mRNA_S-ischiensis_contig11.2038.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2038.1
Unique NamemRNA_S-ischiensis_contig11.2038.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2038.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:593854..595824 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size237
Cds size234
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2038.1prot_S-ischiensis_contig11.2038.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 593854..595823 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815576.7218637-CDS-S-ischiensis_contig11:593853..5939821622815576.7218637-CDS-S-ischiensis_contig11:593853..593982Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 593854..593982 +
1695739781.0260043-CDS-S-ischiensis_contig11:593853..5939821695739781.0260043-CDS-S-ischiensis_contig11:593853..593982Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 593854..593982 +
1622815576.7327378-CDS-S-ischiensis_contig11:594437..5945061622815576.7327378-CDS-S-ischiensis_contig11:594437..594506Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 594438..594506 +
1695739781.035546-CDS-S-ischiensis_contig11:594437..5945061695739781.035546-CDS-S-ischiensis_contig11:594437..594506Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 594438..594506 +
1622815576.7450993-CDS-S-ischiensis_contig11:595787..5958231622815576.7450993-CDS-S-ischiensis_contig11:595787..595823Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 595788..595823 +
1695739781.0470037-CDS-S-ischiensis_contig11:595787..5958231695739781.0470037-CDS-S-ischiensis_contig11:595787..595823Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 595788..595823 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2038.1

>prot_S-ischiensis_contig11.2038.1 ID=prot_S-ischiensis_contig11.2038.1|Name=mRNA_S-ischiensis_contig11.2038.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=78bp
HKQLERGQQVEEPSALSGLECRRSDTMAGKRGKKKKSHSSGKKSTGSGVG
GAVAATEADSSKSALQGQKRSTLTDDER
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mRNA from alignment at S-ischiensis_contig11:593854..595824+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2038.1 ID=mRNA_S-ischiensis_contig11.2038.1|Name=mRNA_S-ischiensis_contig11.2038.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1971bp|location=Sequence derived from alignment at S-ischiensis_contig11:593854..595824+ (Schizocladia ischiensis KU_0333)
CACAAGCAGCTCGAGAGAGGCCAACAAGTAGAGGAGCCGAGCGCCCTCTC
CGGGCTAGAGTGCAGGCGGTCGGACACGATGGCTGGAAAGCGGGGGAAGA
AGAAGAAGTCTCACAGCTCCGGCAAGAAGGCAAGCCGCTTCGGAGGGGGG
AGTTCAACTGGCGAGACCGTGGTGCATGTTTTGATGGCGTGGAAGCGATT
CGACAACGCGCCTTGCGTCGCTGGGTCGCAAGACCATGGTTCATGCTTTG
