mRNA_S-ischiensis_contig11.2028.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2028.1
Unique NamemRNA_S-ischiensis_contig11.2028.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig11.2028.1 vs. uniprot
Match: D8LHU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHU3_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 1.650e-27
Identity = 53/118 (44.92%), Postives = 76/118 (64.41%), Query Frame = 2 
Query:    5 RGCMLCRGPGDSVEAGRLLPMDDGTWVHVQCAVWSSEVFEEQKTPLDAPLLQRLHRARNRSNMT-CSLCGERGPSLDCANMKCEEVFHFQCAIEAGCCLLSDKRTLCPSHMDQVEGVA 355
            R C LC+  GD  + GRLLP+DDG W+H  C +WS EV+E Q    +   +  L++AR R  +  CSLC E G ++DC++ KCEEV+H++CA++AGC   ++    CP H +  EGVA
Sbjct: 2370 RACCLCKATGDGDKTGRLLPLDDGQWIHTLCGLWSREVYENQN---NFGTICELYKARGRGRLLECSLCKEPGATVDCSSHKCEEVYHYECALDAGCVFYNNLDVSCPLHHE--EGVA 2482
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BLAST of mRNA_S-ischiensis_contig11.2028.1 vs. uniprot
Match: A0A7R8V4I8_HERIL (Hypothetical protein n=2 Tax=Hermetia illucens TaxID=343691 RepID=A0A7R8V4I8_HERIL)

HSP 1 Score: 100 bits (250), Expect = 5.400e-22
Identity = 49/115 (42.61%), Postives = 69/115 (60.00%), Query Frame = 2 
Query:    5 RGCMLCRGPGDSV--EAGRLLPMDDGTWVHVQCAVWSSEVFEEQKTPLDAPLLQRLHRARNRSNMT-CSLCGERGPSLDCANMKCEEVFHFQCAIEAGCCLLSDKRTLCPSHMDQ 340
            R CMLC+G G+ +  E  RL+      WVH+ CA+WS+EVFEE    +D  L Q +H A +R  +  C+LCG RG ++ C    C E FH+ CA +A C  L+DK   CP H+++
Sbjct: 1362 RSCMLCKGVGEGISGEESRLIYCGQNFWVHINCALWSAEVFEE----IDGSL-QNVHSAISRGRLIKCTLCGNRGATVGCNVKSCGEHFHYPCARKAECSFLTDKTVYCPQHVEE 1471
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BLAST of mRNA_S-ischiensis_contig11.2028.1 vs. uniprot
Match: UPI001EEC428A (LOW QUALITY PROTEIN: histone-lysine N-methyltransferase 2C n=1 Tax=Silurus meridionalis TaxID=175797 RepID=UPI001EEC428A)

HSP 1 Score: 97.8 bits (242), Expect = 6.600e-21
Identity = 49/121 (40.50%), Postives = 66/121 (54.55%), Query Frame = 2 
Query:    5 RGCMLCRGPGDSVEAG--RLLPMDDGTWVHVQCAVWSSEVFEEQKTPLDAPLLQRLHRARNRSN-MTCSLCGERGPSLDCANMKCEEVFHFQCAIEAGCCLLSDKRTLCPSHMDQVEGVAA 358
            R C  C   GD V  G  RLL +D  TWVH+ CA+WSSEV+E Q     A  L  + +AR R   ++C+ C   G +  C  ++C  V+HF CA++AGC    DK  LC  H  ++ G  A
Sbjct: 4379 RRCCFCHQEGDGVTDGAARLLNLDLDTWVHLNCALWSSEVYETQ-----AGALINVEQARQRGRTISCAFCQRLGATSGCHRLRCLNVYHFTCALQAGCTFFKDKTMLCHQHRPRISGTGA 4494
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BLAST of mRNA_S-ischiensis_contig11.2028.1 vs. uniprot
Match: A0A556TZV5_BAGYA ([Histone H3]-lysine(4) N-methyltransferase n=1 Tax=Bagarius yarrelli TaxID=175774 RepID=A0A556TZV5_BAGYA)

HSP 1 Score: 97.1 bits (240), Expect = 1.220e-20
Identity = 49/121 (40.50%), Postives = 66/121 (54.55%), Query Frame = 2 
