mRNA_S-ischiensis_contig11.2023.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2023.1
Unique NamemRNA_S-ischiensis_contig11.2023.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2023.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:531585..532220 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size200
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815576.5227313-CDS-S-ischiensis_contig11:531584..5317371622815576.5227313-CDS-S-ischiensis_contig11:531584..531737Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 531585..531737 +
1695739780.9085243-CDS-S-ischiensis_contig11:531584..5317371695739780.9085243-CDS-S-ischiensis_contig11:531584..531737Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 531585..531737 +
1622815576.5327852-CDS-S-ischiensis_contig11:532174..5322191622815576.5327852-CDS-S-ischiensis_contig11:532174..532219Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 532175..532219 +
1695739780.9224138-CDS-S-ischiensis_contig11:532174..5322191695739780.9224138-CDS-S-ischiensis_contig11:532174..532219Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 532175..532219 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2023.1prot_S-ischiensis_contig11.2023.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 531585..532219 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2023.1

>prot_S-ischiensis_contig11.2023.1 ID=prot_S-ischiensis_contig11.2023.1|Name=mRNA_S-ischiensis_contig11.2023.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=66bp
KDWESGGGGKSEVGPCPQCLTAWRGEKEPVLVCARCHRGHHPGCLDPPLR
DAQAHALGAVCDGGSG
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mRNA from alignment at S-ischiensis_contig11:531585..532220+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2023.1 ID=mRNA_S-ischiensis_contig11.2023.1|Name=mRNA_S-ischiensis_contig11.2023.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=636bp|location=Sequence derived from alignment at S-ischiensis_contig11:531585..532220+ (Schizocladia ischiensis KU_0333)
AAGGATTGGGAGAGCGGGGGAGGGGGGAAATCTGAGGTTGGGCCGTGCCC
GCAGTGTCTGACGGCGTGGCGGGGCGAGAAGGAGCCGGTGCTGGTTTGCG
CGCGGTGCCACCGGGGGCATCACCCCGGCTGCCTGGACCCCCCACTCAGG
GACGTGAGTGAGAGACACACACACATGCACATACGAGTACAGTTACACAC
ACGACCGACACACGGCACGTATGCAGACGCGCACGCATGAGCGCGCCCGC
GCGCACACACACACACACACGCACGGGTACACGCACCGCAGCGCGCACAT
AAGATACACAGCATGAACAGTGTAATGGCTTTGCTGATAGGCCATGCCCA
CGCCACAATGACCCAGCCATCGCCACTGCGGTCGTCGCCCCACTTAGTTT
GCCGGCAAGGCCTTGCTGCTGCCCCAGCCCCCTTCCCCTCCCCGCCGGAT
TTTTCGCTTGCCCGAGCGTGGCTCCACGGGCCACACACACATACACACTC
TCTTTGTGCGTGCACACACCAACGCTCTCGCACGCGCACGCGCCCACACA
GCCATGCACGCACCCACGCACGCAACACACGCCTTTCCAGGCGCAAGCCC
ATGCCCTGGGAGCTGTCTGCGACGGCGGCAGCGGAA
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:531585..532220+

>mRNA_S-ischiensis_contig11.2023.1 ID=mRNA_S-ischiensis_contig11.2023.1|Name=mRNA_S-ischiensis_contig11.2023.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=396bp|location=Sequence derived from alignment at S-ischiensis_contig11:531585..532220+ (Schizocladia ischiensis KU_0333)
AAGGATTGGGAGAGCGGGGGAGGGGGGAAATCTGAGGTTGGGCCGTGCCC
GCAGTGTCTGACGGCGTGGCGGGGCGAGAAGGAGCCGGTGCTGGTTTGCG
CGCGGTGCCACCGGGGGCATCACCCCGGCTGCCTGGACCCCCCACTCAGG
GACAAGGATTGGGAGAGCGGGGGAGGGGGGAAATCTGAGGTTGGGCCGTG
CCCGCAGTGTCTGACGGCGTGGCGGGGCGAGAAGGAGCCGGTGCTGGTTT
GCGCGCGGTGCCACCGGGGGCATCACCCCGGCTGCCTGGACCCCCCACTC
AGGGACGCGCAAGCCCATGCCCTGGGAGCTGTCTGCGACGGCGGCAGCGG
AGCGCAAGCCCATGCCCTGGGAGCTGTCTGCGACGGCGGCAGCGGA
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