814965..8151421695739791.2397542-CDS-S-ischiensis_contig11:814965..815142Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 814966..815142 +
1622815593.4911685-CDS-S-ischiensis_contig11:816533..8166381622815593.4911685-CDS-S-ischiensis_contig11:816533..816638Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 816534..816638 +
1695739791.2496955-CDS-S-ischiensis_contig11:816533..8166381695739791.2496955-CDS-S-ischiensis_contig11:816533..816638Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 816534..816638 +
1622815593.50719-CDS-S-ischiensis_contig11:816997..8171161622815593.50719-CDS-S-ischiensis_contig11:816997..817116Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 816998..817116 +
1695739791.2629578-CDS-S-ischiensis_contig11:816997..8171161695739791.2629578-CDS-S-ischiensis_contig11:816997..817116Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 816998..817116 +
1622815593.5181286-CDS-S-ischiensis_contig11:817869..8179091622815593.5181286-CDS-S-ischiensis_contig11:817869..817909Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 817870..817909 +
1695739791.272108-CDS-S-ischiensis_contig11:817869..8179091695739791.272108-CDS-S-ischiensis_contig11:817869..817909Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 817870..817909 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2063.1

>prot_S-ischiensis_contig11.2063.1 ID=prot_S-ischiensis_contig11.2063.1|Name=mRNA_S-ischiensis_contig11.2063.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=225bp
ITALGGEVGVHDNPRQGTVFFFDIPYRPDFVLEGALDMPVGLRSGPTSPA
SAEALTVPNTPGVGARASEDGGGDDAKLVLLVDSRPSTHRTGTEVLQRGL
FQVRHATNGLEGLKRMRERVYSAVLIEFNVNVMDALQVLQKFREWEASPG
SGRSGEAEKQFICVMFGGVPEEVELNTTIKSGADAVWTDPLIPHAADILI
MLDDERLYRAERSWAAAQGPGPPPR
back to top

mRNA from alignment at S-ischiensis_contig11:813868..817909+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2063.1 ID=mRNA_S-ischiensis_contig11.2063.1|Name=mRNA_S-ischiensis_contig11.2063.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4042bp|location=Sequence derived from alignment at S-ischiensis_contig11:813868..817909+ (Schizocladia ischiensis KU_0333)
ATCACGGCACTGGGAGGGGAGGTGGGCGTCCATGACAACCCCCGCCAGGG
CACAGTCTTCTTCTTTGACATCCCGTACCGACCGGACTTTGTGCTGGAGG
GCGCGCTAGACATGCCCGTGGGCCTCAGGTGCGTAGAGCTGTCTATCTGT
CGAAGGCGCATCACGTCACATCGAGGCAGGCACAGCACATCACATCACAA
GGCTGTGATGGCAATTCTGCATGTGATGTGATGCGATGTCAAACCGCGGT
GTATTCAATCGAATACACGCCTCATCAAGTCACACCACGCCGTGTCCAAC
TACTGCATCACATCACTTCACGCCACATCCCGTACTCGTACCCGTATACT
TCCTCCCTCTCCCTTCTCACGTCCTTCCCACTTGTCCCCTCCGCCCCCTC
TCTGCTTGCGGCGAGCGCAGGAGCGGCCCAACGTCCCCTGCCTCTGCCGA
GGCGTTGACGGTGCCCAACACTCCCGGGGTCGGGGCCAGGGCTTCGGAGG
ATGGCGGAGGAGACGACGCCAAGCTGGTGCGTGCTTGCCCCTTTCCCCCC