Query:    5 RGCMLCRGPGDSVEAG--RLLPMDDGTWVHVQCAVWSSEVFEEQKTPLDAPLLQRLHRARNRSN-MTCSLCGERGPSLDCANMKCEEVFHFQCAIEAGCCLLSDKRTLCPSHMDQVEGVAA 358
            R C  C   GD V  G  RLL +D  TWVH+ CA+WSSEV+E Q     A  L  + +AR R   ++C+ C   G +  C  ++C  V+HF CA++AGC    DK  LC  H  ++ G  A
Sbjct: 3948 RRCCFCHQEGDGVTDGAARLLNLDLDTWVHLNCALWSSEVYETQ-----AGALINVEQARQRGRTISCAFCQRLGATSGCHRLRCLNVYHFTCALQAGCTFFKDKTMLCHQHRPRISGSGA 4063
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BLAST of mRNA_S-ischiensis_contig11.2028.1 vs. uniprot
Match: A0A2D0R8X9_ICTPU ([Histone H3]-lysine(4) N-methyltransferase n=1 Tax=Ictalurus punctatus TaxID=7998 RepID=A0A2D0R8X9_ICTPU)

HSP 1 Score: 97.1 bits (240), Expect = 1.230e-20
Identity = 49/121 (40.50%), Postives = 66/121 (54.55%), Query Frame = 2 
Query:    5 RGCMLCRGPGDSVEAG--RLLPMDDGTWVHVQCAVWSSEVFEEQKTPLDAPLLQRLHRARNRSN-MTCSLCGERGPSLDCANMKCEEVFHFQCAIEAGCCLLSDKRTLCPSHMDQVEGVAA 358
            R C  C   GD V  G  RLL +D  TWVH+ CA+WSSEV+E Q     A  L  + +AR R   ++C+ C   G +  C  ++C  V+HF CA++AGC    DK  LC  H  ++ G  A
Sbjct: 4431 RRCCFCHQEGDGVTDGAARLLNLDLDTWVHLNCALWSSEVYETQ-----AGALINVEQARQRGRTVSCAFCQRLGATSGCHRLRCLNVYHFTCALQAGCTFFKDKTMLCHQHRPRISGSGA 4546
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BLAST of mRNA_S-ischiensis_contig11.2028.1 vs. uniprot
Match: UPI001F54A8D9 (histone-lysine N-methyltransferase 2C isoform X5 n=1 Tax=Ictalurus punctatus TaxID=7998 RepID=UPI001F54A8D9)

HSP 1 Score: 97.1 bits (240), Expect = 1.230e-20
Identity = 49/121 (40.50%), Postives = 66/121 (54.55%), Query Frame = 2 
Query:    5 RGCMLCRGPGDSVEAG--RLLPMDDGTWVHVQCAVWSSEVFEEQKTPLDAPLLQRLHRARNRSN-MTCSLCGERGPSLDCANMKCEEVFHFQCAIEAGCCLLSDKRTLCPSHMDQVEGVAA 358
            R C  C   GD V  G  RLL +D  TWVH+ CA+WSSEV+E Q     A  L  + +AR R   ++C+ C   G +  C  ++C  V+HF CA++AGC    DK  LC  H  ++ G  A
Sbjct: 4447 RRCCFCHQEGDGVTDGAARLLNLDLDTWVHLNCALWSSEVYETQ-----AGALINVEQARQRGRTVSCAFCQRLGATSGCHRLRCLNVYHFTCALQAGCTFFKDKTMLCHQHRPRISGSGA 4562
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BLAST of mRNA_S-ischiensis_contig11.2028.1 vs. uniprot
Match: A0A8J4TF09_CLAMG ([Histone H3]-lysine(4) N-methyltransferase (Fragment) n=1 Tax=Clarias magur TaxID=1594786 RepID=A0A8J4TF09_CLAMG)

HSP 1 Score: 97.1 bits (240), Expect = 1.230e-20
Identity = 49/121 (40.50%), Postives = 66/121 (54.55%), Query Frame = 2 
Query:    5 RGCMLCRGPGDSVEAG--RLLPMDDGTWVHVQCAVWSSEVFEEQKTPLDAPLLQRLHRARNRSN-MTCSLCGERGPSLDCANMKCEEVFHFQCAIEAGCCLLSDKRTLCPSHMDQVEGVAA 358
            R C  C   GD V  G  RLL +D  TWVH+ CA+WSSEV+E Q     A  L  + +AR R   ++C+ C   G +  C  ++C  V+HF CA++AGC    DK  LC  H  ++ G  A
Sbjct: 4463 RRCCFCHQEGDGVTDGAARLLNLDLDTWVHLNCALWSSEVYETQ-----AGALINVEQARQRGRTISCAFCQRLGATSGCHRLRCLNVYHFTCALQAGCTFFKDKTMLCHQHRPRISGSGA 4578
