mRNA_S-ischiensis_contig11.2037.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2037.1
Unique NamemRNA_S-ischiensis_contig11.2037.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig11.2037.1 vs. uniprot
Match: UPI0014255611 (LOW QUALITY PROTEIN: exportin-6-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014255611)

HSP 1 Score: 107 bits (266), Expect = 5.650e-22
Identity = 63/196 (32.14%), Postives = 98/196 (50.00%), Query Frame = 3
Query:  189 LAAALGEFYGPQTPTERKRQIEARLREFKASPNALGACLEILQQADAEGQSQQGAYLMYFAGSTLEEVIQWRWDTIAPEERVRVRRFLFEYLAARHASLPRWVSTKLGKAFVDVGKTSWPHEDPSFLTELQNLARREGTTVLGLSLLSLVGEEFV--REDLPMPTARKAELRAALQASLPEVVSLLTETIGSAYER 770
            L   + EF+ P T  +RKR+IE  L  F A   +   C   L  +       Q  Y+M +A S  E VI  +W  I  E+++++R  L ++L + H ++P  +  KL K  V + +  WPH  P F + +  L ++  T  LGL LL    EE    REDL    +RK EL   LQ  +P V++++T  + S  ++
Sbjct:   11 LEGLMNEFFAPTTTNQRKREIEELLNNFSAQTGSWRHCFYFLTHS-------QNEYVMMYALSVFETVINRQWIGIVGEDKIQIRNGLSKFLLSHHKAVPSSIRNKLIKVIVCIARLDWPHFYPDFFSNILQLIQQSQTASLGLMLLHTTSEELAAPREDLS--ASRKEELNRLLQDQIPTVLNIITHILESILDK 197          
BLAST of mRNA_S-ischiensis_contig11.2037.1 vs. uniprot
Match: UPI00077F822D (exportin-6 isoform X1 n=2 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=UPI00077F822D)

HSP 1 Score: 106 bits (265), Expect = 7.620e-22
Identity = 66/204 (32.35%), Postives = 95/204 (46.57%), Query Frame = 3
Query:  171 TMSYHELAAALG----EFYGPQTPTERKRQIEARLREFKASPNALGACLEILQQADAEGQSQQGAYLMYFAGSTLEEVIQWRWDTIAPEERVRVRRFLFEYLAARHASLPRWVSTKLGKAFVDVGKTSWPHEDPSFLTELQNLARREGTTVLGLSLLSLVGEEFVREDLPMPTARKAELRAALQASLPEVVSLLTETIGSAYER 770
            TMS  EL  +L     EFY   T  ERKRQIE  L  FK  P     CL  L     E       ++M +  + LE VI   W  +   ++  +R  L  ++   H  +P +++ KLGK  VD+G+  WPH  P F   +  LA+   T  LGL L+    EEF      +   RKAEL   +   +P V+++L   + +  E+
Sbjct:    5 TMSSEELLTSLEVLIHEFYNISTTNERKRQIEEILENFKNQPECWKHCLSFLSNTSNE-------FVMMYCLTVLEYVINKLWIRMPGPDKAELRTKLNSFMINHHLKVPNYITNKLGKLIVDIGRHDWPHFYPDFYMNIHQLAQSSETAPLGLMLIITSFEEFTSPREDVAVTRKAELHRLMLDQVPVVLNILAGHLDAVLEK 201          
BLAST of mRNA_S-ischiensis_contig11.2037.1 vs. uniprot
Match: A0A6A3JBF6_9STRA (Importin N-terminal domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3JBF6_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.030e-21
Identity = 77/242 (31.82%), Postives = 125/242 (51.65%), Query Frame = 3
Query:  186 ELAAALGEFYGPQTPTERKRQIEARLREFKASPNALGACLEILQQADAEGQSQQGAYLMYFAGSTLEEVIQWRWDTIAPEERVRVRRFLFEYLAARHASLPR--WVSTKLGKAFVDVGKTSWPHED---PSFLTELQNLARREGTTVLGLSLLSLVGEEFVREDLPMPTARKAELRAALQASLPEVVSLLTETI-GSAYERAAAPVAPADPQAQAAREEIQAASRCLLN-ILSWAPLGDYLT 890
            E+  AL     P TP   K Q+EA+L  FK +   L ACL +L Q     Q+    Y ++FA +TLEE +  RW      E++ +R+F+++YL A  A   +  +V  KL K   D+ +  W   D   P F  +++ L   E +   GL LLS+V EEF R+D  +    K + +  L A LP V++LL   + G ++    +    AD QA A ++ +   +   LN +++WAP+ ++++