CTGATGATGACTTCTAGCGATTCAGCAAGGGGAGACCTTCGCATGTGAAG
CGAGTCGACGGCACGCTGTGCTTGGCGAGGTGCTACTACTGTAGTGTCCA
CAGTCGCCGCCGCGTGCGCGTGGCCGGTTCTGTGTCGGCACCAATTGACA
GGGGCCGAGTGTATGGGACTGGGACGTAGCGTCTCAGGAACGTGACAGCC
AACTCGTGCACGCCTGTGTTGTACGCCGCACTCACTGAGGACCCATTGTC
CAGCCCGGTGGTTAGTCTGACATTCCACACGTAGCGCTCCCCCGCCAACT
CATGCGGACACACTGCCCCCACTTCCGCCAACAGAGTACTGGGAGCGGGG
TTGGCGGCGCTGTGGCTGCCACAGAGGCAGACTCGTCGAAGAGCGCGCTG
CAGGTGCGGTTGGCAGCAGACCTCAGTCCTATAGAGACACAGTACAACAT
TGTCTGACATATTTTGTGTTTATTTAAAGTATTCTTTTTTCTCAAGAGAA
GTACTGATAGTAGTAGGCGCAGTAGCAACGGGAAAAACGCAGGACGAGGT
GCAGGACACGTCACCAAAGTCCTCAGTAGATAGGAGTAGTTCAGTACTGT
ACTGGTGGTATAGTACTGCAGTACTGTACAGTGCTTTCTTGATTTAACCT
CACTAGGCTTACCAGAGTCCGATCTAGAGCCTGCTACATGCAGAGGGGTA
CTCCTACATCTGCAGGTACTTCAAGCTACTGTACTGTACGAGTAGTAGAT
ATGAAGTACTGTGGTCAATTACTGTAGTGGTCTTGGGACTACTTGTACAG
CAAGCACCACGTGAGTGCATGCGCTCAGTGGTCCATTACTTTGAAGTACT
TGTCAGAAGTACGTTGCCGCTCTGAAGTACCGTGTGTATTGTAGTGCTGT
ACTCGTGCACTATACAGTAGCAGGCCTGCTCCGTCTTGGCCGAGGCGCTA
TAGGGGGTCAATGGTCTCAGGACTGCGGCAAGCACAGCGTGAGTACCTAC
TTGAGTACCTACTTGCATACTTCGAAGTATAAACTGTGAATCGTACAGTA
GTTACCTGCTGCTTGTAGGTAGACCTATGCTGAAGGTGGTCGATGGTTTC
TGGGCCGCGGCAAGCAGTAACTTTAGTGTACACTTCCAAGCGGTGTATGT
ATGAGTATTGCAGAGTGCTACATGCACGACACTTGTGCTCTGAAGTATAT
AGAGAACTGCAGTGCAATAGTGCTCGAGGAGGAAATATCGCGTACTTACA
TGTACACGCCCGCTCGAACCAAACTTGGAAATGCCCGCAATACCGTCTAC
TGTTTCTGATCGCCGCATGTTTCCAGTCGTGGGTAAGTTATGACACCCGC
CGGGGCCGAAACTCTGCCAGTGGCAGGCGTTTCCTTACCATGGAGAAGAG
AACGCCCGCCCACCCCAACCCCGCTCACTCTCCCACCCTGCCTGCCTGCC
TTCCTTCCTGCCTGCCTGCGTGCCTGGCTGCCTGCCTGCGTGCCTGCCTG
CCTGCCTGCCTGCGTGCCCGCCTGCCTGCCTGCCCGCGTGCCTGCCTGCC
TACCTACCGGCCCGCCCGTTTGCCTACTACCGCGCTGTGTCGGTCCCTCT
GTCCGGGTATGTTTCTGTGCGGGCACCCTACCATACATGTCTTGGGGCAT
CCCTACACGTCCCTCCACCCCAACTCTGGGGCAGGGCCAAAAACGGAGCA
CGCTGACCGACGATGAGAGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:593854..595824+

>mRNA_S-ischiensis_contig11.2038.1 ID=mRNA_S-ischiensis_contig11.2038.1|Name=mRNA_S-ischiensis_contig11.2038.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=468bp|location=Sequence derived from alignment at S-ischiensis_contig11:593854..595824+ (Schizocladia ischiensis KU_0333)
CACAAGCAGCTCGAGAGAGGCCAACAAGTAGAGGAGCCGAGCGCCCTCTC
CGGGCTAGAGTGCAGGCGGTCGGACACGATGGCTGGAAAGCGGGGGAAGA
AGAAGAAGTCTCACAGCTCCGGCAAGAAGCACAAGCAGCTCGAGAGAGGC
CAACAAGTAGAGGAGCCGAGCGCCCTCTCCGGGCTAGAGTGCAGGCGGTC
GGACACGATGGCTGGAAAGCGGGGGAAGAAGAAGAAGTCTCACAGCTCCG
GCAAGAAGAGTACTGGGAGCGGGGTTGGCGGCGCTGTGGCTGCCACAGAG
GCAGACTCGTCGAAGAGCGCGCTGCAGAGTACTGGGAGCGGGGTTGGCGG
CGCTGTGGCTGCCACAGAGGCAGACTCGTCGAAGAGCGCGCTGCAGGGCC
AAAAACGGAGCACGCTGACCGACGATGAGAGGGGCCAAAAACGGAGCACG
CTGACCGACGATGAGAGG
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