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BLAST of mRNA_S-ischiensis_contig11.2028.1 vs. uniprot
Match: A0A7J6B6Z3_AMEME ([Histone H3]-lysine(4) N-methyltransferase n=1 Tax=Ameiurus melas TaxID=219545 RepID=A0A7J6B6Z3_AMEME)

HSP 1 Score: 97.1 bits (240), Expect = 1.230e-20
Identity = 49/121 (40.50%), Postives = 66/121 (54.55%), Query Frame = 2 
Query:    5 RGCMLCRGPGDSVEAG--RLLPMDDGTWVHVQCAVWSSEVFEEQKTPLDAPLLQRLHRARNRSN-MTCSLCGERGPSLDCANMKCEEVFHFQCAIEAGCCLLSDKRTLCPSHMDQVEGVAA 358
            R C  C   GD V  G  RLL +D  TWVH+ CA+WSSEV+E Q     A  L  + +AR R   ++C+ C   G +  C  ++C  V+HF CA++AGC    DK  LC  H  ++ G  A
Sbjct: 4458 RRCCFCHQEGDGVTDGAARLLNLDLDTWVHLNCALWSSEVYETQ-----AGALINVEQARQRGRTISCAFCQRLGATSGCHRLRCLNVYHFTCALQAGCTFFKDKTMLCHQHRPRISGSGA 4573
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BLAST of mRNA_S-ischiensis_contig11.2028.1 vs. uniprot
Match: A0A2D0R8Y0_ICTPU ([Histone H3]-lysine(4) N-methyltransferase n=9 Tax=Siluroidei TaxID=1489793 RepID=A0A2D0R8Y0_ICTPU)

HSP 1 Score: 97.1 bits (240), Expect = 1.230e-20
Identity = 49/121 (40.50%), Postives = 66/121 (54.55%), Query Frame = 2 
Query:    5 RGCMLCRGPGDSVEAG--RLLPMDDGTWVHVQCAVWSSEVFEEQKTPLDAPLLQRLHRARNRSN-MTCSLCGERGPSLDCANMKCEEVFHFQCAIEAGCCLLSDKRTLCPSHMDQVEGVAA 358
            R C  C   GD V  G  RLL +D  TWVH+ CA+WSSEV+E Q     A  L  + +AR R   ++C+ C   G +  C  ++C  V+HF CA++AGC    DK  LC  H  ++ G  A
Sbjct: 4466 RRCCFCHQEGDGVTDGAARLLNLDLDTWVHLNCALWSSEVYETQ-----AGALINVEQARQRGRTVSCAFCQRLGATSGCHRLRCLNVYHFTCALQAGCTFFKDKTMLCHQHRPRISGSGA 4581
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BLAST of mRNA_S-ischiensis_contig11.2028.1 vs. uniprot
Match: A0A2D0R8W7_ICTPU ([Histone H3]-lysine(4) N-methyltransferase n=4 Tax=Ictalurus punctatus TaxID=7998 RepID=A0A2D0R8W7_ICTPU)

HSP 1 Score: 97.1 bits (240), Expect = 1.230e-20
Identity = 49/121 (40.50%), Postives = 66/121 (54.55%), Query Frame = 2 
Query:    5 RGCMLCRGPGDSVEAG--RLLPMDDGTWVHVQCAVWSSEVFEEQKTPLDAPLLQRLHRARNRSN-MTCSLCGERGPSLDCANMKCEEVFHFQCAIEAGCCLLSDKRTLCPSHMDQVEGVAA 358
            R C  C   GD V  G  RLL +D  TWVH+ CA+WSSEV+E Q     A  L  + +AR R   ++C+ C   G +  C  ++C  V+HF CA++AGC    DK  LC  H  ++ G  A
Sbjct: 4482 RRCCFCHQEGDGVTDGAARLLNLDLDTWVHLNCALWSSEVYETQ-----AGALINVEQARQRGRTVSCAFCQRLGATSGCHRLRCLNVYHFTCALQAGCTFFKDKTMLCHQHRPRISGSGA 4597
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2028.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHU3_ECTSI1.650e-2744.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7R8V4I8_HERIL5.400e-2242.61Hypothetical protein n=2 Tax=Hermetia illucens Tax... [more]
UPI001EEC428A6.600e-2140.50LOW QUALITY PROTEIN: histone-lysine N-methyltransf... [more]
A0A556TZV5_BAGYA1.220e-2040.50[Histone H3]-lysine(4) N-methyltransferase n=1 Tax... [more]
