mRNA_S-ischiensis_contig11.2057.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2057.1
Unique NamemRNA_S-ischiensis_contig11.2057.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2057.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:776498..779170 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size685
Cds size684
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2057.1prot_S-ischiensis_contig11.2057.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 776498..779170 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815577.051519-CDS-S-ischiensis_contig11:776497..7766161622815577.051519-CDS-S-ischiensis_contig11:776497..776616Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 776498..776616 +
1695739781.242554-CDS-S-ischiensis_contig11:776497..7766161695739781.242554-CDS-S-ischiensis_contig11:776497..776616Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 776498..776616 +
1622815577.06267-CDS-S-ischiensis_contig11:777112..7772091622815577.06267-CDS-S-ischiensis_contig11:777112..777209Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 777113..777209 +
1695739781.25372-CDS-S-ischiensis_contig11:777112..7772091695739781.25372-CDS-S-ischiensis_contig11:777112..777209Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 777113..777209 +
1622815577.0772405-CDS-S-ischiensis_contig11:778106..7782801622815577.0772405-CDS-S-ischiensis_contig11:778106..778280Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 778107..778280 +
1695739781.268981-CDS-S-ischiensis_contig11:778106..7782801695739781.268981-CDS-S-ischiensis_contig11:778106..778280Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 778107..778280 +
1622815577.0874088-CDS-S-ischiensis_contig11:778876..7791701622815577.0874088-CDS-S-ischiensis_contig11:778876..779170Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 778877..779170 +
1695739781.2768385-CDS-S-ischiensis_contig11:778876..7791701695739781.2768385-CDS-S-ischiensis_contig11:778876..779170Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 778877..779170 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2057.1

>prot_S-ischiensis_contig11.2057.1 ID=prot_S-ischiensis_contig11.2057.1|Name=mRNA_S-ischiensis_contig11.2057.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=228bp
AGGGDAAEGQGGSEEQGYGGQRSQAGTAVRDSVRASIQNRYAAEAIHLSE
EVRLLKSRIGVMKEQAALALRRREQELRERHCRDLAELKARLEARAQDER
ERATAAAQARRAEINNLRQQLSAERARCKQAGSKALTPTSPGCPNPHSPS
TAATAPAQLLSRPHSLPGSPERPVALLRAPAPGPGPHARLPPQRPPPSPM
