mRNA_S-ischiensis_contig11.2036.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2036.1
Unique NamemRNA_S-ischiensis_contig11.2036.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2036.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:584151..584734 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size211
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815576.6750286-CDS-S-ischiensis_contig11:584150..5843271622815576.6750286-CDS-S-ischiensis_contig11:584150..584327Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 584151..584327 -
1695739780.9882848-CDS-S-ischiensis_contig11:584150..5843271695739780.9882848-CDS-S-ischiensis_contig11:584150..584327Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 584151..584327 -
1622815576.6882648-CDS-S-ischiensis_contig11:584701..5847341622815576.6882648-CDS-S-ischiensis_contig11:584701..584734Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 584702..584734 -
1695739780.9977489-CDS-S-ischiensis_contig11:584701..5847341695739780.9977489-CDS-S-ischiensis_contig11:584701..584734Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 584702..584734 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2036.1prot_S-ischiensis_contig11.2036.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 584151..584734 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2036.1

>prot_S-ischiensis_contig11.2036.1 ID=prot_S-ischiensis_contig11.2036.1|Name=mRNA_S-ischiensis_contig11.2036.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=70bp
LAEWILNAFSQVLGELGRISANAAGGSAGGGDAESIVRLATDAATLCALM
PVAVAAGGGAASAASADGGG
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mRNA from alignment at S-ischiensis_contig11:584151..584734-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2036.1 ID=mRNA_S-ischiensis_contig11.2036.1|Name=mRNA_S-ischiensis_contig11.2036.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=584bp|location=Sequence derived from alignment at S-ischiensis_contig11:584151..584734- (Schizocladia ischiensis KU_0333)
CTGGCTGAGTGGATCCTCAACGCTTTCTCGCAGGTGAGCCGGCAATTCAT
GTACGAGTACTTCGAGGTACCTGAGGACTTCGGAAATGAAGTACCTGCGA
TACTCCTTACCACTACCTAAAGTACCTGAGATATGGCCAATGCTACTGTG
CTGTGGGTGCTCAGTGCGGGGGAGTCGTCGGCGTCGGTTCGCACTTGCAG
GCCCCGACCCCTTCTTTGTCTTTTTGGCCAATTGCTTACTCTACCGCTCC
AGCCATGAACGAAGACACACAGTACAAAAAGCAAGCACACACACACACAC
ACATACACGTTCCCTCGCAGGTGCTGGGTGAACTCGGCCACATACCGCGA
AAGCTGGCATACAGTAAAAACGCAAGCACGCACACACACACACACGTTCC
CTCGCAGGTGCTGGGCGAACTCGGCCGCATATCCGCGAACGCTGCCGGCG
GCAGCGCCGGCGGGGGCGACGCAGAGAGCATCGTCCGGCTGGCCACGGAC
GCCGCGACACTTTGCGCCCTCATGCCCGTGGCCGTGGCCGCCGGCGGTGG
TGCGGCATCGGCGGCATCTGCTGACGGCGGTGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:584151..584734-

>mRNA_S-ischiensis_contig11.2036.1 ID=mRNA_S-ischiensis_contig11.2036.1|Name=mRNA_S-ischiensis_contig11.2036.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=420bp|location=Sequence derived from alignment at S-ischiensis_contig11:584151..584734- (Schizocladia ischiensis KU_0333)
CTGGCTGAGTGGATCCTCAACGCTTTCTCGCAGCTGGCTGAGTGGATCCT
CAACGCTTTCTCGCAGGTGCTGGGCGAACTCGGCCGCATATCCGCGAACG
CTGCCGGCGGCAGCGCCGGCGGGGGCGACGCAGAGAGCATCGTCCGGCTG
GCCACGGACGCCGCGACACTTTGCGCCCTCATGCCCGTGGCCGTGGCCGC
CGGCGGTGGTGCGGCATCGGCGGCATCTGCTGACGGCGGTGGGGTGCTGG
GCGAACTCGGCCGCATATCCGCGAACGCTGCCGGCGGCAGCGCCGGCGGG
GGCGACGCAGAGAGCATCGTCCGGCTGGCCACGGACGCCGCGACACTTTG
CGCCCTCATGCCCGTGGCCGTGGCCGCCGGCGGTGGTGCGGCATCGGCGG
CATCTGCTGACGGCGGTGGG
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