Sbjct:   16 EVEGALCRLLDPATPAADKLQLEAQLTRFKET---LAACLPVLFQLL---QTSSSEYALWFAATTLEEYVAQRWAHFPVTEQLHLRQFVWDYLLASPAGGAQIAFVQRKLRKVLADIARVQWTVADARWPDFFVQVEALVADERSRERGLELLSVVVEEFGRDDALVLATVKRQAKNRLTAQLPGVLALLANVLKGCSHVLQTS----ADAQAVADQDRVANVALTTLNSLITWAPVAEHVS 247          
BLAST of mRNA_S-ischiensis_contig11.2037.1 vs. uniprot
Match: H2Y846_CIOSA (Importin N-terminal domain-containing protein n=2 Tax=Ciona savignyi TaxID=51511 RepID=H2Y846_CIOSA)

HSP 1 Score: 105 bits (262), Expect = 1.900e-21
Identity = 82/287 (28.57%), Postives = 121/287 (42.16%), Query Frame = 3
Query:  189 LAAALGEFYGPQTPTERKRQIEARLREFKASPNALGACLEILQQADAEGQSQQGAYLMYFAGSTLEEVIQWRWDTIAPEERVRVRRFLFEYLAARHASLPRWVSTKLGKAFVDVGKTSWPHEDPSFLTELQNLARREG---TTVLGLSLLSLVGEEFVREDLPMPTARKAELRAALQASLPEVVSLLTETIGSAYER----------AAAP--------------VAPADPQAQAAREEI--------QAASRCLLNILSWAPLGDYLTLRLFQANFSVIEAAVRGA 944
            L   + EF+ P T  +RKR+IE +L +F     A   CLEI  + + E       Y+M +  S LE ++   W       +  +RR L   L  +H  +P +++ KL K  VD+G++ WP   P F T L +LA   G   T  LGL  L +  EE       +   RK ELR  L   +P++++++TE++   +E           A  P              VA  D + Q A   I        + A  CL  + SW PL   +T  L    F      V  A
Sbjct:   11 LERIMTEFFHPSTSNKRKREIEEQLNKFGNQNGAWKHCLEIFTKTNNE-------YVMMYCLSVLENLVNKMWLGCDANSKSEIRRNLNHILMLQHKKVPMFITNKLIKVIVDIGRSDWPMFYPDFFTGLLHLASSSGGNDTRALGLVALRIASEELASPREDVSGQRKEELRKLLLQQVPDMIAIITESLRVEWESNFMQLNQSSMATPPPSPGSGESNLFDLFVAQGDARPQIANVTIPPHSLNIMKHALECLCQLFSWIPLSSSITPDLLSVVFKYARLGVSAA 290          
BLAST of mRNA_S-ischiensis_contig11.2037.1 vs. uniprot
Match: A0A2P4YSN3_9STRA (Importin N-terminal domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YSN3_9STRA)

HSP 1 Score: 103 bits (257), Expect = 4.030e-21
Identity = 76/250 (30.40%), Postives = 124/250 (49.60%), Query Frame = 3
Query:  186 ELAAALGEFYGPQTPTERKRQIEARLREFKASPNALGACLEILQQADAEGQSQQGAYLMYFAGSTLEEVIQWRWDTIAPEERVRVRRFLFEYLAARHAS---LPRWVSTKLGKAFVDVGKTSWPHED------------PSFLTELQNLARREGTTVLGLSLLSLVGEEFVREDLPMPTARKAELRAALQASLPEVVSLLTETI-GSAYERAAAPVAPADPQAQAAREEIQAASRCLLNILSWAPLGDYL 887
            E+  AL     P TP   K Q+E +L  FK +P    ACL +L Q  +  Q++   Y ++FA +TLEE +  +W      E++++R+F+++YL A  AS      +V  KL K   D+ K  W  E+            P F+++++ L   E T   GL LLS+V EEF R+D  +    K + +  L A LP V++LL   + G ++      +     Q + A      A   L +++SWAP+ +++
Sbjct:    4 EVEGALRRLLDPSTPPNDKLQLEEQLTRFKETP---AACLPVLFQLLSTSQNE---YALWFAATTLEEYVAKKWVHFPISEQLQIRQFVWDYLLASAASGGAQIAFVRRKLRKVLADIAKVQWRGEETASPRPGPDARWPDFMSQVEALVVEERTRESGLELLSVVVEEFGRDDAMVLATVKRQAKTRLIAQLPSVLALLANILKGCSHVLQVGELQGIGEQDRVAN----VALTTLNSLISWAPVAEHV 243          
BLAST of mRNA_S-ischiensis_contig11.2037.1 vs. uniprot
Match: A0A484DU54_BRELC (Importin N-terminal domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DU54_BRELC)

HSP 1 Score: 104 bits (259), Expect = 4.640e-21
Identity = 75/244 (30.74%), Postives = 124/244 (50.82%), Query Frame = 3