A0A2D0R8X9_ICTPU1.230e-2040.50[Histone H3]-lysine(4) N-methyltransferase n=1 Tax... [more]
UPI001F54A8D91.230e-2040.50histone-lysine N-methyltransferase 2C isoform X5 n... [more]
A0A8J4TF09_CLAMG1.230e-2040.50[Histone H3]-lysine(4) N-methyltransferase (Fragme... [more]
A0A7J6B6Z3_AMEME1.230e-2040.50[Histone H3]-lysine(4) N-methyltransferase n=1 Tax... [more]
A0A2D0R8Y0_ICTPU1.230e-2040.50[Histone H3]-lysine(4) N-methyltransferase n=9 Tax... [more]
A0A2D0R8W7_ICTPU1.230e-2040.50[Histone H3]-lysine(4) N-methyltransferase n=4 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:554899..556532 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.3
Seed ortholog evalue3.6e-22
Seed eggNOG ortholog2880.D8LHU3
Preferred namePHF6
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K09186,ko:K09188,ko:K11422,ko:K14959,ko:K18494,ko:K22371
KEGG ReactionR03875,R03938,R04866,R04867
KEGG Pathwayko00310,ko04934,ko05202,map00310,map04934,map05202
GOsGO:0000003,GO:0000122,GO:0000123,GO:0000902,GO:0000904,GO:0000976,GO:0000977,GO:0000980,GO:0000981,GO:0001012,GO:0001067,GO:0001158,GO:0001227,GO:0001541,GO:0001654,GO:0001894,GO:0002376,GO:0002520,GO:0002682,GO:0003002,GO:0003006,GO:0003008,GO:0003674,GO:0003676,GO:0003677,GO:0003680,GO:0003682,GO:0003690,GO:0003700,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005694,GO:0005700,GO:0005730,GO:0005737,GO:0005794,GO:0005829,GO:0005886,GO:0006139,GO:0006259,GO:0006304,GO:0006305,GO:0006306,GO:0006325,GO:0006338,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006464,GO:0006473,GO:0006475,GO:0006479,GO:0006725,GO:0006807,GO:0006928,GO:0006935,GO:0006996,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007389,GO:0007399,GO:0007409,GO:0007411,GO:0007423,GO:0007444,GO:0007482,GO:0007548,GO:0007610,GO:0007611,GO:0007612,GO:0007613,GO:0007623,GO:0007632,GO:0008023,GO:0008092,GO:0008150,GO:0008152,GO:0008157,GO:0008168,GO:0008170,GO:0008213,GO:0008270,GO:0008276,GO:0008285,GO:0008306,GO:0008354,GO:0008406,GO:0008542,GO:0008585,GO:0008757,GO:0009058,GO:0009059,GO:0009314,GO:0009416,GO:0009605,GO:0009628,GO:0009653,GO:0009790,GO:0009791,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009952,GO:0009987,GO:0009994,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0010646,GO:0012505,GO:0015631,GO:0016020,GO:0016043,GO:0016070,GO:0016278,GO:0016279,GO:0016458,GO:0016477,GO:0016569,GO:0016570,GO:0016571,GO:0016573,GO:0016604,GO:0016607,GO:0016740,GO:0016741,GO:0018022,GO:0018023,GO:0018024,GO:0018026,GO:0018027,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019899,GO:0019902,GO:0019903,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0030030,GO:0030097,GO:0030154,GO:0030182,GO:0030728,GO:0031056,GO:0031058,GO:0031060,GO:0031062,GO