TGGTAAATTGGAATTATACACTAAACCTCTATGATTATACAGACCTCAGG
GGTAAAAGGGTTAACTTATCCTTGCTCCCGCCGCACACGAGCTCTCGAAT
GTTTTTGCAGGAGCGCCTGGTCATGGCGCCCGAATCTGTTGGCCTGTGGC
CCGCACTGTACTGCACTGTACTGTACTGCACTGCACTGTACTGTACTGTA
CTGTGCTGTGCTGTGCTGTACGACGCGTATGCCGGTACTTGCTAGCCCGC
ACACTCGCGCGCGCGAGATGCTTTGTGATGAGTCCGCACGCACCTGCGGG
CAGGTGGACATGAGTCGCACCAACGAACGAGTGCAAACGCGCACACGAGC
TGCGTGTGCACACACACCTGCACACACATGCAAAGACAAACACACACGAT
TTCCGTCCTCGGCTGTTGTTGTTGTTGCTGCTGCTGCTGCTGTGGATGGC
GAAGACGAGGACAATGACGAAACGACAATGATGATGATACTTAGGATGTG
ATGAAGGCGCTGACGATGCCACCGCGATACCCGATTTGCGTCGCGCAGGT
GCTGCTGGTGGATAGCCGGCCCAGCACCCACCGCACGGGCACGGAGGTGC
TCCAGCGCGGCCTGTTTCAAGTGCGCCACGCCACCAACGGCCTCGAGGGC
CTCAAGCGCATGCGCGAACGCGTCTACTCAGCCGTCCTGATCGAGTTCAA
TGTCAATGTTATGGACGCTCTGCAGGCAAGTCCGATAGCCCGACGATGCG
ACTGTAGCAGCTGCCTCCGACGATGCGACAGCAGCTGCCTCCGACACCGA
CGTCACCGCCGATGTTCCCCCACAGTCGCCGCCGCCGCCGCAAAGCCATC
ATCATCATCATCACCACCACCATCACACCACCGCCAGCGTGACCACATCC
ACCACCATTGCCACCACCATGACTGGCATTACTGGCACCACCATCACTGG
CACCGCCATCGCCTCCTCCGCCGCCGACGCCACCACTGCCACCATAGCAT
TACCCCTGTCTTTGCCACCACTGCCACCATCACCGCCACCACCACCACCG
CCGCCTCCGCGGCCGCTACCGCTGCCACCACCAACAGCGGCTACTTTCTA
ACAGGAAGCATCACATCACATCGGGAAATGCTCCGTTTGATGCCGACCAG
CCACGACATGCTGTCCTCGCACCCAACAGAGCTTGCTGTACAACACTTGC
AGTAGTTGTTCCAAGACCATGGACCACCCACTCAACCGAGATGGAGCAGC
CTCCCCCCCCCCCCCATGCCTGGGCGTACTGGCCCTCGCTCGCCCGTGGT
CAATGGTCTCGGGACTAGGTAGGCACAGCAAGCACGGTGTGCACTTGGCA
GTATGCAGTGCCTAGTGCTTCCAAGTGCAAACGTACATACATACATGTGC
TGCATGTTGCCAGGGGCGGGAGGCCCTGGGCCTGCTCCGTCTCGGGACGA
CCACAGCAAGCACGACGCGAGTACATACCTTGACACACCTTCACGTTTGT
TTAGAAACAGTACGGCCAGTTGTGGGCGGTGATTCATATAAATTGCAACG
AGGTACAATCGCACTCGTGTGTGATTGATTGTTCTCGTATTAGTAGTTGT
TTCATTTAAGAATTGAATGCTACTATATTAGTGGTTGTCACATCAAGGGA
CTAAGAACAAAGTGGGTGGGGGGCGGAGGGGAAAAAACAAAAACGAAGGG
CAAGAGAGGGGGGGAAAGGAAAGAAAAAAGCTGTTGTGGGCCCCGTGATT
CCGTCCCAAAACCCGGGACTCAGCAGAAGCCCTCTCAATCCCTCGCAGCG
CAGTAATACGGTGTACGAGTAAAAACTGTAGTGTGATGTGATGTGATGTC
AAACTGCAGTACTGCAGTACATGAGAGTAAACATCACATTACATCACGTC
GCATCACATCACAACACGGTATACAAAGTACCGTAGACGTGATGAGCTTG
GAAGGCTTGTATACATGTACTCACTTTGTGCTTGCCATAGTCCCGAGACC
ATTGACCGCGCGCCTCGGCCGAGACAGAGCAGGGAGGGGCGCAAAGTGCT
CCGTGCTTGCAGCCCCCGCCTCCAGCCTCACCTCGAGGGACCGACCTGCA
ATCGGTCTGCGCGCAGGTGCTGCAAAAGTTCCGAGAATGGGAGGCGTCGC
CCGGCTCCGGTAGGAGCGGCGAGGCGGAAAAGCAGTTCATCTGCGTAATG
TTCGGGGGGGTGCCCGAGGAGGTGAGAAAGGGGGGGAAAGAAGGCCCGCC
GGCCATTGGCTCGCAGCGCCCCTAAGTGTTGTGCTGCGAGGGAGGGTGCT
GGCTGTTCAATGGCACTGGCCCAGCGCGGCTTGCTCGCCGACCCCGGCTT
GTTTGTTGGGACATGAGGGCAACCTTGTCGCGTAGGTGCCTGATGCGTTG
AAAGCCGGCCCGTGCTTGCTTCCAGAATTTCTCCGCTGTACTGTACTGTA
CTGTACTGTACCAAGTACTGTGTATGTGCTGCAGTACCTGCAGCGGTCAT
ATGATCCCATGTGATGTGATGTCAAACTACTGCGTCGCACCACACGTGCG
ACCGCTGCTCCCCCCGCGCCCGGCCCGCAGGTGGAGCTGAACACCACAAT