Query:  186 ELAAALGEFYGPQTPTERKRQIEARLREFKASPNALGACLEILQQADAEGQSQQGAYLMYFAGSTLEEVIQWRWDTIAPEERVRVRRFLFEYL---AARHASLPRWVSTKLGKAFVDVGKTSWPHED------PSFLTELQNLARREGTTVLGLSLLSLVGEEFVREDLPMPTARKAELRAALQASLPEVVSLLTETIGSAYERAAAPVAPADPQAQAAREEIQAASRCLLN-ILSWAPLGDYL 887
            EL  AL     P TP+  K+Q+E +L  FK +P    ACL +L Q  +  Q++   Y ++FA +TLEE +  RW  ++  E+++VR+F + YL   A    S   +V  K+ K   D+ +  WP  +      P F+++++ L   E T   GL LLS+V EEF R+D  +    K   +  L A LP ++SLL   +    +     +   + Q  A +++I  A+   LN   +WA + +++
Sbjct:    4 ELEGALRRVLDPTTPSGEKQQLEEQLNRFKETP---AACLPVLFQILSTSQNE---YALWFAATTLEEYVAKRWIHLSASEQLQVRKFAWSYLISNAITAVSPLAFVRRKVRKVVADIARIQWPGVEQGESKWPDFMSQVEALIISEPTRESGLKLLSVVVEEFGRDDALVFATVKRRAKLRLSAELPILLSLLANVLKECNQLM---LTSGENQVIAQQDQIANAALATLNHFATWASVAEHV 238          
BLAST of mRNA_S-ischiensis_contig11.2037.1 vs. uniprot
Match: A0A3R7MLM3_9STRA (Importin N-terminal domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7MLM3_9STRA)

HSP 1 Score: 102 bits (253), Expect = 2.840e-20
Identity = 76/258 (29.46%), Postives = 124/258 (48.06%), Query Frame = 3
Query:  186 ELAAALGEFYGPQTPTERKRQIEARLREFKASPNALGACLEILQQADAEGQSQQGAYLMYFAGSTLEEVIQWRWDTIAPEERVRVRRFLFEYLAARHASLPR---------WVSTKLGKAFVDVGKTSWPHED-------------PSFLTELQNLARREGTTVLGLSLLSLVGEEFVREDLPMPTARKAELRAALQASLPEVVSLLTETI-GSAYERAAAPVAPADPQAQAAREEIQAASRCLLN-ILSWAPLGDYL 887
            E+ AAL     P TP   K Q+E +L  FK +P    ACL +L Q     +++   Y ++FA +TLEE +  +W      E++ VR+F+++YL A   S            +V  KL K   D+ +  W   D             P F+++++ L   E T   GL LLS+V EEF RED  +    K + +  L A LP +++LL+  + G  +   +A     +PQ    ++     +   LN ++SWAP+ +++
Sbjct:   16 EVEAALCRLLDPATPANDKLQLEEQLTRFKETP---AACLPVLFQLLGTSRNE---YALWFAATTLEEYVAKKWPQFPASEQLHVRQFVWDYLLAAATSPDTGQTGGAQVAFVRRKLRKVLADIARVQWRTADVASPRPGAMGARWPDFMSQIEALVVEERTRESGLELLSVVVEEFGREDAMVLATIKRQAKGQLSAQLPSLLALLSNILHGCTHSLRSAN----EPQTIVNQDRCAHIALTTLNSLVSWAPVAEHV 263          
BLAST of mRNA_S-ischiensis_contig11.2037.1 vs. uniprot
Match: A0A7M7NQK3_STRPU (Importin N-terminal domain-containing protein n=3 Tax=Echinacea TaxID=7674 RepID=A0A7M7NQK3_STRPU)

HSP 1 Score: 100 bits (250), Expect = 6.960e-20
Identity = 65/210 (30.95%), Postives = 98/210 (46.67%), Query Frame = 3
Query:  177 SYHELAAALGEFYGPQTPTERKRQIEARLREFKASPNALGACLEILQQADAEGQSQQGAYLMYFAGSTLEEVIQWRWDTIAPEERVRVRRFLFEYLAARHASLPRWVSTKLGKAFVDVGKTSWPHEDPSFLTELQNLARREGTTVLGLSLLSLVGEEFV--REDLPMPTARKAELRAALQASLPEVVSLLTETIGSAYERAAAPVAPADP 800
            S   L   + EF+   T  +RKR IE  L  F A   +   C   L     E       Y+M +A S  E VI  +W  + P++R+ +R  L ++L  +H  +P ++  KL K  V + +  WPH  P F   +  L ++  T  LGL +L    EE    REDL    ARK E++  L   +P V SL+T  + +  ++  + V  A P
Sbjct:    7 SLRTLEGLMSEFFAISTTNQRKRDIEELLNNFSAQSGSWRHCFYFLMHTRNE-------YVMMYALSVFENVINRQWIGLPPQDRMEIRSGLTKFLLGQHKVVPNYIRNKLIKVIVCIARLDWPHFYPDFFPSIMQLIQQPQTCSLGLIMLQTTSEELASPREDLS--AARKEEVQRLLLDQVPTVFSLITHILETILDKHRSLVTTATP 207          