:0031090,GO:0031175,GO:0031248,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031401,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032259,GO:0032268,GO:0032270,GO:0032409,GO:0032411,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032784,GO:0032786,GO:0032879,GO:0032922,GO:0032968,GO:0032989,GO:0032990,GO:0032991,GO:0033043,GO:0033044,GO:0034243,GO:0034641,GO:0034645,GO:0034654,GO:0034708,GO:0034968,GO:0035065,GO:0035097,GO:0035162,GO:0035216,GO:0035295,GO:0035326,GO:0035640,GO:0036211,GO:0040011,GO:0040029,GO:0042054,GO:0042127,GO:0042221,GO:0042330,GO:0042393,GO:0042592,GO:0042800,GO:0042802,GO:0042803,GO:0042826,GO:0043021,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043543,GO:0043565,GO:0043933,GO:0043966,GO:0043967,GO:0043984,GO:0044030,GO:0044085,GO:0044093,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044648,GO:0044665,GO:0044703,GO:0044728,GO:0044877,GO:0045137,GO:0045322,GO:0045595,GO:0045637,GO:0045652,GO:0045815,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0046545,GO:0046660,GO:0046872,GO:0046914,GO:0046983,GO:0048096,GO:0048167,GO:0048168,GO:0048172,GO:0048468,GO:0048477,GO:0048511,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048536,GO:0048568,GO:0048583,GO:0048584,GO:0048608,GO:0048609,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048736,GO:0048737,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0048870,GO:0048871,GO:0048872,GO:0048873,GO:0050776,GO:0050789,GO:0050793,GO:0050794,GO:0050804,GO:0050877,GO:0050890,GO:0050896,GO:0051049,GO:0051050,GO:0051052,GO:0051053,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051219,GO:0051239,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051568,GO:0051569,GO:0051571,GO:0051674,GO:0051704,GO:0060216,GO:0060249,GO:0060255,GO:0060429,GO:0061458,GO:0061564,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070577,GO:0071339,GO:0071440,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0080182,GO:0090304,GO:0097110,GO:0097159,GO:0097485,GO:0097659,GO:0099177,GO:0120036,GO:0120039,GO:0140030,GO:0140033,GO:0140096,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901532,GO:1901564,GO:1901576,GO:1901674,GO:1901983,GO:1902036,GO:1902275,GO:1902493,GO:1902494,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1903706,GO:1905269,GO:1905642,GO:1990234,GO:1990837,GO:2000026,GO:2000112,GO:2000113,GO:2000615,GO:2000736,GO:2000756,GO:2001023,GO:2001025,GO:2001038,GO:2001040,GO:2001141,GO:2001252
EggNOG free text desc.SET domain
EggNOG OGsCOG2940@1,KOG1080@2759,KOG1084@2759,KOG4443@2759
EC2.1.1.43,2.3.2.26
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03000,ko03036,ko04121
Hectar predicted targeting categoryother localisation
Exons3
Model size427
Cds size414