AAAGTCGGGGGCGGACGCGGTGTGGACGGACCCGCTCATCCCGCACGCAG
CGGATATCCTCATCATGCTGGACGACGAGAGGCTCTACCGGGCCGAGAGG
CGAGTTGTGCCGCGCTGGACAAAAACGGGCCGAAGAGTTAAGGGGGATGC
CCGCTTGCGCCAGGCGGGCGCAGACCGGCTTTGTACGTTTTTCACCGGCT
GTCGTGAACAACACGCTTGCTGGGAGCGTACCACTGTATGTGCAGTAGGA
GTACAGTACTCATGTTTTTAGCGTAGCAGAAGGCTGGTTAACAGAGGGGC
TGGCTTTCTGCGCTTTTTTCAGGGGCCGTCAGCATGCTGGGATATGTGAT
GTGCTTTCGAAGATGATGCTTCGTATATATACGAAGAACTTCGAAGTACA
GAGTTTCGAAGATGGCCTTGCCAAGTACATGTGGAGAAGACATTCCAAGC
GCGGGGCGGTTAACCGCGCCACTGATGCCCGACTTCAACGGGGGGGGTTC
CTTCCTTGACTGCACTGTGCTCGCGATATGGCAGAGCAAAAATCGGCCGC
ACGGGGGGGCAGGGTGCTGCCACCTGCGTGATACAACAGGGTGTACTGCT
GGTACTGTTCCAGTAACCTCTCGACGTGCTCGCCGTGCTTGGTCCTAGGG
TTAAGGGCTTGACCCCACTTCGGCTTCCACTTGGAAGTTCTTGGGTACTT
ACTCGTACGCTTTGAAGTACTGTACCGGCATGTCCAAGCCTTCCCAAACC
AGGGCCCTACTTCGAAGTACCATACTCGAGTACATGCGCAACTCTGAGCC
CTGCCTGACCCTCACCGTAGCCCTGTGCCAAAAACCGCCCTGTGGTCTTC
AGGAGCTGGGCCGCGGCGCAGGGGCCGGGCCCTCCACCACGG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig11:813868..817909+

>mRNA_S-ischiensis_contig11.2063.1 ID=mRNA_S-ischiensis_contig11.2063.1|Name=mRNA_S-ischiensis_contig11.2063.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1350bp|location=Sequence derived from alignment at S-ischiensis_contig11:813868..817909+ (Schizocladia ischiensis KU_0333)
ATCACGGCACTGGGAGGGGAGGTGGGCGTCCATGACAACCCCCGCCAGGG
CACAGTCTTCTTCTTTGACATCCCGTACCGACCGGACTTTGTGCTGGAGG
GCGCGCTAGACATGCCCGTGGGCCTCAGATCACGGCACTGGGAGGGGAGG
TGGGCGTCCATGACAACCCCCGCCAGGGCACAGTCTTCTTCTTTGACATC
CCGTACCGACCGGACTTTGTGCTGGAGGGCGCGCTAGACATGCCCGTGGG
CCTCAGGAGCGGCCCAACGTCCCCTGCCTCTGCCGAGGCGTTGACGGTGC
CCAACACTCCCGGGGTCGGGGCCAGGGCTTCGGAGGATGGCGGAGGAGAC
GACGCCAAGCTGGAGCGGCCCAACGTCCCCTGCCTCTGCCGAGGCGTTGA
CGGTGCCCAACACTCCCGGGGTCGGGGCCAGGGCTTCGGAGGATGGCGGA
GGAGACGACGCCAAGCTGGTGCTGCTGGTGGATAGCCGGCCCAGCACCCA
CCGCACGGGCACGGAGGTGCTCCAGCGCGGCCTGTTTCAAGTGCGCCACG
CCACCAACGGCCTCGAGGGCCTCAAGCGCATGCGCGAACGCGTCTACTCA
GCCGTCCTGATCGAGTTCAATGTCAATGTTATGGACGCTCTGCAGGTGCT
GCTGGTGGATAGCCGGCCCAGCACCCACCGCACGGGCACGGAGGTGCTCC
AGCGCGGCCTGTTTCAAGTGCGCCACGCCACCAACGGCCTCGAGGGCCTC
AAGCGCATGCGCGAACGCGTCTACTCAGCCGTCCTGATCGAGTTCAATGT
CAATGTTATGGACGCTCTGCAGGTGCTGCAAAAGTTCCGAGAATGGGAGG
CGTCGCCCGGCTCCGGTAGGAGCGGCGAGGCGGAAAAGCAGTTCATCTGC
GTAATGTTCGGGGGGGTGCCCGAGGAGGTGCTGCAAAAGTTCCGAGAATG
GGAGGCGTCGCCCGGCTCCGGTAGGAGCGGCGAGGCGGAAAAGCAGTTCA
TCTGCGTAATGTTCGGGGGGGTGCCCGAGGAGGTGGAGCTGAACACCACA
ATAAAGTCGGGGGCGGACGCGGTGTGGACGGACCCGCTCATCCCGCACGC
AGCGGATATCCTCATCATGCTGGACGACGAGAGGCTCTACCGGGCCGAGA
GGTGGAGCTGAACACCACAATAAAGTCGGGGGCGGACGCGGTGTGGACGG
ACCCGCTCATCCCGCACGCAGCGGATATCCTCATCATGCTGGACGACGAG
AGGCTCTACCGGGCCGAGAGGAGCTGGGCCGCGGCGCAGGGGCCGGGCCC
TCCACCACGGGAGCTGGGCCGCGGCGCAGGGGCCGGGCCCTCCACCACGG
back to top