BLAST of mRNA_S-ischiensis_contig11.2037.1 vs. uniprot
Match: A0A662WYF3_9STRA (Importin N-terminal domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WYF3_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 5.660e-19
Identity = 73/262 (27.86%), Postives = 124/262 (47.33%), Query Frame = 3
Query:  186 ELAAALGEFYGPQTPTERKRQIEARLREFKASPNALGACLEILQQADAEGQSQQGAYLMYFAGSTLEEVIQWRWDTIAPEERVRVRRFLFEYLAARHASLP---------RWVSTKLGKAFVDVGKTSWPHED---------------PSFLTELQNLARREGTTVLGLSLLSLVGEEFVREDLPMPTARKAELRAALQASLPEVVSLLTETIGSAYERAAAPVAPADPQAQAAREE---IQAASRCLLNILSWAPLGDYLT 890
            E+  AL     P TP   K Q+E +L  FK +P    ACL +L Q     +++   Y ++FA +TLEE +  +W      E+++VR+F+++YL A   S            +V  KL K   D+ +  W  +D               P FL++++ L   +     GL L+S+V EEF R+D  +  + K + +A L A LP +++LL+  +     R  +       + Q   ++    Q A   L N+++WAP+ + +T
Sbjct:   16 EVEEALRRLLDPNTPATEKFQLEQQLTRFKEAP---AACLPVLFQLLGTSRNE---YALWFAATTLEEYVATKWPQFPAVEQLQVRQFVWDYLLAATTSSGGSPGAGGQIAFVRRKLRKVLADIARVQWRSDDAAGVASPRGGSGARWPEFLSQIEALVMEDRMRESGLELMSVVVEEFGRDDALVLASIKRQAKARLTAQLPSLLTLLSNIL-----RGCSHNLQNGTELQVIVDQDRCAQIALTTLNNLITWAPVAEQMT 266          
BLAST of mRNA_S-ischiensis_contig11.2037.1 vs. uniprot
Match: H3GNB7_PHYRM (Importin N-terminal domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GNB7_PHYRM)

HSP 1 Score: 98.2 bits (243), Expect = 5.680e-19
Identity = 68/245 (27.76%), Postives = 122/245 (49.80%), Query Frame = 3
Query:  186 ELAAALGEFYGPQTPTERKRQIEARLREFKASPNALGACLEILQQADAEGQSQQGAYLMYFAGSTLEEVIQWRWDTIAPEERVRVRRFLFEYLAARHASLP----RWVSTKLGKAFVDVGKTSWPHED-----PSFLTELQNLARREGTTVLGLSLLSLVGEEFVREDLPMPTARKAELRAALQASLPEVVSLLTETIGSAYERAAAPVAPADPQAQAAREEIQAASRCLLN-ILSWAPLGDYLT 890
            E+  AL     P T    K Q+E +L  FK +P    ACL +L Q  +  Q++   Y ++FA +TLEE +  +W      E++++R+F++++L A  A+       +V  KL K   D+ K  W  +      P FL++++ L   E +   GL LLS+V +EF R+D  +    K + +A L A LP +++LL   +          +   +      ++ +   +   LN +++WAP+ D+++
Sbjct:   10 EVEGALRRLLDPSTSAADKLQLEDQLTRFKETP---AACLPVLFQLLSTSQNE---YALWFAATTLEEYVANKWVHFPSAEQLQIRQFVWDFLLANSANHSGAQIAFVRRKLRKVLADIAKLQWQSDTTNAPWPDFLSQVEALVMDERSRESGLELLSVVVDEFGRDDALVLATIKRQAKARLAAQLPNLLALLANVLKGCSHL----LLTGEAHTVVEQDRVANVALTTLNSLVAWAPVADHMS 244          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2037.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
UPI00142556115.650e-2232.14LOW QUALITY PROTEIN: exportin-6-like n=1 Tax=Annei... [more]
UPI00077F822D7.620e-2232.35exportin-6 isoform X1 n=2 Tax=Parasteatoda tepidar... [more]
A0A6A3JBF6_9STRA1.030e-2131.82Importin N-terminal domain-containing protein n=5 ... [more]
H2Y846_CIOSA1.900e-2128.57Importin N-terminal domain-containing protein n=2 ... [more]
A0A2P4YSN3_9STRA4.030e-2130.40Importin N-terminal domain-containing protein n=1 ... [more]
A0A484DU54_BRELC4.640e-2130.74Importin N-terminal domain-containing protein n=1 ... [more]