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2028.1prot_S-ischiensis_contig11.2028.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 554912..556532 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815590.8032-UTR-S-ischiensis_contig11:554898..5549111622815590.8032-UTR-S-ischiensis_contig11:554898..554911Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 554899..554911 +
1695739789.384444-UTR-S-ischiensis_contig11:554898..5549111695739789.384444-UTR-S-ischiensis_contig11:554898..554911Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 554899..554911 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815590.8210173-CDS-S-ischiensis_contig11:554911..5550131622815590.8210173-CDS-S-ischiensis_contig11:554911..555013Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 554912..555013 +
1695739789.3988616-CDS-S-ischiensis_contig11:554911..5550131695739789.3988616-CDS-S-ischiensis_contig11:554911..555013Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 554912..555013 +
1622815590.844756-CDS-S-ischiensis_contig11:555805..5559611622815590.844756-CDS-S-ischiensis_contig11:555805..555961Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 555806..555961 +
1695739789.4093401-CDS-S-ischiensis_contig11:555805..5559611695739789.4093401-CDS-S-ischiensis_contig11:555805..555961Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 555806..555961 +
1622815590.8587542-CDS-S-ischiensis_contig11:556376..5565321622815590.8587542-CDS-S-ischiensis_contig11:556376..556532Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 556377..556532 +
1695739789.4198658-CDS-S-ischiensis_contig11:556376..5565321695739789.4198658-CDS-S-ischiensis_contig11:556376..556532Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 556377..556532 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2028.1

>prot_S-ischiensis_contig11.2028.1 ID=prot_S-ischiensis_contig11.2028.1|Name=mRNA_S-ischiensis_contig11.2028.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=138bp
MLCRGPGDSVEAGRLLPMDDGTWVHVQCAVWSSEVFEEQKTPLDAPLLQR
LHRARNRSNMTCSLCGERGPSLDCANMKCEEVFHFQCAIEAGCCLLSDKR
TLCPSHMDQVEGVAAAPAPPPAASSASAAATAAPPLAD
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mRNA from alignment at S-ischiensis_contig11:554899..556532+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2028.1 ID=mRNA_S-ischiensis_contig11.2028.1|Name=mRNA_S-ischiensis_contig11.2028.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1634bp|location=Sequence derived from alignment at S-ischiensis_contig11:554899..556532+ (Schizocladia ischiensis KU_0333)
CCCGCGGGGGTGCATGCTGTGCCGGGGGCCCGGGGACAGCGTGGAGGCAG
GGCGTCTGCTGCCCATGGACGATGGGACTTGGGTGCACGTGCAGTGTGCC
GTGTGGTCGAGCGAGGTGGGTTGGGGCGGGGGGGAGAGGCCGCCTTCCCA
CGTGCAGAGCCCTGTGCTGTGGGTCACTCGCGAGCAGCGCTTACGAGTGC