ASPMLPPPPPPLPPPTPPPPPSLQPLCY
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mRNA from alignment at S-ischiensis_contig11:776498..779170+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2057.1 ID=mRNA_S-ischiensis_contig11.2057.1|Name=mRNA_S-ischiensis_contig11.2057.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2673bp|location=Sequence derived from alignment at S-ischiensis_contig11:776498..779170+ (Schizocladia ischiensis KU_0333)
GCGGGGGGGGGGGACGCCGCTGAAGGCCAGGGCGGTTCCGAGGAGCAGGG
GTACGGGGGGCAGCGCTCCCAGGCCGGCACGGCCGTGCGGGACAGCGTGA
GGGCTTCCATCCAGAACAGGTACTCGCACTTACTGCTTCGAAGTACTTCG
AAGTGCATACTGTACGGATGTTGCAGTACTTGCAAGGTAGACACGTGTCT
TGTTGTCGAGGGTTCTGCGCGGGATCTTTACGCGGGGCAATCAAGCCGCT
GGTTCGCACGCATTTCCTGGCCCAAGAGGCGCTGTGCATCTACTTCGAAG
TACAGTACTTTTGAAGTACTTCGAAGTGTTTACTTACAATGGCTCAGGTC
ATCAGGCCGATACTTAGGCTCTGTGCGTTTCCGGCGCACTTGTTGCACGG
TGCGTGCGAGAGGTGCGCGGTTGCAGTGGGTGTGTGGGCGGCAGTCCCTA
AAGAATGGGTTCCTCTGTTGCCTAGGACTTGTTAAGCTGCCTGGGGGGGC
AACAGGTTGACCAAAGACCGAGAAGAAAGAGCACCCCCCAAGCCATGCGC
CACATCGCACGTGTTGCATGCAGTACAGTTTACGCACAACCCCCCCCCCC
CTCATCTTGTTCCAGATATGCCGCAGAGGCCATCCACCTGTCGGAAGAGG
TGCGCTTGCTCAAGTCAAGGATAGGCGTGATGAAGGAGCAGGCGGCGTTA
GCGCTACGTCGGGTGAGCCACGAGCCTTGCGCTGCCGCTGCCGTGCAGTG
TGTGTGTGTGTGTGACGCGTGCTTTGTGGGTGTGTGCGTGCGTTCACATG
CGTGTGTGCTTCTGTGTGTTCACGCAACACGTGTGCTAGTGTGTCTGCTT
GCTGCATGTGTTTCTGTTTGTACGCGCTTCTGTGCCTGCGCGCGTGAAAT
GTGCGTGTGTGTGTGTGTGTGCACGTGTACGGGCATGCATGCATGCGTGC
ATGCATGCATTCATGCGTGCGTGAGTGCTTGTGCGCGCACGCGCTACGTG
CCCGCGTCCGCGTACTGGTTGACAGACATAATGGCATTTGTCTTTATATG
TGCGCCGACTCATAGCTGAAGTACTGTACACAAGTGACCTACATACTTGG
TACTGTAGCACTCGACGGCAGGACTCGGAAGTATCGGCTCGGAATAGTTG
TTACAAGTGCAGGACAGGACGTCCGGAAGCTTTCTTCAGGAAATAACCCG
CAGGCCTCTCGAAGCTTCGAGGCACGGGCTATGGAAGCACACAGTCCACG
ACTGACGCACAAGGCTCTACGGACACTTCGGTAGCATCTAGAAGTATTCG
CAGAGGGCACCGCGCCCACTGCTCAGTCCAACAATTTACCAGTTAACTTA
ACAAGTCGCGGGTAAAACCGAACCCCGATTGCTTTCCAAGGTGCACGTTG
AGGGCGTCAAGCTCACACGAGACTATCACTCAGTCTGTCACTGGTGCTTG
TGCCAATGCGCGCTCACATTGTTCTTGCCGTAGGCCGAAGACAGCCTGCC
ACACGCCCTTTGATGACTACGGAGCAGCCACCCAACCCTTCATGGGAGGC
GTGTCCCACTGAGCCCGCCGGCACGACCCTTCCTACCGGCCGCCACCCCT
CAATGGCAGCGAGAACAGGAATTGCGTGAGCGGCACTGCCGGGACCTGGC
CGAACTAAAAGCGAGGCTGGAAGCCAGAGCTCAGGACGAGCGTGAACGGG
CCACGGCCGCCGCACAGGCTCGCAGGGCTGAGATAAACAACCTGCGGCAG
CAGCTGTCTGCGGAGCGGGCCCGCTGCAAGCAGGTTGGTCCTTCCCTACT
AAACCCCCCGTCGCGTGGCGTGGGGTGGCTGACCCGGGCGTCATCGCCTC
TGTTTGCCGTCGTTGACATGCTAGGGGTGCTTTCGTGCGTCTCATGCCGC
GGCGCCAGTACCTGGCCCTCGCGTTCAGTTTATCACTGCAGTGCCAACTC
TAGATGTCCACTCCGTTTGCCCGTATCTCCCCGCCCCCACGCCCCTTGCA