A0A3R7MLM3_9STRA2.840e-2029.46Importin N-terminal domain-containing protein n=3 ... [more]
A0A7M7NQK3_STRPU6.960e-2030.95Importin N-terminal domain-containing protein n=3 ... [more]
A0A662WYF3_9STRA5.660e-1927.86Importin N-terminal domain-containing protein n=2 ... [more]
H3GNB7_PHYRM5.680e-1927.76Importin N-terminal domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:589657..593794 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score127.5
Seed ortholog evalue9.1e-27
Seed eggNOG ortholog6500.XP_005096517.1
Preferred nameXPO6
KEGG koko:K15001
GOsGO:0003008,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005886,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007610,GO:0007611,GO:0007613,GO:0007614,GO:0007626,GO:0007628,GO:0007629,GO:0008104,GO:0008150,GO:0008344,GO:0008565,GO:0015031,GO:0015833,GO:0016020,GO:0016319,GO:0030534,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048036,GO:0048513,GO:0048731,GO:0048856,GO:0050877,GO:0050890,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060322,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0071944,GO:0090659
EggNOG free text desc.Exportin 6
EggNOG OGs39RM0@33154,3BDGE@33208,3CXNJ@33213,COG5101@1,KOG2020@2759
COG Functional cat.UY
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00199,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionImportin-beta, N-terminal domain
Ec32 orthologEc-15_003820.1
Exons6
Model size947
Cds size774
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815591.2819939-CDS-S-ischiensis_contig11:589656..5897621622815591.2819939-CDS-S-ischiensis_contig11:589656..589762Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 589657..589762 -
1695739789.668773-CDS-S-ischiensis_contig11:589656..5897621695739789.668773-CDS-S-ischiensis_contig11:589656..589762Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 589657..589762 -
1622815591.296222-CDS-S-ischiensis_contig11:591078..5911731622815591.296222-CDS-S-ischiensis_contig11:591078..591173Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 591079..591173 -
1695739789.6799266-CDS-S-ischiensis_contig11:591078..5911731695739789.6799266-CDS-S-ischiensis_contig11:591078..591173Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 591079..591173 -
1622815591.3088121-CDS-S-ischiensis_contig11:591954..5921081622815591.3088121-CDS-S-ischiensis_contig11:591954..592108Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 591955..592108 -
1695739789.688945-CDS-S-ischiensis_contig11:591954..5921081695739789.688945-CDS-S-ischiensis_contig11:591954..592108Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 591955..592108 -
1622815591.3241081-CDS-S-ischiensis_contig11:592776..5929431622815591.3241081-CDS-S-ischiensis_contig11:592776..592943Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 592777..592943 -