TATACCCAACTGTCGCCGTGGTGCATGCTCACACCGTGTGCTTTCTCTAA
GTACACGAGACCCAACTGTCGCCGTGGTGCATGCTCACAATGTGTGCTTG
CTTTAACCCTTTTTTCCCCTGGTAAATTGGACGTACACACTAAAACCCTA
TGATTATACGTACCCCAGGGTTAAAAGGGGTAAGTACGTGAGGTGACGCT
ATCGGAGGCTACGCTGTACCCTCTCTCGGGATGGGTTGGCACGAGAATGG
TACAATCGCAAGTACGTACTGACCCCCCGGCGTATGCTGTCGGCCGTGTG
CCTGCTGGAGAGAACCGCGCCCGGACTCGCCCAGGACCCCAAGCTTTACG
CAGTCATGAGTACAGTACTACTTCGTACATGGAGTGCTCGTGTACTCGTA
CTCCTACTAAATCAACGAAGTACTCGAGTACTTGTACTTGGAAGCGCAGC
AGAGTTTGGCAAGTGCACAGTCCGGAATGAAAAACCACGGTGCTGGGAAA
ATGGTGTCCGTCCGTGCCGCTCACTGTAGGCATGTATAGCACTCGAGTGC
AGCGCTATTCTTTTCCCACGTCCCAACCTGCCGGAAAACAACATAACATA
GCCTCCTCCAGCTCACGGCAAACCCCGCCGTGTGACGCCGGTCCGGTCCC
GGTCCGGTCCCGATCCGGGCCCGGCGGCTGCTGCCCCCGCGACGAACGGA
CGGACAGGTGTTTGAGGAACAGAAGACTCCGTTGGACGCCCCCCTCCTAC
AGAGGCTGCACAGGGCGCGGAATAGGAGCAACATGACCTGCTCACTATGC
GGCGAGCGAGGGCCGTCGCTGGACTGCGCCAACATGAAGTGCGAAGAGGT
CTTCCACTTCCAGGTGGGGCATCAGGCGTTCTTCGATTCTGTGAAAACAC
GACTTCGAGCGCGTACTCGAGCAGAGGAGGAGGAGGAGGCGGGCAACGGT
ACGTGGACCTTGGCGCTAAAATCTGTATCGCGTTCAGTATCCCGGGGAAG
CCAGTAGTCCACTGAGGGTTGGACCTGACGTGGTGGTGGGGGGCGCTTTT
TTCCGCGCTGCTGGCCCTGCGGACGCCAGCCTGCCTGCGTGGTGACCCCG
CAGAGTGAGACTTCCAGGCTTCCCCTCTCCCTCACCGCCAGTTTGCCTCC
TTCCTATCTCCCCTACGCCTACCCCTCTAACCCGCCCTCTCTCCCTCACT
CCGTCCGCTCCCCGCTGCCCGCGTCTGTGCACTCTTCTCTGCCCGCCTGC
CCACTCACCCGCGCACCCGCCCCCATAGTGCGCCATCGAAGCGGGCTGCT
GCCTCCTCAGCGACAAGCGGACCCTCTGCCCCTCCCACATGGACCAAGTG
GAAGGGGTGGCGGCGGCGCCCGCACCCCCCCCCGCTGCGTCATCCGCCTC
CGCCGCCGCCACCGCCGCACCCCCGCTGGCGGAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:554899..556532+

>mRNA_S-ischiensis_contig11.2028.1 ID=mRNA_S-ischiensis_contig11.2028.1|Name=mRNA_S-ischiensis_contig11.2028.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=828bp|location=Sequence derived from alignment at S-ischiensis_contig11:554899..556532+ (Schizocladia ischiensis KU_0333)
ATGCTGTGCCGGGGGCCCGGGGACAGCGTGGAGGCAGGGCGTCTGCTGCC
CATGGACGATGGGACTTGGGTGCACGTGCAGTGTGCCGTGTGGTCGAGCG
AGATGCTGTGCCGGGGGCCCGGGGACAGCGTGGAGGCAGGGCGTCTGCTG
CCCATGGACGATGGGACTTGGGTGCACGTGCAGTGTGCCGTGTGGTCGAG
CGAGGTGTTTGAGGAACAGAAGACTCCGTTGGACGCCCCCCTCCTACAGA
GGCTGCACAGGGCGCGGAATAGGAGCAACATGACCTGCTCACTATGCGGC
GAGCGAGGGCCGTCGCTGGACTGCGCCAACATGAAGTGCGAAGAGGTCTT
CCACTTCCAGGTGTTTGAGGAACAGAAGACTCCGTTGGACGCCCCCCTCC
TACAGAGGCTGCACAGGGCGCGGAATAGGAGCAACATGACCTGCTCACTA
TGCGGCGAGCGAGGGCCGTCGCTGGACTGCGCCAACATGAAGTGCGAAGA
GGTCTTCCACTTCCAGTGCGCCATCGAAGCGGGCTGCTGCCTCCTCAGCG
ACAAGCGGACCCTCTGCCCCTCCCACATGGACCAAGTGGAAGGGGTGGCG
GCGGCGCCCGCACCCCCCCCCGCTGCGTCATCCGCCTCCGCCGCCGCCAC
CGCCGCACCCCCGCTGGCGGACTGCGCCATCGAAGCGGGCTGCTGCCTCC
TCAGCGACAAGCGGACCCTCTGCCCCTCCCACATGGACCAAGTGGAAGGG
GTGGCGGCGGCGCCCGCACCCCCCCCCGCTGCGTCATCCGCCTCCGCCGC
CGCCACCGCCGCACCCCCGCTGGCGGAC
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