GTGCACACCTCTTTTCCCGTTTTCCGTGCTGTGAATTGCCGGAGGCGTGG
GCCTCTCACCCCACAACCATCGCGCCGCTTCGCCGACGGACAAATGAGTC
ACGGCCCTGACCCACGGGGACACCTAAGGGCGGAGAACTTGTAGAAGTTC
TTCGAAGCACTCGAGTACAGACACCCATGCACTGTGCGCCTGCTTTGTTC
AGGCAGTTTCACACCTACAGTTACATCTGTACGGTATGTGCTCAGGTTAA
CCACACTGATCGTTGCGCCGGGGAATGATATTACTTCGAAGTACAATCCA
GCGCCCATGCTGTACCTCCTGCTCGTTCCGCGCACGCCTCCCCCGGCTCC
AACACCACCAACTCCTGGCCTGGCGGCAGGCCGGGTCCAAGGCCCTGACC
CCGACGTCCCCGGGGTGCCCAAACCCCCACTCACCATCGACCGCGGCCAC
GGCGCCAGCGCAGCTGCTCTCTCGTCCACACTCGCTTCCCGGGTCCCCCG
AGCGGCCAGTGGCGCTGCTGCGCGCCCCCGCGCCTGGGCCGGGCCCACAC
GCACGCCTTCCGCCTCAGAGACCCCCACCGTCACCGATGGCGTCCCCGAT
GCTGCCGCCTCCACCCCCGCCGCTGCCGCCGCCGACACCGCCGCCACCAC
CATCGCTGCAACCGCTGTGCTAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:776498..779170+

>mRNA_S-ischiensis_contig11.2057.1 ID=mRNA_S-ischiensis_contig11.2057.1|Name=mRNA_S-ischiensis_contig11.2057.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1368bp|location=Sequence derived from alignment at S-ischiensis_contig11:776498..779170+ (Schizocladia ischiensis KU_0333)
GCGGGGGGGGGGGACGCCGCTGAAGGCCAGGGCGGTTCCGAGGAGCAGGG
GTACGGGGGGCAGCGCTCCCAGGCCGGCACGGCCGTGCGGGACAGCGTGA
GGGCTTCCATCCAGAACAGGCGGGGGGGGGGGACGCCGCTGAAGGCCAGG
GCGGTTCCGAGGAGCAGGGGTACGGGGGGCAGCGCTCCCAGGCCGGCACG
GCCGTGCGGGACAGCGTGAGGGCTTCCATCCAGAACAGATATGCCGCAGA
GGCCATCCACCTGTCGGAAGAGGTGCGCTTGCTCAAGTCAAGGATAGGCG
TGATGAAGGAGCAGGCGGCGTTAGCGCTACGTCGGATATGCCGCAGAGGC
CATCCACCTGTCGGAAGAGGTGCGCTTGCTCAAGTCAAGGATAGGCGTGA
TGAAGGAGCAGGCGGCGTTAGCGCTACGTCGGCGAGAACAGGAATTGCGT
GAGCGGCACTGCCGGGACCTGGCCGAACTAAAAGCGAGGCTGGAAGCCAG
AGCTCAGGACGAGCGTGAACGGGCCACGGCCGCCGCACAGGCTCGCAGGG
CTGAGATAAACAACCTGCGGCAGCAGCTGTCTGCGGAGCGGGCCCGCTGC
AAGCAGCGAGAACAGGAATTGCGTGAGCGGCACTGCCGGGACCTGGCCGA
ACTAAAAGCGAGGCTGGAAGCCAGAGCTCAGGACGAGCGTGAACGGGCCA
CGGCCGCCGCACAGGCTCGCAGGGCTGAGATAAACAACCTGCGGCAGCAG
CTGTCTGCGGAGCGGGCCCGCTGCAAGCAGGCCGGGTCCAAGGCCCTGAC
CCCGACGTCCCCGGGGTGCCCAAACCCCCACTCACCATCGACCGCGGCCA
CGGCGCCAGCGCAGCTGCTCTCTCGTCCACACTCGCTTCCCGGGTCCCCC
GAGCGGCCAGTGGCGCTGCTGCGCGCCCCCGCGCCTGGGCCGGGCCCACA
CGCACGCCTTCCGCCTCAGAGACCCCCACCGTCACCGATGGCGTCCCCGA
TGCTGCCGCCTCCACCCCCGCCGCTGCCGCCGCCGACACCGCCGCCACCA
CCATCGCTGCAACCGCTGTGCTACGCCGGGTCCAAGGCCCTGACCCCGAC
GTCCCCGGGGTGCCCAAACCCCCACTCACCATCGACCGCGGCCACGGCGC
CAGCGCAGCTGCTCTCTCGTCCACACTCGCTTCCCGGGTCCCCCGAGCGG
CCAGTGGCGCTGCTGCGCGCCCCCGCGCCTGGGCCGGGCCCACACGCACG
CCTTCCGCCTCAGAGACCCCCACCGTCACCGATGGCGTCCCCGATGCTGC
CGCCTCCACCCCCGCCGCTGCCGCCGCCGACACCGCCGCCACCACCATCG
CTGCAACCGCTGTGCTAC
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