1695739789.6990733-CDS-S-ischiensis_contig11:592776..5929431695739789.6990733-CDS-S-ischiensis_contig11:592776..592943Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 592777..592943 -
1622815591.339248-CDS-S-ischiensis_contig11:593256..5933491622815591.339248-CDS-S-ischiensis_contig11:593256..593349Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 593257..593349 -
1695739789.7155454-CDS-S-ischiensis_contig11:593256..5933491695739789.7155454-CDS-S-ischiensis_contig11:593256..593349Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 593257..593349 -
1622815591.3562458-CDS-S-ischiensis_contig11:593462..5936211622815591.3562458-CDS-S-ischiensis_contig11:593462..593621Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 593463..593621 -
1695739789.7268834-CDS-S-ischiensis_contig11:593462..5936211695739789.7268834-CDS-S-ischiensis_contig11:593462..593621Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 593463..593621 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815591.3695233-UTR-S-ischiensis_contig11:593621..5937941622815591.3695233-UTR-S-ischiensis_contig11:593621..593794Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 593622..593794 -
1695739789.7355092-UTR-S-ischiensis_contig11:593621..5937941695739789.7355092-UTR-S-ischiensis_contig11:593621..593794Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 593622..593794 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2037.1prot_S-ischiensis_contig11.2037.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 589657..593621 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2037.1

>prot_S-ischiensis_contig11.2037.1 ID=prot_S-ischiensis_contig11.2037.1|Name=mRNA_S-ischiensis_contig11.2037.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=258bp
MSYHELAAALGEFYGPQTPTERKRQIEARLREFKASPNALGACLEILQQA
DAEGQSQQGAYLMYFAGSTLEEVIQWRWDTIAPEERVRVRRFLFEYLAAR
HASLPRWVSTKLGKAFVDVGKTSWPHEDPSFLTELQNLARREGTTVLGLS
LLSLVGEEFVREDLPMPTARKAELRAALQASLPEVVSLLTETIGSAYERA
AAPVAPADPQAQAAREEIQAASRCLLNILSWAPLGDYLTLRLFQANFSVI
EAAVRGAG
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mRNA from alignment at S-ischiensis_contig11:589657..593794-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2037.1 ID=mRNA_S-ischiensis_contig11.2037.1|Name=mRNA_S-ischiensis_contig11.2037.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4138bp|location=Sequence derived from alignment at S-ischiensis_contig11:589657..593794- (Schizocladia ischiensis KU_0333)
CTGCAGCTGTTGCAAGCAACCCAAATCTGGGAGGGGAGTGAATATGGCCC TCTCGCAGCCCCAAACGGATAGTTGTTGACTCGCTTGACCCTGCGGGACC CTTGTTTGTTAAGGGCAGAGGTACCGAGGAGGCTTGCAGCGATAAAGCTG CAGCAAAATTCAGGTCATAGACGATGTCCTACCATGAGCTTGCCGCAGCT TTGGGCGAGTTCTACGGGCCCCAAACACCGACAGAGCGCAAGCGCCAAAT CGAAGCCCGGCTTCGCGAGTTCAAGGCCTCGCCCAATGCTTTGGGCGCAT GCCTCGAGATCTTGCAGCAGGCGGACGCAGAGGTAAGGGCACACTCGCCC AAGCGGGCCCCTGGATCACGCCGCCTCGCGTGCGCTCTGGCGCCCCTCAT TTGCCTCTGCTCACCTTTCCCCCCCCCCCCCCCTTGTTCCGGCAGGGTCA