mRNA_S-ischiensis_contig11.2035.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2035.1
Unique NamemRNA_S-ischiensis_contig11.2035.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2035.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:579947..581521 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size313
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815576.627748-CDS-S-ischiensis_contig11:579947..5800271622815576.627748-CDS-S-ischiensis_contig11:579947..580027Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 579948..580027 -
1695739780.9678745-CDS-S-ischiensis_contig11:579947..5800271695739780.9678745-CDS-S-ischiensis_contig11:579947..580027Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 579948..580027 -
1622815576.6377063-CDS-S-ischiensis_contig11:581289..5815211622815576.6377063-CDS-S-ischiensis_contig11:581289..581521Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 581290..581521 -
1695739780.9773242-CDS-S-ischiensis_contig11:581289..5815211695739780.9773242-CDS-S-ischiensis_contig11:581289..581521Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 581290..581521 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2035.1prot_S-ischiensis_contig11.2035.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 579948..581521 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2035.1

>prot_S-ischiensis_contig11.2035.1 ID=prot_S-ischiensis_contig11.2035.1|Name=mRNA_S-ischiensis_contig11.2035.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=104bp
RARRQSLLADGCGGGRGGAQPPPLPIRAPRQLQYRHRRPGERPEGRGEAP
AVPAAAPAPRAAGWQPGTCVPDGGCASGCWDPARRGSSCAFPCPVGMPPP
SKLG
back to top

mRNA from alignment at S-ischiensis_contig11:579947..581521-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2035.1 ID=mRNA_S-ischiensis_contig11.2035.1|Name=mRNA_S-ischiensis_contig11.2035.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1575bp|location=Sequence derived from alignment at S-ischiensis_contig11:579947..581521- (Schizocladia ischiensis KU_0333)
CGTGCGCGTCGTCAGAGCTTGCTGGCCGACGGCTGCGGGGGCGGGAGGGG
GGGGGCACAGCCCCCCCCGCTCCCCATCCGTGCCCCACGGCAACTGCAGT
ACCGCCACCGCCGCCCCGGAGAGCGTCCAGAGGGCCGCGGGGAGGCTCCT
GCTGTCCCTGCCGCAGCGCCTGCCCCACGGGCTGCTGGCTGGCAGCCCGG
CACTTGCGTCCCTGATGGGGGATGCGCATCAGGTACAGTTTTGCGGTTGC
ACTCTACTGTACTGTACAGTACTGTGCAGTACATGAGGAGTGACATCGGG
TTATTGTAGCCGGCTTTTAGAGGGAATTTCGGGCCACACCTGGCCGTCAT
TTTGGCAGGGGCTTGAACCACAAACGCTCGGTTGAGGCGCTATAGGGGTC
AATGGTCTCGGGACTACGGCAAGCACAGTGTGAGTACGTAGACACTCGTG
CTTGTATACACATACTGTATACACTCTGAAGCTCCGGTTGGGAGAGGGGG
TCCTGGTGGAGACGGTGGGGTTGGGGGATGTACGCATGAGTTGCCTGCTG
GTAGCACTATGGCCCATTGACCACGCGTCCCATAGGGGTGACCCTACGGG
ACGGAGCACTGTTTCCTCTGTTGTTGGGGAGGCTGGCTACTGCCAACCTC
TCCTCGGTGGGGCTGGGGGGAGGAGAGAGAGAGAGGGGGGAGAGAGGGGG
GGGGGAGAGAGAGAGAGAGAGAGGGGGAGAGAGGGGGGAGGGGGGGGAGG
GGTACTCAAGGGTGCTCTACCTCCACTGTCTGGCTGTGGGGCTGGTGCAA
GTACTTTGAAGTAGAGTTCTGCAGTAACAGCGATTGGTGTGCGCTGGAAG
GCGTTCTGCGTGGGACTGCGGCAGTGGCACTGTACTCGAGTACTTCACAG
TGGTCGCACTGTACTGTACATTGTCCCGCTTGCTGTATTGTCCTACGGCA
AGCACGGCGCTCACTTGGCACATTATGTAGAGCACGGGACTGCTTCTTGA
GGCCTTGCGGAGCATCGCAGAGGTGGTCAAGACCTACGTTTGCAATAGCG
CAGTATCAATCATTGACAGGAGCAACACAGGGCGAGGTGCAGGCCACGTC
ACTAAAGACCTCTACAGTGGCCCTTCCTTAGCTTGCCGTAGCACCAATGT
GCTACAGTACAGCAGTACTCGTACTCGTAGTAGCGTCTATGTGGTGGTCA
ATACCCCGACCTGTCCTGCCAGGCGCCGGGCGCGCTGCTGCCCGGCGCAA
GTGCGGCTTCTTCTCTCCGTGCCTTGCTTGAGATCTGCCATATTCTTTTC
CGTCACCGCCTCCACCACGACCACCACCACCACCACTGCGCCGCCGTCGC
CTCGCTGCCGTCGCCACCTCTACAACGACCACCGCCGCCGCCGCCGCCGC
CGCCACCACGACCACCACCACCACCGCCGCCGCCGCCGCCGCCGCCGCCA
CCACCGCCACCTCTACCACCACCACCACTCCCAACATGATGCAGGTTGCT
GGGACCCTGCCAGAAGGGGTTCGTCCTGTGCTTTTCCATGCCCTGTCGGC
ATGCCTCCTCCCTCCAAACTTGGTG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig11:579947..581521-

>mRNA_S-ischiensis_contig11.2035.1 ID=mRNA_S-ischiensis_contig11.2035.1|Name=mRNA_S-ischiensis_contig11.2035.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=624bp|location=Sequence derived from alignment at S-ischiensis_contig11:579947..581521- (Schizocladia ischiensis KU_0333)
CGTGCGCGTCGTCAGAGCTTGCTGGCCGACGGCTGCGGGGGCGGGAGGGG
GGGGGCACAGCCCCCCCCGCTCCCCATCCGTGCCCCACGGCAACTGCAGT
ACCGCCACCGCCGCCCCGGAGAGCGTCCAGAGGGCCGCGGGGAGGCTCCT
GCTGTCCCTGCCGCAGCGCCTGCCCCACGGGCTGCTGGCTGGCAGCCCGG
CACTTGCGTCCCTGATGGGGGATGCGCATCAGCGTGCGCGTCGTCAGAGC
TTGCTGGCCGACGGCTGCGGGGGCGGGAGGGGGGGGGCACAGCCCCCCCC
GCTCCCCATCCGTGCCCCACGGCAACTGCAGTACCGCCACCGCCGCCCCG
GAGAGCGTCCAGAGGGCCGCGGGGAGGCTCCTGCTGTCCCTGCCGCAGCG
CCTGCCCCACGGGCTGCTGGCTGGCAGCCCGGCACTTGCGTCCCTGATGG
GGGATGCGCATCAGGTTGCTGGGACCCTGCCAGAAGGGGTTCGTCCTGTG
CTTTTCCATGCCCTGTCGGCATGCCTCCTCCCTCCAAACTTGGTGTTGCT
GGGACCCTGCCAGAAGGGGTTCGTCCTGTGCTTTTCCATGCCCTGTCGGC
ATGCCTCCTCCCTCCAAACTTGGT
back to top