GTCGCAGCAGGGGGCGTATCTCATGTACTTTGCCGGGTCCACCCTCGAGG AGGTCATCCAGTGGAGATGGGACACGATTGCTCCCGAGGTACTTAGCCCG CTTGCCTGCCCCAAACTCCTTGCCACACCAACACCCCTCGCACACGTGCC TCATGCCCGCCCTTTCTGTGTGCTGCTGCCTTGCATGCCTGCCATACGTT CCATCCTGCCTGCCTGCTGTCAGCCACAGCCTGCTTCCCTGCTGCCTGCC TGCCTGCCAACCATCCTGCCTGCTTGCCTTGCCTGCCTGCTTGCCTGCCT GCCTGCCTGCCTGCTTGCAATCCTGCCTTCCCGTGCCCGCATACTGCCCT GCCGGCCTGCCGACCTTGCCTGACCCCATCCCTAACCCTCGGTCCTCGCA GGAACGGGTGCGCGTGCGGCGCTTCCTGTTCGAGTACCTCGCCGCGCGCC ACGCGTCCCTGCCACGCTGGGTTTCCACCAAGCTGGGCAAGGCGTTTGTG GACGTGGGGAAGACCTCCTGGCCACACGAGGACCCTTCTTTCCTCACAGA GCTGCAGAACCTGGCCAGGTGAGAGGGGGTGCTGGGTTCGTAGTCAATTC AACAATACAGCAATTGTACTTCGGAGTACGAGTACTACTTTCAAGTATGG AATGCTCGAACTGGAGCTGGCGTGTGGTGCATTTCCCGGCACAGTTGCGG AGCCTGGCCCAGGCGAGGAGGGCCATGGCAGGGGCCTCGAGGGCCTGGAG CTAGGGCTGAGGTCTCCCATCGCATGGCACGTTGCGGGCCGCCTCCCGCT GGCTGAACACGTGGCCTCATTGTGCCCCCCTTTTGCCCTCCCTCCCTCCC TCCCTCCCTCCCTCCCTCCCTCCCCCCATCCGTTCCGCACAGCCTCCCCG TGAACCACCCCCCCACCCCCAATTTTGTTCCACTCTGCTCCCTCACATCA GCTACAGCGCCCATCTTGGCCAGCCAAGCTCACCTCCCCACACAGAAGGT GCGATGCCTCGTCGCGCCTGACCCCCGCAATAAATAGACGCTGGCCGTTT TGCCCCGGCGGCCCGTGCGCCGCCTCCCACGCACCGCCCCAGGGTTGGCA CTTAACCCCTAAGTGGTGCCCTTTTAGGCCCTTAATTAGGGGTAATTAGA CCTAAAATGAAGGCTACTTAGGCCCTATTAGCCTCTAAGTGCCAACCCTG CCCCGCCCCGCCCCGCCCCTGTGCCGCCCTTGGCAGGCGGGAAGGCACGA CGGTCCTGGGGCTGTCGCTGCTCTCCCTGGTGGGCGAGGAGTTTGTAAGG GAGGACCTGCCCATGCCCACCGCCCGCAAGGCCGAGCTGCGGGCCGCCCT GCAGGCGTCCTTGCCGGAGGTGGTGTCTCTGCTGACCGAGGTATGTGTCA AGCTTTGTGGCTGTGCGACTCGACATTACAGTACTAGTACGTCGATTGGA GGCTCATAGGAGAGGAGCACAGTGTGTTACAGCGCAGTGCATGGTATATA TGTATATGTACTCACGTGGTGCTTGCCGCAGTCCCGAGACCATTGACCAC GCGCCTCGTTCAAGACGGAGCAGGTACTGTTTGTTTGGGATGGACTCGAG CATCTCGGAGCAGTTACGGCGAGTTTTGCACATGGGCTTTTCCCTTCCAC TTCCCCCGCGCCCCACACGTGATAAACCCTTTTCCCCCTGCTAAATTGGA CTTAGACACCAAAACCCTATATATGATCATGCGGACCCCAGGGGTAAAAG GGTTGAGCATGCCGGAGGTGGTGCCTCACCCAACAACAGAGGGAGCGGCG CTCCGCCCCCTTAGGGCCCCTCACGCAGGGTCCACCCCTGCGAGACGCGT GGACAATGGTCATTTCATTCGTTCGGCTGTTGAAGGGCAAGCGACTCATT CCCGCACACACTCCTGCGCGAAGGGGCTTGACACAAAAGCGACTGATCTG TGAGACGGGGTAAGGACAAGTATAGCAGGGCACTGCTACTTGCGGCAGTC ACTCCGGCAGTGGAGTGGCAACAAGAGGACTCTCCCGCCCCCCCGCTGTG GCATCCGCTGGTGACGAATGTCCATGCGGCTTGTAGCTATGTCGTACGGC AAGCAACTCCTGAGGACGCCCCCTGCTCCCTCTGCACCGCTCCCGCCGCC GGCGCCGCCCCACGCGGGCAGACCATTGGCAGCGCGTACGAGCGTGCTGC AGCCCCCGTGGCCCCTGCAGATCCCCAGGCGCAGGCTGCAAGGGAAGAGA TTCAAGCAGCCAGCAGGCGAGGGGCAGTGATGAAATATCGATCAGTAGAT AGTTGTCAGGCTGGACTGATCTTGTGGGTGGCGTTGCTAACTGCTTGGAT TTTAATGTGGGTCAAATTATCGAATATCGAATATCGATGGATATATAAAA ATAGATCAGTACTGTCGAGGTCCCCACCTTAGGTTGTTGGGACGGGGCCC GGAACTCGCACTCATCAAACTAAGTTAAAAATCAGTACTGTCGATAAATA GTTTGACTTGCTTAGACATTCCATCACTGGCAAGGGGGGGTAGTTGGGGG GGTGGGTGGTTGTCGGGGTTGTGGGAGGGGTGAGGGTTACTCATGAGTGC TTGCCATAGCCATGGATATGGCCAGTGACCACTGTGCCGTCCAAAAAGGG TGGCCCTATATGGGACGGACCACTGTTTGCTCTGTTGTTGGGGTGGCGGT GGTGGGGATGATATCTGAGCGGTGTCCCTGCAAGGGACGGAGCGCTGTTT CTTCTGCTGCTGGGGCGGTGGAGGTGGGGTTGATATCTGAGTACACGCCC GCAGCCGTAGGTAGGGACCATGAACGCCATACTTACTGTGTGGCTACCAA GCATGATACGGGAGACCCTACAGCAGCCGTGGAAACGGGGGTGCTACTTA GGTACCACAGTTATGCAGTTACTTACGCGCCCCAGCTGACCCGCCGCCTT AGCTGCGCAGTACGCAATATTGATACTTACCGACCCTGTGCATGTAGGCT ACATAAGTACTTTGTACTGTAGTAGTGGGCCCGCCGGTCCCCTGACGGAG CCCGCCGAAGAGGTACTGAGTTGGTAGCAGCGACAATCTGTATTTGCGTA TGCATTGGTTGACAACGCCTGGCAGGCTGAGCGAGGCTTACAATAGCTGA TATTGTAGTACAGTAGTGCTTACACTCTTATAGGTTGTCTGATAGGTCCT CGTACACAAAGTGAGGTTTCAGTAAAAATGATGTCATTGCACGTCAGTGT ACACTCCAATGGAGAGCACTGCACGTAGTTTGACATCACATCACTTCACA TCACAGTTTTCATTGTACTCGTACTCGAGTACACCAAAAAGCACTGAGGT AGTGTCGGCGCATGGTTAACAGTCTCGGGACTACGGCAAGCACAAGGTGA GTACACATACACTCGAGCACACATATATATATATACTCGAGTACCAGGTA TGTAGTACTCACGCTACAGCTGTGCTTGCCGTAGTCCCGAGACCAGCGAT ATGCGTTTGATACCACCCTGGTACGCTATTTAGGCCTCTGACAAGCATGT CACACCACCGTGACCATGCGCACGCCCGGCAGGTGCCTCCTCAACATTCT CAGCTGGGCCCCCCTCGGCGACTACCTCACGCTCCGCCTCTTCCAGGCGA ACTTCTCCGTCATAGAAGCCGCGGTCCGCGGCGCGGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:589657..593794-

>mRNA_S-ischiensis_contig11.2037.1 ID=mRNA_S-ischiensis_contig11.2037.1|Name=mRNA_S-ischiensis_contig11.2037.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1548bp|location=Sequence derived from alignment at S-ischiensis_contig11:589657..593794- (Schizocladia ischiensis KU_0333)
ATGTCCTACCATGAGCTTGCCGCAGCTTTGGGCGAGTTCTACGGGCCCCA
AACACCGACAGAGCGCAAGCGCCAAATCGAAGCCCGGCTTCGCGAGTTCA
AGGCCTCGCCCAATGCTTTGGGCGCATGCCTCGAGATCTTGCAGCAGGCG
GACGCAGAGATGTCCTACCATGAGCTTGCCGCAGCTTTGGGCGAGTTCTA
CGGGCCCCAAACACCGACAGAGCGCAAGCGCCAAATCGAAGCCCGGCTTC
GCGAGTTCAAGGCCTCGCCCAATGCTTTGGGCGCATGCCTCGAGATCTTG
CAGCAGGCGGACGCAGAGGGTCAGTCGCAGCAGGGGGCGTATCTCATGTA
CTTTGCCGGGTCCACCCTCGAGGAGGTCATCCAGTGGAGATGGGACACGA
TTGCTCCCGAGGGTCAGTCGCAGCAGGGGGCGTATCTCATGTACTTTGCC
GGGTCCACCCTCGAGGAGGTCATCCAGTGGAGATGGGACACGATTGCTCC
CGAGGAACGGGTGCGCGTGCGGCGCTTCCTGTTCGAGTACCTCGCCGCGC
GCCACGCGTCCCTGCCACGCTGGGTTTCCACCAAGCTGGGCAAGGCGTTT
GTGGACGTGGGGAAGACCTCCTGGCCACACGAGGACCCTTCTTTCCTCAC
AGAGCTGCAGAACCTGGCCAGGAACGGGTGCGCGTGCGGCGCTTCCTGTT
CGAGTACCTCGCCGCGCGCCACGCGTCCCTGCCACGCTGGGTTTCCACCA
AGCTGGGCAAGGCGTTTGTGGACGTGGGGAAGACCTCCTGGCCACACGAG
GACCCTTCTTTCCTCACAGAGCTGCAGAACCTGGCCAGGCGGGAAGGCAC
GACGGTCCTGGGGCTGTCGCTGCTCTCCCTGGTGGGCGAGGAGTTTGTAA
GGGAGGACCTGCCCATGCCCACCGCCCGCAAGGCCGAGCTGCGGGCCGCC
CTGCAGGCGTCCTTGCCGGAGGTGGTGTCTCTGCTGACCGAGGCGGGAAG
GCACGACGGTCCTGGGGCTGTCGCTGCTCTCCCTGGTGGGCGAGGAGTTT
GTAAGGGAGGACCTGCCCATGCCCACCGCCCGCAAGGCCGAGCTGCGGGC
CGCCCTGCAGGCGTCCTTGCCGGAGGTGGTGTCTCTGCTGACCGAGACCA
TTGGCAGCGCGTACGAGCGTGCTGCAGCCCCCGTGGCCCCTGCAGATCCC
CAGGCGCAGGCTGCAAGGGAAGAGATTCAAGCAGCCAGCAGACCATTGGC
AGCGCGTACGAGCGTGCTGCAGCCCCCGTGGCCCCTGCAGATCCCCAGGC
GCAGGCTGCAAGGGAAGAGATTCAAGCAGCCAGCAGGTGCCTCCTCAACA
TTCTCAGCTGGGCCCCCCTCGGCGACTACCTCACGCTCCGCCTCTTCCAG
GCGAACTTCTCCGTCATAGAAGCCGCGGTCCGCGGCGCGGGCGTGCCTCC
TCAACATTCTCAGCTGGGCCCCCCTCGGCGACTACCTCACGCTCCGCCTC
TTCCAGGCGAACTTCTCCGTCATAGAAGCCGCGGTCCGCGGCGCGGGC
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